Conferences in DBLP
Philip E. Bourne , Søren Brunak ISMB 2006. [Citation Graph (0, 0)][DBLP ] Conf ] ISMB 2006 Organization. [Citation Graph (0, 0)][DBLP ] Conf ] Andrey Alexeyenko , Ivica Tamas , Gang Liu , Erik L. L. Sonnhammer Automatic clustering of orthologs and inparalogs shared by multiple proteomes. [Citation Graph (0, 0)][DBLP ] Conf ] Iris Antes , Shirley W. I. Siu , Thomas Lengauer DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations. [Citation Graph (0, 0)][DBLP ] Conf ] Kiyoko F. Aoki-Kinoshita , Nobuhisa Ueda , Hiroshi Mamitsuka , Minoru Kanehisa ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains. [Citation Graph (0, 0)][DBLP ] Conf ] Fabrice Armougom , Sébastien Moretti , Vladimir Keduas , Cédric Notredame The iRMSD: a local measure of sequence alignment accuracy using structural information. [Citation Graph (0, 0)][DBLP ] Conf ] Sitaram Asur , Pichai Raman , Matthew Eric Otey , Srinivasan Parthasarathy A model-based approach for mining membrane protein crystallization trials. [Citation Graph (0, 0)][DBLP ] Conf ] Karsten M. Borgwardt , Arthur Gretton , Malte J. Rasch , Hans-Peter Kriegel , Bernhard Schölkopf , Alexander J. Smola Integrating structured biological data by Kernel Maximum Mean Discrepancy. [Citation Graph (0, 0)][DBLP ] Conf ] Giovanni Bottegoni , Walter Rocchia , Maurizio Recanatini , Andrea Cavalli AClAP, Autonomous hierarchical agglomerative Cluster Analysis based protocol to partition conformational datasets. [Citation Graph (0, 0)][DBLP ] Conf ] Patryk Burek , Robert Hoehndorf , Frank Loebe , Johann Visagie , Heinrich Herre , Janet Kelso A top-level ontology of functions and its application in the Open Biomedical Ontologies. [Citation Graph (0, 0)][DBLP ] Conf ] Bruno Contreras-Moreira , Julio Collado-Vides Comparative footprinting of DNA-binding proteins. [Citation Graph (0, 0)][DBLP ] Conf ] Frank DiMaio , Jude W. Shavlik , George N. Phillips A probabilistic approach to protein backbone tracing in electron density maps. [Citation Graph (0, 0)][DBLP ] Conf ] Chuong B. Do , Daniel A. Woods , Serafim Batzoglou CONTRAfold: RNA secondary structure prediction without physics-based models. [Citation Graph (0, 0)][DBLP ] Conf ] Timothy M. D. Ebbels , Bernard F. Buxton , David T. Jones springScape : visualisation of microarray and contextual bioinformatic data using spring embedding and an "information landscape".Citation Graph (0, 0)][DBLP ] Conf ] Logan Everett , Li-San Wang , Sridhar Hannenhalli Dense subgraph computation via stochastic search: application to detect transcriptional modules. [Citation Graph (0, 0)][DBLP ] Conf ] Elena Edelman , Alessandro Porrello , Justin Guinney , Bala Balakumaran , Andrea Bild , Phillip G. Febbo , Sayan Mukherjee Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles. [Citation Graph (0, 0)][DBLP ] Conf ] Adrien Fauré , Aurélien Naldi , Claudine Chaouiya , Denis Thieffry Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle. [Citation Graph (0, 0)][DBLP ] Conf ] Bernd Fischer , Jonas Grossmann , Volker Roth , Wilhelm Gruissem , Sacha Baginsky , Joachim M. Buhmann Semi-supervised LC/MS alignment for differential proteomics. [Citation Graph (0, 0)][DBLP ] Conf ] Barrett C. Foat , Alexandre V. Morozov , Harmen J. Bussemaker Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. [Citation Graph (0, 0)][DBLP ] Conf ] Eugene Fratkin , Brian T. Naughton , Douglas L. Brutlag , Serafim Batzoglou MotifCut: regulatory motifs finding with maximum density subgraphs. [Citation Graph (0, 0)][DBLP ] Conf ] Hendrik Fuß , Werner Dubitzky , C. Stephen Downes , Mary Jo Kurth Bistable switching and excitable behaviour in the activation of Src at mitosis. [Citation Graph (0, 0)][DBLP ] Conf ] Benjamin Georgi , Alexander Schliep Context-specific independence mixture modeling for positional weight matrices. [Citation Graph (0, 0)][DBLP ] Conf ] Ivelin Georgiev , Ryan H. Lilien , Bruce Randall Donald Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. [Citation Graph (0, 0)][DBLP ] Conf ] Olivier Gevaert , Frank De Smet , Dirk Timmerman , Yves Moreau , Bart De