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Conferences in DBLP

IEEE Computer Society Bioinformatics Conference (CSB) (csb)
2004 (conf/csb/2004)

  1. Ron Shamir
    Computational Dissection of Regulatory Networks Using Diverse High-Throughput Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:2-3 [Conf]
  2. Eugene W. Myers
    Whole Genome Sequencing, Comparative Genomics, and Systems Biology. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:4- [Conf]
  3. Paul S. Meltzer, Sean Davis, Kristin Baird, Yidong Chen
    Are We There Yet? Genomic Profiling and Mechanism in Cancer Research. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:6- [Conf]
  4. Jim Kent
    Spaghetti Code, Soupy Logic, and the Expression of Genes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:7- [Conf]
  5. Stephen T. C. Wong
    High Content Cellular Analysis and Their Applications. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:8- [Conf]
  6. Sandy Shaw, Paul Shapshak
    Fractal Genomics Modeling: A New Approach to Genomic Analysis and Biomarker Discovery. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:9-17 [Conf]
  7. Hamid Bolouri
    From DNA Sequence to Network Behavior: Functional Properties of Genetic Regulatory Networks. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:18- [Conf]
  8. Chang-Heng Chang, Li-Ching Hsieh, Ta-Yuan Chen, Hong-Da Chen, Liaofu Luo, Hoong-Chien Lee
    Shannon Information in Complete Genomes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:20-30 [Conf]
  9. Hong Liu, Li Li, Asher Zilberstein, Chang S. Hahn
    Segmental Duplications Containing Tandem Repeated Genes Encoding Putative Deubiquitinating Enzymes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:31-39 [Conf]
  10. Yinhe Cao, Wen-wen Tung, Jianbo Gao
    Recurrence Time Statistics: Versatile Tools for Genomic DNA Sequence Analysis. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:40-51 [Conf]
  11. Vineet Bafna, Shaojie Zhang
    FastR: Fast Database Search Tool for Non-Coding RNA. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:52-61 [Conf]
  12. Lei Chen, Shiyong Lu, Jeffrey L. Ram
    Compressed Pattern Matching in DNA Sequences. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:62-68 [Conf]
  13. Michael Molla, Jude W. Shavlik, Thomas Albert, Todd Richmond, Steven Smith
    A Self-Tuning Method for One-Chip SNP Identification. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:69-79 [Conf]
  14. Pang Ko, Mahesh Narayanan, Anantharaman Kalyanaraman, Srinivas Aluru
    Space-Conserving Optimal DNA-Protein Alignment . [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:80-88 [Conf]
  15. Russell Schwartz
    Algorithms for Association Study Design Using a Generalized Model of Haplotype Conservation. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:90-97 [Conf]
  16. Usman Roshan, Bernard M. E. Moret, Tandy Warnow, Tiffani L. Williams
    Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:98-109 [Conf]
  17. Patricia Buendia, Giri Narasimhan
    MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:110-119 [Conf]
  18. Stefano Lonardi, Yu Luo
    Gridding and Compression of Microarray Images. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:122-130 [Conf]
  19. Sach Mukherjee, Stephen J. Roberts
    A Theoretical Analysis of Gene Selection. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:131-141 [Conf]
  20. Haifeng Li, Keshu Zhang, Tao Jiang
    Minimum Entropy Clustering and Applications to Gene Expression Analysis. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:142-151 [Conf]
  21. Rui Kuang, Eugene Ie, Ke Wang, Kai Wang, Mahira Siddiqi, Yoav Freund, Christina S. Leslie
    Profile-Based String Kernels for Remote Homology Detection and Motif Extraction. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:152-160 [Conf]
  22. Ryo Yoshida, Tomoyuki Higuchi, Seiya Imoto
    A Mixed Factors Model for Dimension Reduction and Extraction of a Group Structure in Gene Expression Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:161-172 [Conf]
  23. Zhaohui Sun, Jingyi Yang, Jitender S. Deogun
    MISAE: A New Approach for Regulatory Motif Extraction. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:173-181 [Conf]
  24. Jinze Liu, Jiong Yang, Wei Wang
    Biclustering in Gene Expression Data by Tendency. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:182-193 [Conf]
  25. Karuturi R. Krishna Murthy, Liu Jian Hua
    Improved Fourier Transform Method for Unsupervised Cell-Cycle Regulated Gene Prediction. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:194-203 [Conf]
