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Journals in DBLP

Bioinformatics
2004, volume: 20, number: 18

  1. M. C. Accardo, E. Giordano, S. Riccardo, F. A. Digilio, Giovanni Iazzetti, Raffaele Calogero, M. Furia
    A computational search for box C/D snoRNA genes in the Drosophila melanogaster genome. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3293-3301 [Journal]
  2. André Catic, Cal T. Collins, George M. Church, Hidde L. Ploegh
    Preferred in vivo ubiquitination sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3302-3307 [Journal]
  3. Huaiqiu Zhu, Gang-Qing Hu, Zheng-Qing Ouyang, Jin Wang, Zhen-Su She
    Accuracy improvement for identifying translation initiation sites in microbial genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3308-3317 [Journal]
  4. Joanna H. Shih, Aleksandra M. Michalowska, Kevin Dobbin, Yumei Ye, Ting Hu Qiu, Jeffrey E. Green
    Effects of pooling mRNA in microarray class comparisons. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3318-3325 [Journal]
  5. Marco Masseroli, Andrea Stella, Natalia Meani, Myriam Alcalay, Francesco Pinciroli
    MyWEST: My Web Extraction Software Tool for effective mining of annotations from web-based databanks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3326-3335 [Journal]
  6. Yong Wang, Frederick C. C. Leung
    DNA structure constraint is probably a fundamental factor inducing CpG deficiency in bacteria. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3336-3345 [Journal]
  7. István Albert, Réka Albert
    Conserved network motifs allow protein-protein interaction prediction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3346-3352 [Journal]
  8. Raji Balasubramanian, Thomas LaFramboise, Denise Scholtens, Robert Gentleman
    A graph-theoretic approach to testing associations between disparate sources of functional genomics data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3353-3362 [Journal]
  9. Michael Roberts, Wayne Hayes, Brian R. Hunt, Stephen M. Mount, James A. Yorke
    Reducing storage requirements for biological sequence comparison. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3363-3369 [Journal]
  10. Daniel McDonald, Hsinchun Chen, Hua Su, Byron Marshall
    Extracting gene pathway relations using a hybrid grammar: the Arizona Relation Parser. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3370-3378 [Journal]
  11. Mehmet Bilgen, Mehmet Karaca, A. Naci Onus, Ayse Gül Ince
    A software program combining sequence motif searches with keywords for finding repeats containing DNA sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3379-3386 [Journal]
  12. Vitaly A. Selivanov, Joaquim Puigjaner, Antonio Sillero, Josep J. Centelles, Antonio Ramos-Montoya, Paul W.-N. Lee, Marta Cascante
    An optimized algorithm for flux estimation from isotopomer distribution in glucose metabolites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3387-3397 [Journal]
  13. Zheng Rong Yang, Andrew R. Dalby, Jing Qiu
    Mining HIV protease cleavage data using genetic programming with a sum-product function. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3398-3405 [Journal]
  14. Lexin Li, Hongzhe Li
    Dimension reduction methods for microarrays with application to censored survival data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3406-3412 [Journal]
  15. Philippe Hupé, Nicolas Stransky, Jean-Paul Thiery, François Radvanyi, Emmanuel Barillot
    Analysis of array CGH data: from signal ratio to gain and loss of DNA regions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3413-3422 [Journal]
  16. Kyounghwa Bae, Bani K. Mallick
    Gene selection using a two-level hierarchical Bayesian model. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3423-3430 [Journal]
  17. Peter M. Haverty, Li-Li Hsiao, Steven R. Gullans, Ulla Hansen, Zhiping Weng
    Limited agreement among three global gene expression methods highlights the requirement for non-global validation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3431-3441 [Journal]
  18. Elizabeth Shoop, Paulo Casaes, Getiria Onsongo, Lisa Lesnett, Erla Osk Petursdottir, Edward Kofi Yeboah Donkor, Dennis Tkach, Michael Cosimini
    Data exploration tools for the Gene Ontology database. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3442-3454 [Journal]
  19. Tuan D. Pham, Johannes Zuegg
    A probabilistic measure for alignment-free sequence comparison. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3455-3461 [Journal]
  20. Jeffrey A. Rosenfeld, Indra Neil Sarkar, Paul J. Planet, David H. Figurski, Robert DeSalle
    ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3462-3465 [Journal]
