Conferences in DBLP
Ron Shamir Computational Dissection of Regulatory Networks Using Diverse High-Throughput Data. [Citation Graph (0, 0)][DBLP ] Conf ] Eugene W. Myers Whole Genome Sequencing, Comparative Genomics, and Systems Biology. [Citation Graph (0, 0)][DBLP ] Conf ] Paul S. Meltzer , Sean Davis , Kristin Baird , Yidong Chen Are We There Yet? Genomic Profiling and Mechanism in Cancer Research. [Citation Graph (0, 0)][DBLP ] Conf ] Jim Kent Spaghetti Code, Soupy Logic, and the Expression of Genes. [Citation Graph (0, 0)][DBLP ] Conf ] Stephen T. C. Wong High Content Cellular Analysis and Their Applications. [Citation Graph (0, 0)][DBLP ] Conf ] Sandy Shaw , Paul Shapshak Fractal Genomics Modeling: A New Approach to Genomic Analysis and Biomarker Discovery. [Citation Graph (0, 0)][DBLP ] Conf ] Hamid Bolouri From DNA Sequence to Network Behavior: Functional Properties of Genetic Regulatory Networks. [Citation Graph (0, 0)][DBLP ] Conf ] Chang-Heng Chang , Li-Ching Hsieh , Ta-Yuan Chen , Hong-Da Chen , Liaofu Luo , Hoong-Chien Lee Shannon Information in Complete Genomes. [Citation Graph (0, 0)][DBLP ] Conf ] Hong Liu , Li Li , Asher Zilberstein , Chang S. Hahn Segmental Duplications Containing Tandem Repeated Genes Encoding Putative Deubiquitinating Enzymes. [Citation Graph (0, 0)][DBLP ] Conf ] Yinhe Cao , Wen-wen Tung , Jianbo Gao Recurrence Time Statistics: Versatile Tools for Genomic DNA Sequence Analysis. [Citation Graph (0, 0)][DBLP ] Conf ] Vineet Bafna , Shaojie Zhang FastR: Fast Database Search Tool for Non-Coding RNA. [Citation Graph (0, 0)][DBLP ] Conf ] Lei Chen , Shiyong Lu , Jeffrey L. Ram Compressed Pattern Matching in DNA Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Michael Molla , Jude W. Shavlik , Thomas Albert , Todd Richmond , Steven Smith A Self-Tuning Method for One-Chip SNP Identification. [Citation Graph (0, 0)][DBLP ] Conf ] Pang Ko , Mahesh Narayanan , Anantharaman Kalyanaraman , Srinivas Aluru Space-Conserving Optimal DNA-Protein Alignment . [Citation Graph (0, 0)][DBLP ] Conf ] Russell Schwartz Algorithms for Association Study Design Using a Generalized Model of Haplotype Conservation. [Citation Graph (0, 0)][DBLP ] Conf ] Usman Roshan , Bernard M. E. Moret , Tandy Warnow , Tiffani L. Williams Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees. [Citation Graph (0, 0)][DBLP ] Conf ] Patricia Buendia , Giri Narasimhan MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies. [Citation Graph (0, 0)][DBLP ] Conf ] Stefano Lonardi , Yu Luo Gridding and Compression of Microarray Images. [Citation Graph (0, 0)][DBLP ] Conf ] Sach Mukherjee , Stephen J. Roberts A Theoretical Analysis of Gene Selection. [Citation Graph (0, 0)][DBLP ] Conf ] Haifeng Li , Keshu Zhang , Tao Jiang Minimum Entropy Clustering and Applications to Gene Expression Analysis. [Citation Graph (0, 0)][DBLP ] Conf ] Rui Kuang , Eugene Ie , Ke Wang , Kai Wang , Mahira Siddiqi , Yoav Freund , Christina S. Leslie Profile-Based String Kernels for Remote Homology Detection and Motif Extraction. [Citation Graph (0, 0)][DBLP ] Conf ] Ryo Yoshida , Tomoyuki Higuchi , Seiya Imoto A Mixed Factors Model for Dimension Reduction and Extraction of a Group Structure in Gene Expression Data. [Citation Graph (0, 0)][DBLP ] Conf ] Zhaohui Sun , Jingyi Yang , Jitender S. Deogun MISAE: A