  26. Yonghua Han, Bin Ma, Kaizhong Zhang
    SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:206-215 [Conf]
  27. Patrik D'haeseleer, George M. Church
    Estimating and Improving Protein Interaction Error Rates. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:216-223 [Conf]
  28. Tolga Can, Orhan Çamoglu, Ambuj K. Singh, Yuan-Fang Wang
    Automated Protein Classification Using Consensus Decision. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:224-235 [Conf]
  29. Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu
    Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:236-244 [Conf]
  30. Zhuozhi Wang, Kaizhong Zhang
    Multiple RNA Structure Alignment. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:246-254 [Conf]
  31. Kreshna Gopal, Tod D. Romo, James C. Sacchettini, Thomas R. Ioerger
    Weighting Features to Recognize 3D Patterns of Electron Density in X-Ray Protein Crystallography. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:255-265 [Conf]
  32. Rahul Singh
    Reasoning about Molecular Similarity and Properties. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:266-277 [Conf]
  33. Christopher James Langmead, Bruce Randall Donald
    High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:278-289 [Conf]
  34. Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
    Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:290-299 [Conf]
  35. Shu-Yun Le, Jacob V. Maizel Jr., Kaizhong Zhang
    An Algorithm for Detecting Homologues of Known Structured RNAs in Genomes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:300-310 [Conf]
  36. Arvind Gupta, Ján Manuch, Ladislav Stacho
    Inverse Protein Folding in 2D HP Mode (Extended Abstract). [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:311-318 [Conf]
  37. Lincong Wang, Bruce Randall Donald
    Analysis of a Systematic Search-Based Algorithm for Determining Protein Backbone Structure from a Minimum Number of Residual Dipolar Couplings. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:319-330 [Conf]
  38. Alon Kaufman, Martin Kupiec, Eytan Ruppin
    Multi-Knockout Genetic Network Analysis: The Rad6 Example. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:332-340 [Conf]
  39. Hiroshi Mamitsuka, Yasushi Okuno
    A Hierarchical Mixture of Markov Models for Finding Biologically Active Metabolic Paths Using Gene Expression and Protein Classes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:341-352 [Conf]
  40. Zheng Yun, Kwoh Chee Keong
    Dynamic Algorithm for Inferring Qualitative Models of Gene Regulatory Networks. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:353-362 [Conf]
  41. Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu
    Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:363-370 [Conf]
  42. Sarah E. Boyd, Maria J. García de la Banda, Robert N. Pike, James C. Whisstock, George B. Rudy
    PoPS: A Computational Tool for Modeling and Predicting Protease Specificity. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:372-381 [Conf]
  43. Huiqing Liu, Jinyan Li, Limsoon Wong
    Selection of Patient Samples and Genes for Outcome Prediction. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:382-392 [Conf]
  44. Ying Liu, Brian J. Ciliax, Karin Borges, Venu Dasigi, Ashwin Ram, Shamkant B. Navathe, Ray Dingledine
    Comparison of Two Schemes for Automatic Keyword Extraction from MEDLINE for Functional Gene Clustering. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:394-404 [Conf]
  45. Shiming Dong, Eileen Kraemer
    Calculation, Visualization, and Manipulation of MASTs (Maximum Agreement Subtrees). [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:405-414 [Conf]
  46. Raf M. Podowski, John G. Cleary, Nicholas T. Goncharoff, Gregory Amoutzias, William S. Hayes
    AZuRE, a Scalable System for Automated Term Disambiguation of Gene and Protein Names. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:415-424 [Conf]
  47. Sheng Zhong, Lu Tian, Cheng Li, Kai-Florian Storch, Wing Hung Wong
    Comparative Analysis of Gene Sets in the Gene Ontology Space under the Multiple Hypothesis Testing Framework. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:425-435 [Conf]
  48. Jinze Liu, Wei Wang, Jiong Yang
    Gene Ontology Friendly Biclustering of Expression Profiles. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:436-447 [Conf]
  49. Anguraj Sadanandam, Michelle L. Varney, Rakesh K. Singh
    High-Throughput Computational and Experimental Biology Strategy in Identifying Tumor Expressing CAMs. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:450-451 [Conf]
