POIMs: positional oligomer importance matrices - understanding support vector machine-based signal detectors. [Citation Graph (, )][DBLP]
The effectiveness of position- and composition-specific gap costs for protein similarity searches. [Citation Graph (, )][DBLP]
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles. [Citation Graph (, )][DBLP]
Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. [Citation Graph (, )][DBLP]
Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space. [Citation Graph (, )][DBLP]
MicroRNA prediction with a novel ranking algorithm based on random walks. [Citation Graph (, )][DBLP]
A robust framework for detecting structural variations in a genome. [Citation Graph (, )][DBLP]
A max-margin model for efficient simultaneous alignment and folding of RNA sequences. [Citation Graph (, )][DBLP]
MACHOS: Markov clusters of homologous subsequences. [Citation Graph (, )][DBLP]
Classification and feature selection algorithms for multi-class CGH data. [Citation Graph (, )][DBLP]
Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. [Citation Graph (, )][DBLP]
A model of higher accuracy for the individual haplotyping problem based on weighted SNP fragments and genotype with errors. [Citation Graph (, )][DBLP]
Estimating true evolutionary distances under the DCJ model. [Citation Graph (, )][DBLP]
Efficient inference of bacterial strain trees from genome-scale multilocus data. [Citation Graph (, )][DBLP]
The multiple gene duplication problem revisited. [Citation Graph (, )][DBLP]
Nucleosome positioning from tiling microarray data. [Citation Graph (, )][DBLP]
Alignment and classification of time series gene expression in clinical studies. [Citation Graph (, )][DBLP]
Inferring differentiation pathways from gene expression. [Citation Graph (, )][DBLP]
Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. [Citation Graph (, )][DBLP]
Combinatorial influence of environmental parameters on transcription factor activity. [Citation Graph (, )][DBLP]