New Approach for Regulatory Motif Extraction. [Citation Graph (0, 0)][DBLP ] Conf ] Jinze Liu , Jiong Yang , Wei Wang Biclustering in Gene Expression Data by Tendency. [Citation Graph (0, 0)][DBLP ] Conf ] Karuturi R. Krishna Murthy , Liu Jian Hua Improved Fourier Transform Method for Unsupervised Cell-Cycle Regulated Gene Prediction. [Citation Graph (0, 0)][DBLP ] Conf ] Yonghua Han , Bin Ma , Kaizhong Zhang SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error. [Citation Graph (0, 0)][DBLP ] Conf ] Patrik D'haeseleer , George M. Church Estimating and Improving Protein Interaction Error Rates. [Citation Graph (0, 0)][DBLP ] Conf ] Tolga Can , Orhan Çamoglu , Ambuj K. Singh , Yuan-Fang Wang Automated Protein Classification Using Consensus Decision. [Citation Graph (0, 0)][DBLP ] Conf ] Bo Yan , Chongle Pan , Victor Olman , Robert L. Hettich , Ying Xu Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. [Citation Graph (0, 0)][DBLP ] Conf ] Zhuozhi Wang , Kaizhong Zhang Multiple RNA Structure Alignment. [Citation Graph (0, 0)][DBLP ] Conf ] Kreshna Gopal , Tod D. Romo , James C. Sacchettini , Thomas R. Ioerger Weighting Features to Recognize 3D Patterns of Electron Density in X-Ray Protein Crystallography. [Citation Graph (0, 0)][DBLP ] Conf ] Rahul Singh Reasoning about Molecular Similarity and Properties. [Citation Graph (0, 0)][DBLP ] Conf ] Christopher James Langmead , Bruce Randall Donald High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment. [Citation Graph (0, 0)][DBLP ] Conf ] Hiroshi Matsui , Kengo Sato , Yasubumi Sakakibara Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures. [Citation Graph (0, 0)][DBLP ] Conf ] Shu-Yun Le , Jacob V. Maizel Jr. , Kaizhong Zhang An Algorithm for Detecting Homologues of Known Structured RNAs in Genomes. [Citation Graph (0, 0)][DBLP ] Conf ] Arvind Gupta , Ján Manuch , Ladislav Stacho Inverse Protein Folding in 2D HP Mode (Extended Abstract). [Citation Graph (0, 0)][DBLP ] Conf ] Lincong Wang , Bruce Randall Donald Analysis of a Systematic Search-Based Algorithm for Determining Protein Backbone Structure from a Minimum Number of Residual Dipolar Couplings. [Citation Graph (0, 0)][DBLP ] Conf ] Alon Kaufman , Martin Kupiec , Eytan Ruppin Multi-Knockout Genetic Network Analysis: The Rad6 Example. [Citation Graph (0, 0)][DBLP ] Conf ] Hiroshi Mamitsuka , Yasushi Okuno A Hierarchical Mixture of Markov Models for Finding Biologically Active Metabolic Paths Using Gene Expression and Protein Classes. [Citation Graph (0, 0)][DBLP ] Conf ] Zheng Yun , Kwoh Chee Keong Dynamic Algorithm for Inferring Qualitative Models of Gene Regulatory Networks. [Citation Graph (0, 0)][DBLP ] Conf ] Victor Olman , Hanchuan Peng , Zhengchang Su , Ying Xu Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. [Citation Graph (0, 0)][DBLP ] Conf ] Sarah E. Boyd , Maria J. García de la Banda , Robert N. Pike , James C. Whisstock , George B. Rudy PoPS: A Computational Tool for Modeling and Predicting Protease Specificity. [Citation Graph (0, 0)][DBLP ] Conf ] Huiqing Liu , Jinyan Li , Limsoon Wong Selection of Patient Samples and Genes for Outcome Prediction. [Citation Graph (0, 0)][DBLP ] Conf ] Ying Liu , Brian J. Ciliax , Karin Borges , Venu Dasigi , Ashwin Ram , Shamkant B. Navathe , Ray Dingledine Comparison of Two Schemes for Automatic Keyword