  50. Fang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik
    State-Space Model for Gene Regulatory Networks with Time Delays. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:454-455 [Conf]
  51. Yingxin Li, Carol A. Heckman, Julie A. Barnes
    Nonlinear Modeling on Protein Kinase C(PKC)-Epsilon Inverse Regulation of Stress Fibers in Oncogenically Transformed Cells. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:456-457 [Conf]
  52. Yizhou Xie, Xujing Wang
    Analysis of Population Dynamics in Beta-Cell Destruction Lead to Identification of Novel Candidate Genes for Type 1 Diabetes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:458-459 [Conf]
  53. Heidi J. Sofia, Abigail L. Corrigan, Kyle R. Klicker, George Chin Jr., Eric G. Stephan
    Exploring Genomic Context Patterns for Rhodobacter Sphaeroides in the HERBE Knowledge Discovery Environment. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:462-463 [Conf]
  54. Mark L. Farman, Joshua W. Gilkerson, Jerzy W. Jaromczyk, Chuck Staben
    RepeatAssembler: A Package for Annotation of Full-Length Repetitive DNA Sequences in Fungal Genomes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:464-467 [Conf]
  55. Ian Shadforth, Daniel Crowther, Conrad Bessant
    Search-Space Reduction of a Non-Redundant Peptide Database. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:470-471 [Conf]
  56. Samir V. Deshpande, Rabih E. Jabbour, Charles Wick, A. Peter Snyder
    Automated and Rapid Bacterial Identification Using LC-Mass Spectrometry with a Relational Database Management System. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:472-473 [Conf]
  57. John H. Phan, Chang F. Quo, Kejiao Guo, Weimin Feng, Geoffrey Wang, May D. Wang
    Development of a Knowledge-Based Multi-Scheme Cancer Microarray Data Analysis System. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:474-475 [Conf]
  58. Fang Liu, Tor-Kristian Jenssen, Vegard Nygaard, John Sack, Eivind Hovig
    FigSearch: Using Maximum Entropy Classifier to Categorize Biological Figures. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:476-477 [Conf]
  59. Maxim Shklar, Orit Shmueli, Liora Strichman-Almashanu, Michael Shmoish, Doron Lancet, Marilyn Safran
    GeneTide: Terra Incognita Discovery Endeavor Mining ESTs and Expression Data to Elucidate Known and De-Novo GeneCards Genes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:478-479 [Conf]
  60. Mehmet Koyutürk, Wojciech Szpankowski, Ananth Grama
    Biclustering Gene-Feature Matrices for Statistically Significant Dense Patterns. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:480-484 [Conf]
  61. Xuanfu Wu, Zhengxin Chen
    Recognition of Exon/Intron Boundaries Using Dynamic Ensembles. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:485-486 [Conf]
  62. Sach Mukherjee, Stephen J. Roberts
    Probabilistic Consistency Analysis for Gene Selection. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:487-488 [Conf]
  63. Zoé Lacroix, Kaushal Parekh, Hasan Davulcu, I. V. Ramakrishnan, Nikeeta Julasana
    Automating the Biological Data Collection Process with Agents. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:489-490 [Conf]
  64. Jeffrey Stone, Xindong Wu, Marc Greenblatt
    An Intelligent Digital Library System for Biologists. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:491-492 [Conf]
  65. Huimin Geng, Dhundy Bastola, Hesham H. Ali
    A New Approach to Clustering Biological Data Using Message Passing. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:493-494 [Conf]
  66. Daniel Quest, Hesham H. Ali
    Ontology Specific Data Mining Based on Dynamic Grammars. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:495-496 [Conf]
  67. Yuhang Wang, Fillia Makedon
    Application of Relief-F Feature Filtering Algorithm to Selecting Informative Genes for Cancer Classification Using Microarray Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:497-498 [Conf]
  68. Andrey Gorin, Robert M. Day, Andrey Borziak, Michael B. Strader, Gregory B. Hurst, Tema Fridman
    Probability Profile Method -- New Approach to Data Analysis in Tandem Mass Spectrometry. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:499-502 [Conf]
  69. Tomonori Izumitani, Hirotoshi Taira, Hideto Kazawa, Eisaku Maeda
    Assigning Gene Ontology Categories (GO) to Yeast Genes Using Text-Based Supervised Learning Methods. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:503-504 [Conf]
  70. Robert M. Day, Andrey Borziak, Andrey Gorin
