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Conferences in DBLP

Intelligent Systems in Molecular Biology (ismb)
2005 (conf/ismb/2005)

  1. H. V. Jagadish, David J. States, Burkhard Rost
    ISMB 2005. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:1-2 [Conf]
  2. H. V. Jagadish, David J. States, Burkhard Rost
    ISMB 2005 Organization. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:3-6 [Conf]
  3. Alberto Apostolico, Matteo Comin, Laxmi Parida
    Conservative extraction of over-represented extensible motifs. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:9-18 [Conf]
  4. Grégory Batt, Delphine Ropers, Hidde de Jong, Johannes Geiselmann, Radu Mateescu, Michel Page, Dominique Schneider
    Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:19-28 [Conf]
  5. Tim Beißbarth, Jason A. Tye-Din, Gordon K. Smyth, Terence P. Speed, Robert P. Anderson
    A systematic approach for comprehensive T-cell epitope discovery using peptide libraries. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:29-37 [Conf]
  6. Asa Ben-Hur, William Stafford Noble
    Kernel methods for predicting protein-protein interactions. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:38-46 [Conf]
  7. Karsten M. Borgwardt, Cheng Soon Ong, Stefan Schönauer, S. V. N. Vishwanathan, Alexander J. Smola, Hans-Peter Kriegel
    Protein function prediction via graph kernels. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:47-56 [Conf]
  8. Brona Brejová, Daniel G. Brown, Ming Li, Tomás Vinar
    ExonHunter: a comprehensive approach to gene finding. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:57-65 [Conf]
  9. T. J. Brunette, Oliver Brock
    Improving protein structure prediction with model-based search. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:66-74 [Conf]
  10. Jianlin Cheng, Pierre Baldi
    Three-stage prediction of protein ?-sheets by neural networks, alignments and graph algorithms. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:75-84 [Conf]
  11. Kei-Hoi Cheung, Kevin Y. Yip, Andrew Smith, Remko de Knikker, Andy Masiar, Mark Gerstein
    YeastHub: a semantic web use case for integrating data in the life sciences domain. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:85-96 [Conf]
  12. Benny Chor, Tamir Tuller
    Maximum likelihood of evolutionary trees: hardness and approximation. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:97-106 [Conf]
  13. Melissa S. Cline, John Blume, Simon Cawley, Tyson Clark, Jing-Shan Hu, Gang Lu, Nathan Salomonis, Hui Wang, Alan Williams
    ANOSVA: a statistical method for detecting splice variation from expression data. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:107-115 [Conf]
  14. Juan Cortés, Thierry Siméon, Vicente Ruiz de Angulo, David Guieysse, Magali Remaud-Siméon, Vinh Tran
    A path planning approach for computing large-amplitude motions of flexible molecules. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:116-125 [Conf]
  15. Matthew W. Dimmic, Melissa J. Hubisz, Carlos Bustamante, Rasmus Nielsen
    Detecting coevolving amino acid sites using Bayesian mutational mapping. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:126-135 [Conf]
  16. Mary E. Dolan, Li Ni, Evelyn Camon, Judith A. Blake
    A procedure for assessing GO annotation consistency. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:136-143 [Conf]
  17. Delbert Dueck, Quaid Morris, Brendan J. Frey
    Multi-way clustering of microarray data using probabilistic sparse matrix factorization. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:144-151 [Conf]
  18. Robert C. Edgar, Eugene W. Myers
    PILER: identification and classification of genomic repeats. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:152-158 [Conf]
  19. Jason Ernst, Gerard J. Nau, Ziv Bar-Joseph
    Clustering short time series gene expression data. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:159-168 [Conf]
  20. Humberto Miguel Garay-Malpartida, Jõao Marcelo Occhiucci, Juliano Alves, José Ernersto Belizário
    CaSPredictor: a new computer-based tool for caspase substrate prediction. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:169-176 [Conf]
  21. Peddinti V. Gopalacharyulu, Erno Lindfors, Catherine Bounsaythip, Teemu Kivioja, Laxman Yetukuri, Jaakko Hollmén, Matej Oresic
    Data integration and visualization system for enabling conceptual biology. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:177-185 [Conf]
  22. Yoonsoo Hahn, Byungkook Lee
    Identification of nine human-specific frameshift mutations by comparative analysis of the human and the chimpanzee genome sequences. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:186-194 [Conf]
  23. Eran Halperin, Gad Kimmel, Ron Shamir
    Tag SNP selection in genotype data for maximizing SNP prediction accuracy. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:195-203 [Conf]
  24. Sridhar Hannenhalli, Li-San Wang
    Enhanced position weight matrices using mixture models. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:204-212 [Conf]
  25. Haiyan Hu, Xifeng Yan, Yu Huang 0003, Jiawei Han, Xianghong Jasmine Zhou
    Mining coherent dense subgraphs across massive biological networks for functional discovery. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:213-221 [Conf]
  26. Jim C. Huang, Quaid Morris, Timothy R. Hughes, Brendan J. Frey
    GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:222-231 [Conf]
  27. Henrik Jönsson, Marcus Heisler, G. Venugopala Reddy, Vikas Agrawal, Victoria Gor, Bruce E. Shapiro, Eric Mjolsness, Elliot M. Meyerowitz
    Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:232-240 [Conf]
  28. Raja Jothi, Maricel G. Kann, Teresa M. Przytycka
    Predicting protein-protein interaction by searching evolutionary tree automorphism space. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:241-250 [Conf]
  29. Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer
    An HMM posterior decoder for sequence feature prediction that includes homology information. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:251-257 [Conf]
  30. Jaeju Ko, Leonel F. Murga, Ying Wei, Mary Jo Ondrechen
    Prediction of active sites for protein structures from computed chemical properties. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:258-265 [Conf]
  31. Zhenzhen Kou, William W. Cohen, Robert F. Murphy
    High-recall protein entity recognition using a dictionary. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:266-273 [Conf]
  32. Wei Li, Clifford A. Meyer, X. Shirley Liu
    A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:274-282 [Conf]
  33. Shaun Mahony, Aaron Golden, Terry J. Smith, Panayiotis V. Benos
    Improved detection of DNA motifs using a self-organized clustering of familial binding profiles. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:283-291 [Conf]
  34. Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald
    High-throughput inference of protein-protein interfaces from unassigned NMR data. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:292-301 [Conf]
  35. Elena Nabieva, Kam Jim, Amit Agarwal, Bernard Chazelle, Mona Singh
    Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:302-310 [Conf]
  36. Niranjan Nagarajan, Neil Jones, Uri Keich
    Computing the P-value of the information content from an alignment of multiple sequences. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:311-318 [Conf]
  37. Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker
    Beyond the clause: extraction of phosphorylation information from medline abstracts. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:319-327 [Conf]
  38. Guy Nimrod, Fabian Glaser, David Steinberg, Nir Ben-Tal, Tal Pupko
    In silico identification of functional regions in proteins. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:328-337 [Conf]
  39. William Stafford Noble, Scott Kuehn, Robert Thurman, Man Yu, John A. Stamatoyannopoulos
    Predicting the in vivo signature of human gene regulatory sequence. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:328-343 [Conf]
  40. Amol Prakash, Martin Tompa
    Statistics of local multiple alignments. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:344-350 [Conf]
  41. Alkes L. Price, Neil C. Jones, Pavel A. Pevzner
    De novo identification of repeat families in large genomes. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:351-358 [Conf]
  42. Sanjay Joshua Swamidass, Jonathan H. Chen, Jocelyne Bruand, Peter Phung, Liva Ralaivola, Pierre Baldi
    Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:359-368 [Conf]
  43. Gunnar Rätsch, Sören Sonnenburg, Bernhard Schölkopf
    RASE: recognition of alternatively spliced exons in C.elegans. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:369-377 [Conf]
  44. Tali Sadka, Michal Linial
    Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:378-386 [Conf]
  45. Roded Sharan, Eugene W. Myers
    A motif-based framework for recognizing sequence families. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:387-393 [Conf]
  46. Alena Shmygelska
    Search for folding nuclei in native protein structures. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:394-402 [Conf]
  47. Andrew D. Smith, Pavel Sumazin, Debopriya Das, Michael Q. Zhang
    Mining ChIP-chip data for transcription factor and cofactor binding sites. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:403-412 [Conf]
  48. Yun S. Song, Yufeng Wu, Dan Gusfield
    Efficient computation of close lower and upper bounds on the minimum number of recombinations in biological sequence evolution. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:413-422 [Conf]
  49. Mat Soukup, Hyungjun Cho, Jae K. Lee
    Robust classification modeling on microarray data using misclassification penalized posterior. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:423-430 [Conf]
  50. Haixu Tang, Yehia Mechref, Milos V. Novotny
    Automated interpretation of MS/MS spectra of oligosaccharides. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:431-439 [Conf]
  51. Kannan Tharakaraman, Leonardo Mariño-Ramírez, Sergey Sheetlin, David Landsman, John L. Spouge
    Alignments anchored on genomic landmarks can aid in the identification of regulatory elements. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:440-448 [Conf]
  52. Henry F. Winstanley, Sanne Abeln, Charlotte M. Deane
    How old is your fold? [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:449-458 [Conf]
  53. Yong Woo, Winfried Krueger, Anupinder Kaur, Gary A. Churchill
    Experimental design for three-color and four-color gene expression microarrays. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:459-467 [Conf]
  54. Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa
    Supervised enzyme network inference from the integration of genomic data and chemical information. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:468-477 [Conf]
  55. Yuzhen Ye, Andrei Osterman, Ross A. Overbeek, Adam Godzik
    Automatic detection of subsystem/pathway variants in genome analysis. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:478-486 [Conf]
  56. Jiangsheng Yu, Xue-wen Chen
    Bayesian neural network approaches to ovarian cancer identification from high-resolution mass spectrometry data. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:487-494 [Conf]
  57. Chenggang Yu, Nela Zavaljevski, Fred J. Stevens, Kelly Yackovich, Jaques Reifman
    Classifying noisy protein sequence data: a case study of immunoglobulin light chains. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:495-501 [Conf]
  58. Chunfang Zheng, Aleksander Lenert, David Sankoff
    Reversal distance for partially ordered genomes. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:502-508 [Conf]
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