Extraction from MEDLINE for Functional Gene Clustering. [Citation Graph (0, 0)][DBLP ] Conf ] Shiming Dong , Eileen Kraemer Calculation, Visualization, and Manipulation of MASTs (Maximum Agreement Subtrees). [Citation Graph (0, 0)][DBLP ] Conf ] Raf M. Podowski , John G. Cleary , Nicholas T. Goncharoff , Gregory Amoutzias , William S. Hayes AZuRE, a Scalable System for Automated Term Disambiguation of Gene and Protein Names. [Citation Graph (0, 0)][DBLP ] Conf ] Sheng Zhong , Lu Tian , Cheng Li , Kai-Florian Storch , Wing Hung Wong Comparative Analysis of Gene Sets in the Gene Ontology Space under the Multiple Hypothesis Testing Framework. [Citation Graph (0, 0)][DBLP ] Conf ] Jinze Liu , Wei Wang , Jiong Yang Gene Ontology Friendly Biclustering of Expression Profiles. [Citation Graph (0, 0)][DBLP ] Conf ] Anguraj Sadanandam , Michelle L. Varney , Rakesh K. Singh High-Throughput Computational and Experimental Biology Strategy in Identifying Tumor Expressing CAMs. [Citation Graph (0, 0)][DBLP ] Conf ] Fang-Xiang Wu , Wen-Jun Zhang , Anthony J. Kusalik State-Space Model for Gene Regulatory Networks with Time Delays. [Citation Graph (0, 0)][DBLP ] Conf ] Yingxin Li , Carol A. Heckman , Julie A. Barnes Nonlinear Modeling on Protein Kinase C(PKC)-Epsilon Inverse Regulation of Stress Fibers in Oncogenically Transformed Cells. [Citation Graph (0, 0)][DBLP ] Conf ] Yizhou Xie , Xujing Wang Analysis of Population Dynamics in Beta-Cell Destruction Lead to Identification of Novel Candidate Genes for Type 1 Diabetes. [Citation Graph (0, 0)][DBLP ] Conf ] Heidi J. Sofia , Abigail L. Corrigan , Kyle R. Klicker , George Chin Jr. , Eric G. Stephan Exploring Genomic Context Patterns for Rhodobacter Sphaeroides in the HERBE Knowledge Discovery Environment. [Citation Graph (0, 0)][DBLP ] Conf ] Mark L. Farman , Joshua W. Gilkerson , Jerzy W. Jaromczyk , Chuck Staben RepeatAssembler: A Package for Annotation of Full-Length Repetitive DNA Sequences in Fungal Genomes. [Citation Graph (0, 0)][DBLP ] Conf ] Ian Shadforth , Daniel Crowther , Conrad Bessant Search-Space Reduction of a Non-Redundant Peptide Database. [Citation Graph (0, 0)][DBLP ] Conf ] Samir V. Deshpande , Rabih E. Jabbour , Charles Wick , A. Peter Snyder Automated and Rapid Bacterial Identification Using LC-Mass Spectrometry with a Relational Database Management System. [Citation Graph (0, 0)][DBLP ] Conf ] John H. Phan , Chang F. Quo , Kejiao Guo , Weimin Feng , Geoffrey Wang , May D. Wang Development of a Knowledge-Based Multi-Scheme Cancer Microarray Data Analysis System. [Citation Graph (0, 0)][DBLP ] Conf ] Fang Liu , Tor-Kristian Jenssen , Vegard Nygaard , John Sack , Eivind Hovig FigSearch: Using Maximum Entropy Classifier to Categorize Biological Figures. [Citation Graph (0, 0)][DBLP ] Conf ] Maxim Shklar , Orit Shmueli , Liora Strichman-Almashanu , Michael Shmoish , Doron Lancet , Marilyn Safran GeneTide: Terra Incognita Discovery Endeavor Mining ESTs and Expression Data to Elucidate Known and De-Novo GeneCards Genes. [Citation Graph (0, 0)][DBLP ] Conf ] Mehmet Koyutürk , Wojciech Szpankowski , Ananth Grama Biclustering Gene-Feature Matrices for Statistically Significant Dense Patterns. [Citation Graph (0, 0)][DBLP ] Conf ] Xuanfu Wu , Zhengxin Chen Recognition of Exon/Intron Boundaries Using Dynamic Ensembles. [Citation