    PPM-Chain De novo Peptide Identification Program Comparable in Performance to Sequest. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:505-508 [Conf]
  71. Zhenhua Guo, John W. Stiller
    Comparative Genomics of Cyclin-Dependent Kinases Suggest Co-Evolution of the RNAP II C-Terminal Domain and CTD-Directed CDKs. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:510-511 [Conf]
  72. Terrence S. T. Mak, K. P. Lam
    Embedded Computation of Maximum-Likelihood Phylogeny Inference Using Platform FPGA. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:512-514 [Conf]
  73. Boris Budagyan, Ann E. Loraine
    Gene Length and Alternative Transcription in Fruit Fly. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:515-516 [Conf]
  74. Francisca Zanoguera, Massimo de Francesco
    Protein Classification into Domains of Life Using Markov Chain Models. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:517-519 [Conf]
  75. Weihong Qi, David W. Lacher, Alyssa C. Bumbaugh, Katie E. Hyma, Lindsey M. Ouellette, Teresa M. Large, Cheryl L. Tarr, Thomas S. Whittam
    EcMLST: An Online Database for Multi Locus Sequence Typing of Pathogenic Escherichia coli. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:520-521 [Conf]
  76. Fei Nan, Donald A. Adjeroh
    On Complexity Measures for Biological Sequences. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:522-526 [Conf]
  77. Allison Griggs, Shuba Gopal
    A Markov Model Based Gene Discrimination Approach in Trypanosomes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:528- [Conf]
  78. Jonathan J. Ward, Jaspreet Singh Sodhi, Bernard F. Buxton, David T. Jones
    Predicting Gene Ontology Annotations from Sequence Data Using Kernel-Based Machine Learning Algorithms. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:529-530 [Conf]
  79. Yan Qi 0003, Jianbo Gao, Yinhe Cao, Wen-wen Tung
    Deriving a Novel Codon Index by Combining Period-3 and Fractal Features of DNA Sequences. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:531-532 [Conf]
  80. Kirt Noël, Kay C. Wiese
    Exploring the Use of Stem-Loop Characteristics for Pinpointing Structural RNA Genes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:533-534 [Conf]
  81. Richard F. Meraz, Xiaofeng He, Chris H. Q. Ding, Stephen R. Holbrook
    Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:535-538 [Conf]
  82. Peter M. Kasson, Johannes B. Huppa, Mark M. Davis, Axel T. Brünger
    Quantitative Analysis of Membrane Protein Localization and Signaling. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:540-541 [Conf]
  83. Zemin Ning, William Spooner, Adam Spargo, Steven Leonard, Mark Rae, Antony Cox
    The SSAHA Trace Server. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:544-545 [Conf]
  84. Grace Steele, Vojislav Stojkovic
    Agent-Oriented Approach to DNA Computing. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:546-551 [Conf]
  85. Jung-Yup Kang, Sandeep Gupta, Jean-Luc Gaudiot
    Accelerating the Kernels of BLAST with an Efficient PIM (Processor-In-Memory) Architecture. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:552-553 [Conf]
  86. Xiao Yang
    Qvalue Method May Not Always Control False Discovery Rate in Genomics Applications. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:556-557 [Conf]
  87. Dongqing Liu, Ting Shi, Joseph A. DiDonato, John D. Carpten, Jianping Zhu, Zhong-Hui Duan
    Application of a Genetic Algorithm/K-Nearest Neighbor Method to the Classification of Renal Cell Carcinoma. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:558-559 [Conf]
  88. Haili Jiao, Peixin Yang, Zhengxin Chen
    Mining Estrogen Microarray Data: An Approach Using Contrast Data Analysis. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:560-561 [Conf]
  89. Weimin Feng, Gaurav Tuteja, May D. Wang
    EGOMinor: A Genomics and Proteomics Data Computation and Interpretation System for Biomedical Applications. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:562-563 [Conf]
  90. Bill Martin, Robert M. Horton
    A Java Program to Create Simulated Microarray Images. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:564-565 [Conf]
  91. Shawn Martin, George Davidson, Elebeoba E. May, Jean-Loup Faulon, Margaret Werner-Washburne
    Inferring Genetic Networks from Microarray Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:566-569 [Conf]
  92. Nini Rao, Simon J. Shepherd
    Extracting Characteristic Patterns from Genome - Wide Expression Data by Non-Negative Matrix Factorization. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:570-571 [Conf]
  93. Hyunsoo Kim, Gene H. Golub, Haesun Park