Moor Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks. [Citation Graph (0, 0)][DBLP ] Conf ] Erik Granseth , Håkan Viklund , Arne Elofsson ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins. [Citation Graph (0, 0)][DBLP ] Conf ] Jana Hertel , Peter F. Stadler Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data. [Citation Graph (0, 0)][DBLP ] Conf ] Fabien P. E. Huard , Charlotte M. Deane , Graham R. Wood Modelling sequential protein folding under kinetic control. [Citation Graph (0, 0)][DBLP ] Conf ] Phil Hyoun Lee , Hagit Shatkay BNTagger: improved tagging SNP selection using Bayesian networks. [Citation Graph (0, 0)][DBLP ] Conf ] Nebojsa Jojic , Manuel Reyes-Gomez , David Heckerman , Carl Myers Kadie , Ora Schueler-Furman Learning MHC I - peptide binding. [Citation Graph (0, 0)][DBLP ] Conf ] Hyunchul Jang , Jaesoo Lim , Joon-Ho Lim , Soo-Jun Park , Kyu-Chul Lee , Seon-Hee Park Finding the evidence for protein-protein interactions from PubMed abstracts. [Citation Graph (0, 0)][DBLP ] Conf ] Neil C. Jones , Pavel A. Pevzner Comparative genomics reveals unusually long motifs in mammalian genomes. [Citation Graph (0, 0)][DBLP ] Conf ] Emre Karakoç , Artem Cherkasov , Süleyman Cenk Sahinalp Distance based algorithms for small biomolecule classification and structural similarity search. [Citation Graph (0, 0)][DBLP ] Conf ] Firas Khatib , Matthew T. Weirauch , Carol A. Rohl Rapid knot detection and application to protein structure prediction. [Citation Graph (0, 0)][DBLP ] Conf ] Mustafa Kirac , Gultekin Özsoyoglu , Jiong Yang Annotating proteins by mining protein interaction networks. [Citation Graph (0, 0)][DBLP ] Conf ] Geoffrey Koh , Huey Fern Carol Teong , Marie-Véronique Clément , David Hsu , P. S. Thiagarajan A decompositional approach to parameter estimation in pathway modeling: a case study of the Akt and MAPK pathways and their crosstalk. [Citation Graph (0, 0)][DBLP ] Conf ] Lutz Krause , Naryttza N. Diaz , Daniela Bartels , Robert A. Edwards , Alfred Pühler , Forest Rohwer , Folker Meyer , Jens Stoye Finding novel genes in bacterial communities isolated from the environment. [Citation Graph (0, 0)][DBLP ] Conf ] Gorka Lasso , John F. Antoniw , Jonathan G. L. Mullins A combinatorial pattern discovery approach for the prediction of membrane dipping (re-entrant) loops. [Citation Graph (0, 0)][DBLP ] Conf ] Tien-ho Lin , Eugene W. Myers , Eric P. Xing Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers. [Citation Graph (0, 0)][DBLP ] Conf ] Chunmei Liu , Bo Yan , Yinglei Song , Ying Xu , Liming Cai Peptide sequence tag-based blind identification of post-translational modifications with point process model. [Citation Graph (0, 0)][DBLP ] Conf ] Yong Lu , Ronald Rosenfeld , Ziv Bar-Joseph Identifying cycling genes by combining sequence homology and expression data. [Citation Graph (0, 0)][DBLP ] Conf ] Daniel L. Mace , Ji-Young Lee , Richard W. Twigg , Juliette Colinas , Philip N. Benfey , Uwe Ohler Quantification of transcription factor expression from Arabidopsis images. [Citation Graph (0, 0)][DBLP ] Conf ] Reuma Magori-Cohen , Yoram Louzoun , Steven H. Kleinstein Mutation parameters from DNA sequence data using graph theoretic measures on lineage trees. [Citation Graph (0, 0)][DBLP ] Conf ] Denise Y. F. Mak , Yevgeniy Gelfand , Gary Benson Indel seeds for homology search. [Citation Graph (0, 0)][DBLP ] Conf ] Tobias P. Mann , William Stafford Noble Efficient identification of DNA hybridization partners in a sequence database. [Citation Graph (0, 0)][DBLP ] Conf ] Victor M. Markowitz , Natalia Ivanova , Krishna Palaniappan , Ernest Szeto , Frank Korzeniewski , Athanasios Lykidis , Iain Anderson , Konstantinos Mavrommatis , Victor Kunin , Hector Garcia Martin , Inna Dubchak , Philip Hugenholtz , Nikos Kyrpides An experimental metagenome data management and analysis system. [Citation Graph (0, 0)][DBLP ] Conf ] Joe Mellor , Charles DeLisi An equilibrium partitioning model connecting gene expression and cis -motif content. [Citation Graph (0, 0)][DBLP ] Conf ] Jose C. Nacher , Jean-Marc Schwartz , Minoru Kanehisa , Tatsuya Akutsu Identification