Graph (0, 0)][DBLP ] Conf ] Sach Mukherjee , Stephen J. Roberts Probabilistic Consistency Analysis for Gene Selection. [Citation Graph (0, 0)][DBLP ] Conf ] Zoé Lacroix , Kaushal Parekh , Hasan Davulcu , I. V. Ramakrishnan , Nikeeta Julasana Automating the Biological Data Collection Process with Agents. [Citation Graph (0, 0)][DBLP ] Conf ] Jeffrey Stone , Xindong Wu , Marc Greenblatt An Intelligent Digital Library System for Biologists. [Citation Graph (0, 0)][DBLP ] Conf ] Huimin Geng , Dhundy Bastola , Hesham H. Ali A New Approach to Clustering Biological Data Using Message Passing. [Citation Graph (0, 0)][DBLP ] Conf ] Daniel Quest , Hesham H. Ali Ontology Specific Data Mining Based on Dynamic Grammars. [Citation Graph (0, 0)][DBLP ] Conf ] Yuhang Wang , Fillia Makedon Application of Relief-F Feature Filtering Algorithm to Selecting Informative Genes for Cancer Classification Using Microarray Data. [Citation Graph (0, 0)][DBLP ] Conf ] Andrey Gorin , Robert M. Day , Andrey Borziak , Michael B. Strader , Gregory B. Hurst , Tema Fridman Probability Profile Method -- New Approach to Data Analysis in Tandem Mass Spectrometry. [Citation Graph (0, 0)][DBLP ] Conf ] Tomonori Izumitani , Hirotoshi Taira , Hideto Kazawa , Eisaku Maeda Assigning Gene Ontology Categories (GO) to Yeast Genes Using Text-Based Supervised Learning Methods. [Citation Graph (0, 0)][DBLP ] Conf ] Robert M. Day , Andrey Borziak , Andrey Gorin PPM-Chain De novo Peptide Identification Program Comparable in Performance to Sequest. [Citation Graph (0, 0)][DBLP ] Conf ] Zhenhua Guo , John W. Stiller Comparative Genomics of Cyclin-Dependent Kinases Suggest Co-Evolution of the RNAP II C-Terminal Domain and CTD-Directed CDKs. [Citation Graph (0, 0)][DBLP ] Conf ] Terrence S. T. Mak , K. P. Lam Embedded Computation of Maximum-Likelihood Phylogeny Inference Using Platform FPGA. [Citation Graph (0, 0)][DBLP ] Conf ] Boris Budagyan , Ann E. Loraine Gene Length and Alternative Transcription in Fruit Fly. [Citation Graph (0, 0)][DBLP ] Conf ] Francisca Zanoguera , Massimo de Francesco Protein Classification into Domains of Life Using Markov Chain Models. [Citation Graph (0, 0)][DBLP ] Conf ] Weihong Qi , David W. Lacher , Alyssa C. Bumbaugh , Katie E. Hyma , Lindsey M. Ouellette , Teresa M. Large , Cheryl L. Tarr , Thomas S. Whittam EcMLST: An Online Database for Multi Locus Sequence Typing of Pathogenic Escherichia coli. [Citation Graph (0, 0)][DBLP ] Conf ] Fei Nan , Donald A. Adjeroh On Complexity Measures for Biological Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Allison Griggs , Shuba Gopal A Markov Model Based Gene Discrimination Approach in Trypanosomes. [Citation Graph (0, 0)][DBLP ] Conf ] Jonathan J. Ward , Jaspreet Singh Sodhi , Bernard F. Buxton , David T. Jones Predicting Gene Ontology Annotations from Sequence Data Using Kernel-Based Machine Learning Algorithms. [Citation Graph (0, 0)][DBLP ] Conf ] Yan Qi 0003 , Jianbo Gao , Yinhe Cao , Wen-wen Tung Deriving a Novel Codon Index by Combining Period-3 and Fractal Features of DNA Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Kirt Noël , Kay C. Wiese Exploring the Use of Stem-Loop Characteristics for Pinpointing Structural RNA Genes. [Citation Graph (0, 0)][DBLP ] Conf ] Richard F. Meraz , Xiaofeng He , Chris H. Q. Ding , Stephen