    Imputation of Missing Values in DNA Microarray Gene Expression Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:572-573 [Conf]
  94. Qian Diao, We Hu, Hao Zhong, Juntao Li, Feng Xue, Tao Wang, Yimin Zhang
    Disease Gene Explorer: Display Disease Gene Dependency by Combining Bayesian Networks with Clustering. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:574-575 [Conf]
  95. Yuan-Kai Wang, Cheng-Wei Huang
    DNA Microarray Image Analysis Using Active Contour Model. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:576-577 [Conf]
  96. Danny Barash, Dorin Comaniciu
    Meanshift Clustering for DNA Microarray Analysis. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:578-579 [Conf]
  97. Yizhou Xie, Soumitra Ghosh, Parthav Jailwalia, Xujing Wang
    The Dynamic Range of Gene Expressions Depend on Their Ontology. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:580-581 [Conf]
  98. Hui Fang, ChengXiang Zhai, Lei Liu, Jiong Yang
    Subspace Clustering for Microarray Data Analysis: Multiple Criteria and Significance Assessment. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:582-583 [Conf]
  99. John A. Berger, Sampsa Hautaniemi, Sanjit K. Mitra
    Comparative Analysis of Gene Expression and DNA Copy Number Data for Pancreatic and Breast Cancers Using an Orthogonal Decomposition. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:584-585 [Conf]
  100. Geoffrey Yang, Ming-Hsiu Ho, Earl Hubbell
    High-Throughput Microarray-Based Genotyping. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:586-587 [Conf]
  101. Lawrence D'Antonio, Paramjeet Bagga
    Computational Methods for Predicting Intramolecular G-Quadruplexes in Nucleotide Sequences. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:590-591 [Conf]
  102. Xiequn Xu, W. Bradley Barbazuk, Yucheng Feng, Karel Schubert, Agnes P. Chan, Geo Pertea, Li Zheng, Foo Cheung, Yuandan Lee
    Gene Recovery of Two Genome-Filtration Sequencing Techniques When Applied to the Maize Genome. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:594-595 [Conf]
  103. Zoé Lacroix, Kaushal Parekh, Louiqa Raschid, Maria-Esther Vidal
    Navigating through the Biological Maze. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:594-595 [Conf]
  104. Zoé Lacroix, Vidyadhari Edupuganti
    How Biological Source Capabilities May Affect the Data Collection Process. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:596-597 [Conf]
  105. Stephan Heymann, Felix Naumann, Louiqa Raschid, Peter Rieger
    Labeling and Enhancing Life Sciences Links. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:598-599 [Conf]
  106. Alireza Darvish, EunSang Bak, Kayvan Gopalakrishnan, R. H. Zadeh, Kayvan Najarian
    A New Hierarchical Method for Identification of Dynamic Regulatory Pathways from Time-Series DNA Microarray Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:602-603 [Conf]
  107. Pei Wang, Young Kim, Jonathan Pollack, Robert Tibshirani
    Boosted PRIM with Application to Searching for Oncogenic Pathway of Lung Cancer. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:604-609 [Conf]
  108. Fang-Xiang Wu, Anthony J. Kusalik, Wen-Jun Zhang
    A. Genetic Algorithm for Inferring Time Delays in Gene Regulatory Networks. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:610-611 [Conf]
  109. Peng Wang, Zhengchang Su, PhuongAn Dam, Ying Xu
    A Knowledge Base for Computational Pathway Reconstruction. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:612-613 [Conf]
  110. PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu
    In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:614-615 [Conf]
  111. Stephen A. Racunas, Christopher Griffin, Nigam Shah
    A Finite Model Theory for Biological Hypotheses. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:616-620 [Conf]
  112. Hee Young Kang, Hak Yong Kim
    Functional Modules from Protein Networks of Kinome and Cell Cycle in Saccharomyces Cerevisiae. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:621-622 [Conf]
  113. Olusola C. Idowu, Steven J. Lynden, Malcolm P. Young, Péter András
    Bacillus Subtilis Protein Interaction Network Analysis. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:623-625 [Conf]
  114. Jean-Loup Faulon, Shawn Martin, Robert D. Carr
    Dynamical Robustness in Gene Regulatory Networks. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:626-627 [Conf]
  115. Catalin Barbacioru, Daniel J. Cowden, Joel H. Saltz
    An Algorithm for Reconstruction of Markov Blankets in Bayesian Networks of Gene Expression Datasets. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:628-629 [Conf]