  21. Joyce Phui Yee Siew, Asif M. Khan, Paul T. J. Tan, Judice L. Y. Koh, Seng Hong Seah, Chuay Yeng Koo, Siaw Ching Chai, Arunmozhiarasi Armugam, Vladimir Brusic, Kandiah Jeyaseelan
    Systematic analysis of snake neurotoxins' functional classification using a data warehousing approach. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3466-3480 [Journal]
  22. Diane J. Rodi, Suneeta Mandava, Lee Makowski
    DIVAA: analysis of amino acid diversity in multiple aligned protein sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3481-3489 [Journal]
  23. Kodangattil R. Sreekumar, You-Ping Huang, Mark H. Pausch, Kamalakar Gulukota
    Predicting GPCR-G-protein coupling using hidden Markov models. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3490-3499 [Journal]
  24. Soojin Lee, Min-Kyu Cho, Jin-Won Jung, Jai-Hoon Kim, Weontae Lee
    Exploring protein fold space by secondary structure prediction using data distribution method on Grid platform. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3500-3507 [Journal]
  25. Natasa Przulj, Derek G. Corneil, Igor Jurisica
    Modeling interactome: scale-free or geometric?. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3508-3515 [Journal]
  26. Robert Osada, Elena Zaslavsky, Mona Singh
    Comparative analysis of methods for representing and searching for transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3516-3525 [Journal]
  27. Anton Yuryev, Jianping Huang, Kathryn E. Scott, Jennifer Kuebler, Miriam Donaldson, Michael S. Phillips 0002, Mark Pohl, Michael T. Boyce-Jacino
    Primer Design and Marker Clustering for Multiplex SNP-IT Primer Extension Genotyping Assay using Statistical Modeling. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3526-3532 [Journal]
  28. Chad L. Myers, Maitreya J. Dunham, Sun-Yuan Kung, Olga G. Troyanskaya
    Accurate detection of aneuploidies in array CGH and gene expression microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3533-3543 [Journal]
  29. Roland Linder, Dawn Dew, Holger Sudhoff, Dirk Theegarten, Klaus Remberger, Siegfried J. Pöppl, Mathias Wagner II
    The 'subsequent artificial neural network' (SANN) approach might bring more classificatory power to ANN-based DNA microarray analyses. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3544-3552 [Journal]
  30. Markus Neuháuser II, Roswitha Senske
    The Baumgartner-Wei?-Schindler test for the detection of differentially expressed genes in replicated microarray experiments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3553-3564 [Journal]
  31. Alberto de la Fuente, Nan Bing, Ina Hoeschele, Pedro Mendes
    Discovery of meaningful associations in genomic data using partial correlation coefficients. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3565-3574 [Journal]
  32. Markus Anderle II, Sushmita Roy, Hua Lin, Christopher Becker, Keith Joho
    Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3575-3582 [Journal]
  33. Marcel Dettling
    BagBoosting for tumor classification with gene expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3583-3593 [Journal]
  34. Jing Yu, V. Anne Smith, Paul P. Wang, Alexander J. Hartemink, Erich D. Jarvis
    Advances to Bayesian network inference for generating causal networks from observational biological data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3594-3603 [Journal]
  35. Minlie Huang, Xiaoyan Zhu, Hao Yu, Donald G. Payan, Kunbin Qu, Ming Li
    Discovering patterns to extract protein-protein interactions from full texts. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3604-3612 [Journal]
  36. Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh
    Training HMM structure with genetic algorithm for biological sequence analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3613-3619 [Journal]
  37. Matthias Koenig, Niels Grabe
    Highly specific prediction of phosphorylation sites in proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3620-3627 [Journal]
  38. Jim Samuelsson, Daniel Dalevi, Fredrik Levander, Thorsteinn S. Rögnvaldsson
    Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3628-3635 [Journal]
  39. Kees Jong, Elena Marchiori, Gerrit Meijer, Aad van der Vaart, Bauke Ylstra
    Breakpoint identification and smoothing of array comparative genomic hybridization data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3636-3637 [Journal]
  40. O. J. Shaw, Colin Harwood, L. Jason Steggles, Anil Wipat
    SARGE: a tool for creation of putative genetic networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3638-3640 [Journal]
  41. Steffen Durinck, Joke Allemeersch, Vincent Carey, Yves Moreau, Bart De Moor
    Importing MAGE-ML format microarray data into BioConductor. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3641-3642 [Journal]