R. Holbrook Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli. [Citation Graph (0, 0)][DBLP ] Conf ] Peter M. Kasson , Johannes B. Huppa , Mark M. Davis , Axel T. Brünger Quantitative Analysis of Membrane Protein Localization and Signaling. [Citation Graph (0, 0)][DBLP ] Conf ] Zemin Ning , William Spooner , Adam Spargo , Steven Leonard , Mark Rae , Antony Cox The SSAHA Trace Server. [Citation Graph (0, 0)][DBLP ] Conf ] Grace Steele , Vojislav Stojkovic Agent-Oriented Approach to DNA Computing. [Citation Graph (0, 0)][DBLP ] Conf ] Jung-Yup Kang , Sandeep Gupta , Jean-Luc Gaudiot Accelerating the Kernels of BLAST with an Efficient PIM (Processor-In-Memory) Architecture. [Citation Graph (0, 0)][DBLP ] Conf ] Xiao Yang Qvalue Method May Not Always Control False Discovery Rate in Genomics Applications. [Citation Graph (0, 0)][DBLP ] Conf ] Dongqing Liu , Ting Shi , Joseph A. DiDonato , John D. Carpten , Jianping Zhu , Zhong-Hui Duan Application of a Genetic Algorithm/K-Nearest Neighbor Method to the Classification of Renal Cell Carcinoma. [Citation Graph (0, 0)][DBLP ] Conf ] Haili Jiao , Peixin Yang , Zhengxin Chen Mining Estrogen Microarray Data: An Approach Using Contrast Data Analysis. [Citation Graph (0, 0)][DBLP ] Conf ] Weimin Feng , Gaurav Tuteja , May D. Wang EGOMinor: A Genomics and Proteomics Data Computation and Interpretation System for Biomedical Applications. [Citation Graph (0, 0)][DBLP ] Conf ] Bill Martin , Robert M. Horton A Java Program to Create Simulated Microarray Images. [Citation Graph (0, 0)][DBLP ] Conf ] Shawn Martin , George Davidson , Elebeoba E. May , Jean-Loup Faulon , Margaret Werner-Washburne Inferring Genetic Networks from Microarray Data. [Citation Graph (0, 0)][DBLP ] Conf ] Nini Rao , Simon J. Shepherd Extracting Characteristic Patterns from Genome - Wide Expression Data by Non-Negative Matrix Factorization. [Citation Graph (0, 0)][DBLP ] Conf ] Hyunsoo Kim , Gene H. Golub , Haesun Park Imputation of Missing Values in DNA Microarray Gene Expression Data. [Citation Graph (0, 0)][DBLP ] Conf ] Qian Diao , We Hu , Hao Zhong , Juntao Li , Feng Xue , Tao Wang , Yimin Zhang Disease Gene Explorer: Display Disease Gene Dependency by Combining Bayesian Networks with Clustering. [Citation Graph (0, 0)][DBLP ] Conf ] Yuan-Kai Wang , Cheng-Wei Huang DNA Microarray Image Analysis Using Active Contour Model. [Citation Graph (0, 0)][DBLP ] Conf ] Danny Barash , Dorin Comaniciu Meanshift Clustering for DNA Microarray Analysis. [Citation Graph (0, 0)][DBLP ] Conf ] Yizhou Xie , Soumitra Ghosh , Parthav Jailwalia , Xujing Wang The Dynamic Range of Gene Expressions Depend on Their Ontology. [Citation Graph (0, 0)][DBLP ] Conf ] Hui Fang , ChengXiang Zhai , Lei Liu , Jiong Yang Subspace Clustering for Microarray Data Analysis: Multiple Criteria and Significance Assessment. [Citation Graph (0, 0)][DBLP ] Conf ] John A. Berger , Sampsa Hautaniemi , Sanjit K. Mitra Comparative Analysis of Gene Expression and DNA Copy Number Data for Pancreatic and Breast Cancers Using an Orthogonal Decomposition. [Citation Graph (0, 0)][DBLP ] Conf ] Geoffrey Yang , Ming-Hsiu Ho , Earl Hubbell High-Throughput Microarray-Based Genotyping. [Citation Graph (0, 0)][DBLP ] Conf ] Lawrence D'Antonio , Paramjeet Bagga Computational Methods for Predicting Intramolecular G-Quadruplexes in