Journals in DBLP
Naum I. Gershenzon , Ilya P. Ioshikhes Synergy of human Pol II core promoter elements revealed by statistical sequence analysis. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1295-1300 [Journal ] Alex Bateman , Matthew T. G. Holden , Corin Yeats The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1301-1303 [Journal ] Francesca Ciccarelli , Peer Bork The WHy domain mediates the response to desiccation in plants and bacteria. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1304-1307 [Journal ] S. Sri Krishna , Nick V. Grishin Structural drift: a possible path to protein fold change. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1308-1310 [Journal ] Antonio del Sol , Hirotomo Fujihashi , Paul O'Meara Topology of small-world networks of protein?Cprotein complex structures. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1311-1315 [Journal ] Tomoyuki Yamada , Shinichi Morishita Accelerated off-target search algorithm for siRNA. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1316-1324 [Journal ] Melissa D. Krebs , Robert D. Tingley , Julie E. Zeskind , Joung-Mo Kang , Maria E. Holmboe , Cristina E. Davis Autoregressive modeling of analytical sensor data can yield classifiers in the predictor coefficient parameter space. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1325-1331 [Journal ] Sven Degroeve , Yvan Saeys , Bernard De Baets , Pierre Rouzé , Yves Van de Peer SpliceMachine: predicting splice sites from high-dimensional local context representations. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1332-1338 [Journal ] Steven E. Hampson , B. S. Gaut , Pierre Baldi Statistical detection of chromosomal homology using shared-gene density alone. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1339-1348 [Journal ] John R. Rose , William H. Turkett , Iulia C. Oroian , William W. Laegreid , John W. Keele Correlation of amino acid preference and mammalian viral genome type. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1349-1357 [Journal ] Yun Lian , Harold R. Garner Evidence for the regulation of alternative splicing via complementary DNA sequence repeats. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1358-1364 [Journal ] Eric K. Nordberg YODA: selecting signature oligonucleotides. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1365-1370 [Journal ] Ketil Malde , Eivind Coward , Inge Jonassen A graph based algorithm for generating EST consensus sequences. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1371-1375 [Journal ] Javier Santoyo , Juan M. Vaquerizas , Joaquín Dopazo Highly specific and accurate selection of siRNAs for high-throughput functional assays. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1376-1382 [Journal ] Caroline C. Friedel , Katharina H. V. Jahn , Selina Sommer , Stephen Rudd , Hans-Werner Mewes , Igor V. Tetko Support vector machines for separation of mixed plant?Cpathogen EST collections based on codon usage. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1383-1388 [Journal ] Matthias B. Wahl , Ulrich Heinzmann , Kenji Imai LongSAGE analysis revealed the presence of a large number of novel antisense genes in the mouse genome. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1389-1392 [Journal ] Matthias B. Wahl , Ulrich Heinzmann , Kenji Imai LongSAGE analysis significantly improves genome annotation: identifications of novel genes and alternative transcripts in the mouse. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1393-1400 [Journal ] Xiaochen Bo , Shengqi Wang TargetFinder: a software for antisense oligonucleotide target site selection based on MAST and secondary structures of target mRNA. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1401-1402 [Journal ] E. Jacob , Roschen Sasikumar , K. N. R. Nair A fuzzy guided genetic algorithm for operon prediction. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1403-1407 [Journal ] Iain M. Wallace , Orla O'Sullivan , Desmond G. Higgins Evaluation of iterative alignment algorithms for multiple alignment. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1408-1414 [Journal ] East Zhao , Hsuan-Liang Liu , Chi-Hung Tsai , Huai-Kuang Tsai , Chen-hsiung Chan , Cheng-Yan Kao Cysteine separations profiles on protein sequences infer disulfide connectivity. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1415-1420 [Journal ] Yasuyuki Nozaki , Matthew I. Bellgard Statistical evaluation and comparison of a pairwise alignment algorithm that a priori assigns the number of gaps rather than employing gap penalties. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1421-1428 [Journal ] Volkan Atalay , Rengül Çetin-Atalay Implicit motif distribution based hybrid computational kernel for sequence classification. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1429-1436 [Journal ] Veronique Prigent , Jean-Claude Thierry , Olivier Poch , Frédéric Plewniak DbW: automatic update of a functional family-specific multiple alignment. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1437-1442 [Journal ] Antonio Cavallo , Andrew C. R. Martin Mapping SNPs to protein sequence and structure data. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1443-1450 [Journal ] Maricel G. Kann , Paul A. Thiessen , Anna R. Panchenko , Alejandro A. Schäffer , Stephen F. Altschul , Stephen H. Bryant A structure-based method for protein sequence alignment. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1451-1456 [Journal ] Kiyoko F. Aoki , Hiroshi Mamitsuka , Tatsuya Akutsu , Minoru Kanehisa A score matrix to reveal the hidden links in glycans. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1457-1463 [Journal ] Julian Gough Convergent evolution of domain architectures (is rare). [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1464-1471 [Journal ] Brian Pierce , Weiwei Tong , Zhiping Weng M-ZDOCK: a grid-based approach for Cn symmetric multimer docking. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1472-1478 [Journal ] Hyun S. Moon , Jonghwa Bhak , Kwang Hyung Lee , Doheon Lee Architecture of basic building blocks in protein and domain structural interaction networks. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1479-1486 [Journal ] James R. Bradford , David R. Westhead Improved prediction of protein-Cprotein binding sites using a support vector machines approach. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1487-1494 [Journal ] Ugis Sarkans , Helen E. Parkinson , Gonzalo Garcia Lara , Ahmet Oezcimen , Anjan Sharma , Niran Abeygunawardena , Sergio Contrino , Ele Holloway , Philippe Rocca-Serra , Gaurab Mukherjee , Mohammadreza Shojatalab , Misha Kapushesky , Susanna-Assunta Sansone , Anna Farne , Tim Rayner , Alvis Brazma The ArrayExpress gene expression database: a software engineering and implementation perspective. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1495-1501 [Journal ] Chen-An Tsai , Sue-Jane Wang , Dung-Tsa Chen , James J. Chen Sample size for gene expression microarray experiments. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1502-1508 [Journal ] Jianping Hua , Zixiang Xiong , James Lowey , Edward Suh , Edward R. Dougherty Optimal number of features as a function of sample size for various classification rules. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1509-1515 [Journal ] Rongwei Fu , Dipak K. Dey , Kent E. Holsinger Bayesian models for the analysis of genetic structure when populations are correlated. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1516-1529 [Journal ] Yuhang Wang , Fillia Makedon , James C. Ford , Justin D. Pearlman HykGene: a hybrid approach for selecting marker genes for phenotype classification using microarray gene expression data. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1530-1537 [Journal ] Qinghua Cui , Bing Liu , Tianzi Jiang , Songde Ma Characterizing the dynamic connectivity between genes by variable parameter regression and Kalman filtering based on temporal gene expression data. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1538-1541 [Journal ] Ranadip Pal , Aniruddha Datta , Albert J. Fornace , Michael L. Bittner , Edward R. Dougherty Boolean relationships among genes responsive to ionizing radiation in the NCI 60 ACDS. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1542-1549 [Journal ] Céline Lefebvre , Jean-Christophe Aude , Eric Glémet , Christian Néri Balancing protein similarity and gene co-expression reveals new links between genetic conservation and developmental diversity in invertebrates. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1550-1558 [Journal ] Xin Zhou , K. Z. Mao LS Bound based gene selection for DNA microarray data. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1559-1564 [Journal ] Baolin Wu Differential gene expression detection using penalized linear regression models: the improved SAM statistics. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1565-1571 [Journal ] Ursula Sauer , Claudia Preininger , Robert Hany-Schmatzberger Quick and simple: quality control of microarray data. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1572-1578 [Journal ] Charles F. Crane , Yan M. Crane A nearest-neighboring-end algorithm for genetic mapping. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1579-1591 [Journal ] Hans A. Kestler , André Müller , Thomas M. Gress , Malte Buchholz Generalized Venn diagrams: a new method of visualizing complex genetic set relations. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1592-1595 [Journal ] Matthew Holford , Naixin Li , Prakash M. Nadkarni , Hongyu Zhao VitaPad: visualization tools for the analysis of pathway data. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1596-1602 [Journal ] Vassily Hatzimanikatis , Chunhui Li , Justin A. Ionita , Christopher S. Henry , Matthew D. Jankowski , Linda J. Broadbelt Exploring the diversity of complex metabolic networks. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1603-1609 [Journal ] A. Beyer , T. Wilhelm Dynamic simulation of protein complex formation on a genomic scale. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1610-1616 [Journal ] Marc Daniel Haunschild , Bernd Freisleben , Ralf Takors , Wolfgang Wiechert Investigating the dynamic behavior of biochemical networks using model families. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1617-1625 [Journal ] Reinhard Guthke , Ulrich Möller , Martin Hoffmann , Frank Thies , Susanne Töpfer Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1626-1634 [Journal ] Joachim Kopka , Nicolas Schauer , Stephan Krueger , Claudia Birkemeyer , Björn Usadel , Eveline Bergmüller , Peter Dörmann , Wolfram Weckwerth , Yves Gibon , Mark Stitt , Lothar Willmitzer , Alisdair R. Fernie , Dirk Steinhauser GMD@CSB.DB: the Golm Metabolome Database. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1635-1638 [Journal ] Paolo Tieri , Silvana Valensin , Vito Latora , Gastone C. Castellani , Massimo Marchiori , Daniel Remondini , Claudio Franceschi Quantifying the relevance of different mediators in the human immune cell network. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1639-1643 [Journal ] Patrick Kemmeren , Thessa T. J. P. Kockelkorn , Theo Bijma , Rogier Donders , Frank Holstege Predicting gene function through systematic analysis and quality assessment of high-throughput data. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1644-1652 [Journal ] Carlos Santos , Daniela Eggle , David J. States Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1653-1658 [Journal ] Ying Tao , Carol Friedman , Yves A. Lussier Visualizing information across multidimensional post-genomic structured and textual databases. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1659-1667 [Journal ] Andrea L. Knorr , Ranjan Srivastava Evaluation of HIV-1 kinetic models using quantitative discrimination analysis. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1668-1677 [Journal ] Rasmus H. Fogh , Wayne Boucher , Wim F. Vranken , Anne Pajon , Tim J. Stevens , T. N. Bhat , John D. Westbrook , John M. C. Ionides , Ernest D. Laue A framework for scientific data modeling and automated software development. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1678-1684 [Journal ] Katy Wolstencroft , Robin McEntire , Robert Stevens , Lydia Tabernero , Andy Brass Constructing ontology-driven protein family databases. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1685-1692 [Journal ] Jin Billy Li , Miao Zhang , Susan K. Dutcher , Gary D. Stormo Procom: a web-based tool to compare multiple eukaryotic proteomes. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1693-1694 [Journal ] Weixi Li , Cathryn J. Rehmeyer , Chuck Staben , Mark L. Farman TERMINUS - Telomeric End-Read Mining IN Unassembled Sequences. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1695-1698 [Journal ] Tae-hyung Kim , Yeo-Jin Jeon , Woo-Yeon Kim , Heui-Soo Kim HESAS: HERVs Expression and Structure Analysis System. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1699-1700 [Journal ] Lauris Kaplinski , Reidar Andreson , Tarmo Puurand , Maido Remm MultiPLX: automatic grouping and evaluation of PCR primers. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1701-1702 [Journal ] Simon de Givry , Martin Bouchez , Patrick Chabrier , Denis Milan , Thomas Schiex CARH T A GENE: multipopulation integrated genetic and radiation hybrid mapping. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1703-1704 [Journal ] Thomas M. Keane , Thomas J. Naughton DSEARCH: sensitive database searching using distributed computing. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1705-170 [Journal ] Richard J. D. Rouse , Jesus Castagnetto , Roland H. Niedner PatGen - a consolidated resource for searching genetic patent sequences. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1707-1708 [Journal ] Kai M. A. Chan , Brian R. Moore SYMMETREE: whole-tree analysis of differential diversification rates. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1709-1710 [Journal ] Søren Besenbacher , Thomas Mailund , Lasse Westh-Nielsen , Christian N. S. Pedersen RBT - a tool for building refined Buneman trees. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1711-1712 [Journal ] Xun Gu , Wei Huang , Dongping Xu , Hongmei Zhang GeneContent: software for whole-genome phylogenetic analysis. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1713-1714 [Journal ] Franck Dupuis , Jean-François Sadoc , Rémi Jullien , Borislav Angelov , Jean Paul Mornon Voro3D: 3D Voronoi tessellations applied to protein structures. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1715-1716 [Journal ] Norihiro Kikuchi , Akihiko Kameyama , Shuuichi Nakaya , Hiromi Ito , Takashi Sato , Toshihide Shikanai , Yoriko Takahashi , Hisashi Narimatsu The carbohydrate sequence markup language (CabosML): an XML description of carbohydrate structures. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1717-1718 [Journal ] Gianluca Pollastri , Aoife McLysaght Porter: a new, accurate server for protein secondary structure prediction. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1719-1720 [Journal ] Yuko Tsuchiya , Kengo Kinoshita , Haruki Nakamura PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1721-1723 [Journal ] Matthias E. Futschik , Toni Crompton OLIN: optimized normalization, visualization and quality testing of two-channel microarray data. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1724-1726 [Journal ] Christian Schwager , Jonathon Blake Bloader - a batch loader application for MIAMExpress. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1727-1729 [Journal ] Holger Thiele , Peter J. Nürnberg HaploPainter: a tool for drawing pedigrees with complex haplotypes. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1730-1732 [Journal ] Christian N. K. Anderson , Uma Ramakrishnan , Yvonne L. Chan , Elizabeth A. Hadly Serial SimCoal: A population genetics model for data from multiple populations and points in time. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1733-1734 [Journal ] Sio Iong Ao , Kevin Y. Yip , Michael K. Ng , David Wai-Lok Cheung , Pui-Yee Fong , Ian Melhado , Pak Chung Sham CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1735-1736 [Journal ] Pablo Serrano-Fernández , Saleh M. Ibrahim , Dirk Koczan , Uwe K. Zettl , Steffen Möller In silico fine-mapping: narrowing disease-associated loci by intergenomics. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1737-1738 [Journal ] Steven L. Bell , Bernhard O. Palsson expa: a program for calculating extreme pathways in biochemical reaction networks. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1739-1740 [Journal ] Aaron N. Chang , Jason McDermott , Ram Samudrala An enhanced Java graph applet interface for visualizing interactomes. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1741-1742 [Journal ] Violaine Pillet , Marc Zehnder , Alexander K. Seewald , Anne-Lise Veuthey , Johann Petrak GPSDB: a new database for synonyms expansion of gene and protein names. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1743-1744 [Journal ] G. Finak , N. Godin , M. Hallett , F. Pepin , Z. Rajabi , V. Srivastava , Z. Tang BIAS: Bioinformatics Integrated Application Software. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1745-1746 [Journal ] Casey M. Bergman , Joseph W. Carlson , Susan E. Celniker Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. [Citation Graph (0, 0)][DBLP ] Bioinformatics, 2005, v:21, n:8, pp:1747-1749 [Journal ]