  116. Jianbo Gao, Jesse S. A. Bridgewater, Vwani P. Roychowdhury
    Synchronized Oscillations and Chaos in Coupled Genetic Repressilators. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:630-631 [Conf]
  117. Kohei Taki, Reiji Teramoto, Yoichi Takenaka, Hideo Matsuda
    Inference of Gene Regulatory Network Based on Module Network Model with Gene Functional Classifications. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:632-633 [Conf]
  118. Shoko Miyake, Yoichi Takenaka, Hideo Matsuda
    A Graph Analysis Method to Detect Metabolic Sub-Networks Based on Phylogenetic Profile. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:634-635 [Conf]
  119. Lie-Quan Lee, Jeff Varner, Kwok Ko
    Parallel Extreme Pathway Computation for Metabolic Networks. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:636-639 [Conf]
  120. Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, Ying Xu
    Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:640-641 [Conf]
  121. Fenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu
    Pathway Mapping with Operon Information: An Integer-Programming Method. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:642-643 [Conf]
  122. Karen Sachs, Omar D. Perez, Dana Pe'er, Garry P. Nolan, David K. Gifford, Tommi Jaakkola, Douglas A. Lauffenburger
    Analysis of Signaling Pathways in Human T-Cells Using Bayesian Network Modeling of Single Cell Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:644- [Conf]
  123. Wei Wang, Gregory F. Cooper
    An Bayesian Method for Biological Pathway Discovery from High-Throughput Experimental Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:645-646 [Conf]
  124. Tie Wang, Jeffrey W. Touchman, Guoliang Xue
    Applying Two-Level Simulated Annealing on Bayesian Structure Learning to Infer Genetic Networks. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:647-648 [Conf]
  125. Hsiao Ping Lee, Tzu Fang Sheu, Yin-Te Tsai, Ching Hua Shih, Chuan Yi Tang
    A Efficient Algorithm for Unique Signature Discovery on Whole-Genome EST Databases. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:650-651 [Conf]
  126. Yan Ding, Hong Cao, Shu Wen
    VirusFinder: A Web-Based Virus Identification System Using Viral Nucleotide Signatures. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:652-653 [Conf]
  127. Jian Liu, Ming Li
    Finding Cancer Biomarkers from Mass Spectrometry Data by Decision Lists. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:654-655 [Conf]
  128. Hyunsoo Kim, Haesun Park
    Incremental and Decremental Least Squares Support Vector Machine and Its Application to Drug Design. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:656-657 [Conf]
  129. Eugene Lin, Dennis Chen, Yuchi Hwang, Ashely Chang, Z. John Gu
    A Prediction Model for the Drug Efficacy of Interferon in CHC Patients Based on SNPs. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:658-659 [Conf]
  130. Oriel Bergig, Danny Barash, Klara Kedem
    RNA Motif Search Using the Structure to String (STR2) Method. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:660-661 [Conf]
  131. Ravi Vijaya Satya, Amar Mukherjee
    PRUNER: Algorithms for Finding Monad Patterns in DNA Sequences. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:662-665 [Conf]
  132. Victor Olman, Jizhu Lu, PhuongAn Dam, Zhengchang Su, Ying Xu
    CUBIC: Search for Binding Sites. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:666-667 [Conf]
  133. Kevin Crosby, Paula Gabbert
    BioSPRINT: Classification of Intron and Exon Sequences Using the SPRINT Algorithm. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:668-669 [Conf]
  134. Xutao Deng, Hesham H. Ali
    A Hidden Markov Model for Gene Function Prediction from Sequential Expression Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:670-671 [Conf]
  135. Alexandre Tchourbanov, Hesham H. Ali, Jitender S. Deogun
    Using Enhancing Signals to Improve Specificity of ab initio Splice Site Sensors. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:672-673 [Conf]
  136. Xiaolu Huang, Hesham H. Ali, Anguraj Sadanandam, Rakesh Singh
    SRPVS: A New Motif Searching Algorithm for Protein Analysis. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:674-675 [Conf]
  137. Donald A. Adjeroh, Jianan Feng
    Locating All Tandem Repeat Families in a Sequence. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:676-681 [Conf]
  138. Youlian Pan, Brandon Smith, Hung Fang, A. Fazel Famili, Marianna Sikorska, P. Roy Walker