of metabolic units induced by environmental signals. [Citation Graph (0, 0)][DBLP ] Conf ] Leelavati Narlikar , Raluca Gordân , Uwe Ohler , Alexander J. Hartemink Informative priors based on transcription factor structural class improve de novo motif discovery. [Citation Graph (0, 0)][DBLP ] Conf ] Patrick Ng , Niranjan Nagarajan , Neil Jones , Uri Keich Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone. [Citation Graph (0, 0)][DBLP ] Conf ] Yanay Ofran , Guy Yachdav , Eyal Mozes , Ta-tsen Soong , Rajesh Nair , Burkhard Rost Create and assess protein networks through molecular characteristics of individual proteins. [Citation Graph (0, 0)][DBLP ] Conf ] Andrea Pierleoni , Pier Luigi Martelli , Piero Fariselli , Rita Casadio BaCelLo: a balanced subcellular localization predictor. [Citation Graph (0, 0)][DBLP ] Conf ] Yuan Qi , Patrycja E. Missiuro , Ashish Kapoor , Craig P. Hunter , Tommi Jaakkola , David K. Gifford , Hui Ge Semi-supervised analysis of gene expression profiles for lineage-specific development in the Caenorhabditis elegans embryo. [Citation Graph (0, 0)][DBLP ] Conf ] Alexander Schliep , Sven Rahmann Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree. [Citation Graph (0, 0)][DBLP ] Conf ] Sohrab P. Shah , Xiang Xuan , Ronald J. deLeeuw , Mehrnoush Khojasteh , Wan L. Lam , Raymond Ng , Kevin P. Murphy Integrating copy number polymorphisms into array CGH analysis using a robust HMM. [Citation Graph (0, 0)][DBLP ] Conf ] Boris E. Shakhnovich Relative contributions of structural designability and functional diversity in molecular evolution of duplicates. [Citation Graph (0, 0)][DBLP ] Conf ] Hagit Shatkay , Nawei Chen , Dorothea Blostein Integrating image data into biomedical text categorization. [Citation Graph (0, 0)][DBLP ] Conf ] Saurabh Sinha On counting position weight matrix matches in a sequence, with application to discriminative motif finding. [Citation Graph (0, 0)][DBLP ] Conf ] Larisa N. Soldatova , Amanda Clare , Andrew Sparkes , Ross D. King An ontology for a Robot Scientist. [Citation Graph (0, 0)][DBLP ] Conf ] Sören Sonnenburg , Alexander Zien , Gunnar Rätsch ARTS: accurate recognition of transcription starts in human. [Citation Graph (0, 0)][DBLP ] Conf ] Haixu Tang , Randy J. Arnold , Pedro Alves , Zhiyin Xun , David E. Clemmer , Milos V. Novotny , James P. Reilly , Predrag Radivojac A computational approach toward label-free protein quantification using predicted peptide detectability. [Citation Graph (0, 0)][DBLP ] Conf ] Zhidong Tu , Li Wang , Michelle N. Arbeitman , Ting Chen , Fengzhu Sun An integrative approach for causal gene identification and gene regulatory pathway inference. [Citation Graph (0, 0)][DBLP ] Conf ] Vinay Varadan , David M. Miller III , Dimitris Anastassiou Computational inference of the molecular logic for synaptic connectivity in C. elegans . [Citation Graph (0, 0)][DBLP ] Conf ] Roy Varshavsky , Assaf Gottlieb , Michal Linial , David Horn Novel Unsupervised Feature Filtering of Biological Data. [Citation Graph (0, 0)][DBLP ] Conf ] Ravi Vijaya Satya , Amar Mukherjee , Gabriela Alexe , Laxmi Parida , Gyan Bhanot Constructing Near-Perfect Phylogenies with multiple homoplasy events. [Citation Graph (0, 0)][DBLP ] Conf ] Pinglang Wang , Manhong Dai , Weijian Xuan , Richard C. McEachin , Anne U. Jackson , Laura J. Scott , Brian Athey , Stanley J. Watson , Fan Meng SNP Function Portal: a web database for exploring the function implication of SNP alleles. [Citation Graph (0, 0)][DBLP ] Conf ] Katy Wolstencroft , Phillip W. Lord , Lydia Tabernero , Andy Brass , Robert Stevens Protein classification using ontology classification. [Citation Graph (0, 0)][DBLP ] Conf ] Nir Yosef , Alon Kaufman , Eytan Ruppin Inferring Functional Pathways from Multi-Perturbation Data. [Citation Graph (0, 0)][DBLP ] Conf ] Hong Yu , Minsuk Lee Accessing bioscience images from abstract sentences. [Citation Graph (0, 0)][DBLP ] Conf ] Shaojie Zhang , Ilya Borovok , Yair Aharonowitz , Roded Sharan , Vineet Bafna A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements. [Citation Graph (0, 0)][DBLP ] Conf ] 