  42. Brian J. Haas, Arthur L. Delcher, Jennifer R. Wortman, Steven Salzberg
    DAGchainer: a tool for mining segmental genome duplications and synteny. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3643-3646 [Journal]
  43. Dirk Steinhauser, Björn Usadel, Alexander Lüdemann, Oliver Thimm, Joachim Kopka
    CSB.DB: a comprehensive systems-biology database. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3647-3651 [Journal]
  44. Paolo Di Giovine
    PLPMDB: Pyridoxal-5'-phosphate dependent enzymes mutants database. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3652-3653 [Journal]
  45. Kristoffer Forslund, Daniel H. Huson, Vincent Moulton
    VisRD--visual recombination detection. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3654-3655 [Journal]
  46. Juan M. Vaquerizas, Joaquín Dopazo, Ramón Díaz-Uriarte
    DNMAD: web-based diagnosis and normalization for microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3656-3658 [Journal]
  47. Simon M. Lin, Patrick McConnell, Kimberly F. Johnson, Jennifer Shoemaker
    MedlineR: an open source library in R for Medline literature data mining. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3659-3661 [Journal]
  48. Aaron Kaluszka, Cynthia Gibas
    Interactive gene-order comparison for multiple small genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3662-3664 [Journal]
  49. Christophe Hitte, Thomas Derrien, Catherine André, Elaine A. Ostrander, Francis Galibert
    CRH_Server: an online comparative and radiation hybrid mapping server for the canine genome. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3665-3667 [Journal]
  50. Shaolin Liu, Nicholas A. Tinker, Stephen J. Molnar, Diane E. Mather
    EC_oligos: automated and whole-genome primer design for exons within one or between two genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3668-3669 [Journal]
  51. Giacomo Finocchiaro, Paola Parise, Simone P. Minardi, Myriam Alcalay, Heiko Mueller
    GenePicker: replicate analysis of Affymetrix gene expression microarrays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3670-3672 [Journal]
  52. Chris C. A. Spencer, Graham Coop
    SelSim: a program to simulate population genetic data with natural selection and recombination. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3673-3675 [Journal]
  53. Andreas Gisel, Maria Panetta, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Cecilia Saccone, Graziano Pesole
    DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3676-3679 [Journal]
  54. Marc Vass, Nicholas Allen, Clifford A. Shaffer, Naren Ramakrishnan, Layne T. Watson, John J. Tyson
    The JigCell Model Builder and Run Manager. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3680-3681 [Journal]
  55. Peter F. Hallin, David Ussery
    CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3682-3686 [Journal]
  56. Nicholas Knowlton, Igor Dozmorov, Michael Centola
    Microarray Data Analysis Toolbox (MDAT): for normalization, adjustment and analysis of gene expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3687-3690 [Journal]
  57. Chia-Chin Wu, Hsuan-Cheng Huang, Hsueh-Fen Juan, Shui-Tein Chen
    GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3691-3693 [Journal]
  58. Vincent Catherinot, Gilles Labesse
    ViTO: tool for refinement of protein sequence-structure alignments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3694-3696 [Journal]
  59. Yuan Qi, Nick V. Grishin
    PCOAT: positional correlation analysis using multiple methods. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3697-3699 [Journal]
  60. Peter E. Midford
    Ontologies for Behavior. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3700-3701 [Journal]
  61. Tancred Frickey, Andrei N. Lupas
    CLANS: a Java application for visualizing protein families based on pairwise similarity. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3702-3704 [Journal]
  62. James M. Wettenhall, Gordon K. Smyth
    limmaGUI: A graphical user interface for linear modeling of microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3705-3706 [Journal]
  63. Jean-Luc Pons, Therese E. Malliavin, Dominique Tramesel, Marc-André Delsuc
    NMRb: a web-site repository for raw NMR datasets. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3707-3709 [Journal]
  64. Elizabeth I. Boyle, Shuai Weng, Jeremy Gollub, Heng Jin, David Botstein, J. Michael Cherry, Gavin Sherlock
    GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3710-3715 [Journal]
  65. Weijia Xu, Daniel P. Miranker
    A metric model of amino acid substitution. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:18, pp:3716-3716 [Journal]
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