    Selection of Putative Cis-Regulatory Motifs through Regional and Global Conservation. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:684-685 [Conf]
  139. Yasuo Matsuyama, Ryo Kawamura
    Promoter Recognition for E. coli DNA Segments by Independent Component Analysis. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:686-691 [Conf]
  140. Krishna Gopalakrishnan, R. H. Zadeh, Kayvan Najarian, Alireza Darvish
    Computational Analysis and Classification of p53 Mutants According to Primary Structure. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:694-695 [Conf]
  141. Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Al Geist, Nagiza F. Samatova
    In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate Specificity. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:696-697 [Conf]
  142. Chenyang Cui, Donghui Wang, Jiaoying Shi
    Comparing 3D Protein Structures Similarity by Using Fractal Features. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:698-699 [Conf]
  143. Peng Wang, Zhengchang Su, Jun-tao Guo, Ying Xu
    Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:700-701 [Conf]
  144. Jaspreet Singh Sodhi, Liam J. McGuffin, Kevin Bryson, Jonathan J. Ward, Lorenz Wernisch, David T. Jones
    Automatic Prediction of Functional Site Regions in Low-Resolution Protein Structures. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:702-703 [Conf]
  145. Barrett Abel, Martin Gollery
    BPAP: A Computational Tool for Whole Genome Analysis and Annotation. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:704-705 [Conf]
  146. Todd J. Taylor, Iosif I. Vaisman
    A New Method of Secondary Structure Assignment Based on the Delaunay Tessellation of Protein Structures. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:706-707 [Conf]
  147. Jun-tao Guo, Ying Xu
    Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation Domain. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:708-709 [Conf]
  148. Sumeet Dua, Naveen Kandiraju
    A Novel Computational Framework for Structural Classification of Proteins Using Local Geometric Parameter Matching. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:710-711 [Conf]
  149. K. Arun, Christopher James Langmead
    Large-Scale Testing of Chemical Shift Prediction Algorithms and Improved Machine Learning-Based Approaches to Shift Prediction. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:712-713 [Conf]
  150. Chris H. Q. Ding, Richard F. Meraz, Xiaofeng He, Stephen R. Holbrook
    Contraction Graphs for Representation and Analysis of RNA Secondary Structure. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:716-717 [Conf]
  151. Christopher Maher, Marja Timmermans, Lincoln Stein, Doreen Ware
    Identifying MicroRNAs in Plant Genomes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:718-723 [Conf]
  152. Assaf Avihoo, Nir Dromi, Danny Barash
    Fine-Grain Matrix Graph Representation for Predicting Mutations Leading to Conformational Rearrangements in Small RNAs. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:724-725 [Conf]
  153. Robert C. Edgar
    MUSCLE: Multiple Sequence Alignment with Improved Accuracy and Speed. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:728-729 [Conf]
  154. Greg Knowles, Paul Gardner-Stephen
    A New Hardware Architecture for Genomic and Proteomic Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:730-731 [Conf]
  155. Paul Gardner-Stephen, Greg Knowles
    DASH: Localising Dynamic Programming for Order of Magnitude Faster, Accurate Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:732-735 [Conf]
  156. Daniela Puiu
    SUPERCONTIGS: A Contig Scaffolding Tool. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:736-737 [Conf]
  157. Aaron E. Darling, Bob Mau, Mark Craven, Nicole T. Perna
    Multiple Alignment of Rearranged Genomes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:738-739 [Conf]
  158. Maulik K. Shah, HoJoon Lee, Stephanie A. Rogers, Jeffrey W. Touchman
    An Exhaustive Genome Assembly Algorithm Using K-Mers to Indirectly Perform N-Squared Comparisons in O(N). [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:740-741 [Conf]
  159. Shiori Furihata, Toshikazu Ito, Naoyuki Kamatani
    Association Tests and Estimation of Haplotype Frequencies and of Penetrance-Related Parameters in a Case-Control Study. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:744-745 [Conf]
  160. Ruiqi Wang, Junya Nakai, Mitsuyasu Seo, Luonan Chen
    Designing Synthetic Biological Systems by Multiple Time Scale Networks. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:748-749 [Conf]
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