Nucleotide Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Xiequn Xu , W. Bradley Barbazuk , Yucheng Feng , Karel Schubert , Agnes P. Chan , Geo Pertea , Li Zheng , Foo Cheung , Yuandan Lee Gene Recovery of Two Genome-Filtration Sequencing Techniques When Applied to the Maize Genome. [Citation Graph (0, 0)][DBLP ] Conf ] Zoé Lacroix , Kaushal Parekh , Louiqa Raschid , Maria-Esther Vidal Navigating through the Biological Maze. [Citation Graph (0, 0)][DBLP ] Conf ] Zoé Lacroix , Vidyadhari Edupuganti How Biological Source Capabilities May Affect the Data Collection Process. [Citation Graph (0, 0)][DBLP ] Conf ] Stephan Heymann , Felix Naumann , Louiqa Raschid , Peter Rieger Labeling and Enhancing Life Sciences Links. [Citation Graph (0, 0)][DBLP ] Conf ] Alireza Darvish , EunSang Bak , Kayvan Gopalakrishnan , R. H. Zadeh , Kayvan Najarian A New Hierarchical Method for Identification of Dynamic Regulatory Pathways from Time-Series DNA Microarray Data. [Citation Graph (0, 0)][DBLP ] Conf ] Pei Wang , Young Kim , Jonathan Pollack , Robert Tibshirani Boosted PRIM with Application to Searching for Oncogenic Pathway of Lung Cancer. [Citation Graph (0, 0)][DBLP ] Conf ] Fang-Xiang Wu , Anthony J. Kusalik , Wen-Jun Zhang A. Genetic Algorithm for Inferring Time Delays in Gene Regulatory Networks. [Citation Graph (0, 0)][DBLP ] Conf ] Peng Wang , Zhengchang Su , PhuongAn Dam , Ying Xu A Knowledge Base for Computational Pathway Reconstruction. [Citation Graph (0, 0)][DBLP ] Conf ] PhuongAn Dam , Zhengchang Su , Victor Olman , Ying Xu In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102. [Citation Graph (0, 0)][DBLP ] Conf ] Stephen A. Racunas , Christopher Griffin , Nigam Shah A Finite Model Theory for Biological Hypotheses. [Citation Graph (0, 0)][DBLP ] Conf ] Hee Young Kang , Hak Yong Kim Functional Modules from Protein Networks of Kinome and Cell Cycle in Saccharomyces Cerevisiae. [Citation Graph (0, 0)][DBLP ] Conf ] Olusola C. Idowu , Steven J. Lynden , Malcolm P. Young , Péter András Bacillus Subtilis Protein Interaction Network Analysis. [Citation Graph (0, 0)][DBLP ] Conf ] Jean-Loup Faulon , Shawn Martin , Robert D. Carr Dynamical Robustness in Gene Regulatory Networks. [Citation Graph (0, 0)][DBLP ] Conf ] Catalin Barbacioru , Daniel J. Cowden , Joel H. Saltz An Algorithm for Reconstruction of Markov Blankets in Bayesian Networks of Gene Expression Datasets. [Citation Graph (0, 0)][DBLP ] Conf ] Jianbo Gao , Jesse S. A. Bridgewater , Vwani P. Roychowdhury Synchronized Oscillations and Chaos in Coupled Genetic Repressilators. [Citation Graph (0, 0)][DBLP ] Conf ] Kohei Taki , Reiji Teramoto , Yoichi Takenaka , Hideo Matsuda Inference of Gene Regulatory Network Based on Module Network Model with Gene Functional Classifications. [Citation Graph (0, 0)][DBLP ] Conf ] Shoko Miyake , Yoichi Takenaka , Hideo Matsuda A Graph Analysis Method to Detect Metabolic Sub-Networks Based on Phylogenetic Profile. [Citation Graph (0, 0)][DBLP ] Conf ] Lie-Quan Lee , Jeff Varner , Kwok Ko Parallel Extreme Pathway Computation for Metabolic Networks. [Citation Graph (0, 0)][DBLP ] Conf ] Zhengchang Su , PhuongAn Dam , X. Chen , Victor Olman , Tao Jiang , Ying Xu Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. [Citation Graph (0, 0)][DBLP ] Conf ] Fenglou Mao , Zhengchang Su , Victor Olman , David Chuang , Ying Xu Pathway Mapping with Operon Information: An Integer-Programming Method. [Citation Graph (0, 0)][DBLP ] Conf ] Karen Sachs , Omar D. Perez , Dana Pe'er , Garry P. Nolan , David K. Gifford , Tommi Jaakkola , Douglas A. Lauffenburger Analysis of Signaling Pathways in Human T-Cells Using Bayesian Network Modeling of Single Cell Data. [Citation Graph (0, 0)][DBLP ] Conf ] Wei Wang , Gregory F. Cooper An Bayesian Method for Biological Pathway Discovery from High-Throughput Experimental Data. [Citation Graph (0, 0)][DBLP ] Conf ] Tie Wang , Jeffrey W. Touchman , Guoliang Xue Applying Two-Level Simulated Annealing on Bayesian Structure Learning to Infer Genetic Networks. [Citation Graph (0, 0)][DBLP ] Conf ] Hsiao Ping Lee , Tzu Fang Sheu , Yin-Te Tsai , Ching Hua Shih , Chuan Yi Tang A Efficient Algorithm for Unique Signature Discovery on Whole-Genome EST Databases. [Citation Graph (0, 0)][DBLP ] Conf ] Yan Ding , Hong Cao , Shu Wen VirusFinder: A Web-Based Virus Identification System Using Viral Nucleotide Signatures. [Citation Graph (0, 0)][DBLP ] Conf ] Jian Liu , Ming Li Finding Cancer Biomarkers from Mass Spectrometry Data by Decision Lists. [Citation Graph (0, 0)][DBLP ] Conf ] Hyunsoo Kim , Haesun Park Incremental and Decremental Least Squares Support Vector Machine and Its Application to Drug Design. [Citation Graph (0, 0)][DBLP ] Conf ] Eugene Lin , Dennis Chen , Yuchi Hwang , Ashely Chang , Z. John Gu A Prediction Model for the Drug Efficacy of Interferon in CHC Patients Based on SNPs. [Citation Graph (0, 0)][DBLP ] Conf ] Oriel Bergig , Danny Barash , Klara Kedem RNA Motif Search Using the Structure to String (STR2 ) Method. [Citation Graph (0, 0)][DBLP ] Conf ] Ravi Vijaya Satya , Amar Mukherjee PRUNER: Algorithms for Finding Monad Patterns in DNA Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Victor Olman , Jizhu Lu , PhuongAn Dam , Zhengchang Su , Ying Xu CUBIC: Search for Binding Sites. [Citation Graph (0, 0)][DBLP ] Conf ] Kevin Crosby , Paula Gabbert BioSPRINT: Classification of Intron and Exon Sequences Using the SPRINT Algorithm. [Citation Graph (0, 0)][DBLP ] Conf ] Xutao Deng , Hesham H. Ali A Hidden Markov Model for Gene Function Prediction from Sequential Expression Data. [Citation Graph (0, 0)][DBLP ] Conf ] Alexandre Tchourbanov , Hesham H. Ali , Jitender S. Deogun Using Enhancing Signals to Improve Specificity of ab initio Splice Site Sensors. [Citation Graph (0, 0)][DBLP ] Conf ] Xiaolu Huang , Hesham H. Ali , Anguraj Sadanandam , Rakesh Singh SRPVS: A New Motif Searching Algorithm for Protein Analysis. [Citation Graph (0, 0)][DBLP ] Conf ] Donald A. Adjeroh , Jianan Feng Locating All Tandem Repeat Families in a Sequence. [Citation Graph (0, 0)][DBLP ] Conf ] Youlian Pan , Brandon Smith , Hung Fang , A. Fazel Famili , Marianna Sikorska , P. Roy Walker Selection of Putative Cis-Regulatory Motifs through Regional and Global Conservation. [Citation Graph (0, 0)][DBLP ] Conf ] Yasuo Matsuyama , Ryo Kawamura Promoter Recognition for E. coli DNA Segments by Independent Component Analysis. [Citation Graph (0, 0)][DBLP ] Conf ] Krishna Gopalakrishnan , R. H. Zadeh , Kayvan Najarian , Alireza Darvish Computational Analysis and Classification of p53 Mutants According to Primary Structure. [Citation Graph (0, 0)][DBLP ] Conf ] Gong-Xin Yu , Byung-Hoon Park , Praveen Chandramohan , Al Geist , Nagiza F. Samatova In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate Specificity. [Citation Graph (0, 0)][DBLP ] Conf ] Chenyang Cui , Donghui Wang , Jiaoying Shi Comparing 3D Protein Structures Similarity by Using Fractal Features. [Citation Graph (0, 0)][DBLP ] Conf ] Peng Wang , Zhengchang Su , Jun-tao Guo , Ying Xu Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation. [Citation Graph (0, 0)][DBLP ] Conf ] Jaspreet Singh Sodhi , Liam J. McGuffin , Kevin Bryson , Jonathan J. Ward , Lorenz Wernisch , David T. Jones Automatic Prediction of Functional Site Regions in Low-Resolution Protein Structures. [Citation Graph (0, 0)][DBLP ] Conf ] Barrett Abel , Martin Gollery BPAP: A Computational Tool for Whole Genome Analysis and Annotation. [Citation Graph (0, 0)][DBLP ] Conf ] Todd J. Taylor , Iosif I. Vaisman A New Method of Secondary Structure Assignment Based on the Delaunay Tessellation of Protein Structures. [Citation Graph (0, 0)][DBLP ] Conf ] Jun-tao Guo , Ying Xu Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation Domain. [Citation Graph (0, 0)][DBLP ] Conf ] Sumeet Dua , Naveen Kandiraju A Novel Computational Framework for Structural Classification of Proteins Using Local Geometric Parameter Matching. [Citation Graph (0, 0)][DBLP ] Conf ] K. Arun , Christopher James Langmead Large-Scale Testing of Chemical Shift Prediction Algorithms and Improved Machine Learning-Based Approaches to Shift Prediction. [Citation Graph (0, 0)][DBLP ] Conf ] Chris H. Q. Ding , Richard F. Meraz , Xiaofeng He , Stephen R. Holbrook Contraction Graphs for Representation and Analysis of RNA Secondary Structure. [Citation Graph (0, 0)][DBLP ] Conf ] Christopher Maher , Marja Timmermans , Lincoln Stein , Doreen Ware Identifying MicroRNAs in Plant Genomes. [Citation Graph (0, 0)][DBLP ] Conf ] Assaf Avihoo , Nir Dromi , Danny Barash Fine-Grain Matrix Graph Representation for Predicting Mutations Leading to Conformational Rearrangements in Small RNAs. [Citation Graph (0, 0)][DBLP ] Conf ] Robert C. Edgar MUSCLE: Multiple Sequence Alignment with Improved Accuracy and Speed. [Citation Graph (0, 0)][DBLP ] Conf ] Greg Knowles , Paul Gardner-Stephen A New Hardware Architecture for Genomic and Proteomic Sequence Alignment. [Citation Graph (0, 0)][DBLP ] Conf ] Paul Gardner-Stephen , Greg Knowles DASH: Localising Dynamic Programming for Order of Magnitude Faster, Accurate Sequence Alignment. [Citation Graph (0, 0)][DBLP ] Conf ] Daniela Puiu SUPERCONTIGS: A Contig Scaffolding Tool. [Citation Graph (0, 0)][DBLP ] Conf ] Aaron E. Darling , Bob Mau , Mark Craven , Nicole T. Perna Multiple Alignment of Rearranged Genomes. [Citation Graph (0, 0)][DBLP ] Conf ] Maulik K. Shah , HoJoon Lee , Stephanie A. Rogers , Jeffrey W. Touchman An Exhaustive Genome Assembly Algorithm Using K-Mers to Indirectly Perform N-Squared Comparisons in O(N). [Citation Graph (0, 0)][DBLP ] Conf ] Shiori Furihata , Toshikazu Ito , Naoyuki Kamatani Association Tests and Estimation of Haplotype Frequencies and of Penetrance-Related Parameters in a Case-Control Study. [Citation Graph (0, 0)][DBLP ] Conf ] Ruiqi Wang , Junya Nakai , Mitsuyasu Seo , Luonan Chen Designing Synthetic Biological Systems by Multiple Time Scale Networks. [Citation Graph (0, 0)][DBLP ] Conf ] 