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Journals in DBLP

Bioinformatics
2005, volume: 21, number: 9

  1. Andrean Goede, Mathias Dunkel, Nina Mester, Cornelius Frömmel, Robert Preissner
    SuperDrug: a conformational drug database. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1751-1753 [Journal]
  2. Romesh Stanislaus, Chuming Chen, Jennifer Franklin, John Arthur, Jonas S. Almeida
    AGML Central: web based gel proteomic infrastructure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1754-1757 [Journal]
  3. Noriyuki Kitagawa, Takanori Washio, Shunichi Kosugi, Tomoya Yamashita, Kenji Higashi, Hiroshi Yanagawa, Kenichi Higo, Koji Satoh, Yasuhiro Ohtomo, Tomomi Sunako, Kazuo Murakami, Kenichi Matsubara, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Shoshi Kikuchi, Masaru Tomita
    Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1758-1763 [Journal]
  4. Jeffrey S. Morris, Kevin R. Coombes, John Koomen, Keith A. Baggerly, Ryuji Kobayashi
    Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1764-1775 [Journal]
  5. Darrell Conklin, Betty Haldeman, Zeren Gao
    Gene finding for the helical cytokines. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1776-1781 [Journal]
  6. William H. Majoros, Mihaela Pertea, Sihaela Salzberg
    Efficient implementation of a generalized pair hidden Markov model for comparative gene finding. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1782-178 [Journal]
  7. Maria Stepanova, Tatiana Tiazhelova, Mikle Skoblov, Ancha Baranova
    A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1789-1796 [Journal]
  8. Dirk Husmeier, Frank Wright, Iain Milne
    Detecting interspecific recombination with a pruned probabilistic divergence measure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1797-1806 [Journal]
  9. Shaun Mahony, David Hendrix, Aaron Golden, Terry J. Smith, Daniel S. Rokhsar
    Transcription factor binding site identification using the self-organizing map. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1807-1814 [Journal]
  10. Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin
    Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1815-1824 [Journal]
  11. J. M. Cameron, T. Hurd, B. H. Robinson
    Computational identification of human mitochondrial proteins based on homology to yeast mitochondrially targeted proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1825-1830 [Journal]
  12. Zheng Rong Yang
    Prediction of caspase cleavage sites using Bayesian bio-basis function neural networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1831-1837 [Journal]
  13. Han-Lin Li, Chang-Jui Fu
    A linear programming approach for identifying a consensus sequence on DNA sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1838-1845 [Journal]
  14. Niklaus Fankhauser, Pascal Mäser
    Identification of GPI anchor attachment signals by a Kohonen self-organizing map. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1846-1852 [Journal]
  15. Robel Y. Kahsay, Guang R. Gao, Li Liao
    An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1853-1858 [Journal]
  16. Thomas D. Wu, Colin K. Watanabe
    GMAP: a genomic mapping and alignment program for mRNA and EST sequence. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1859-1875 [Journal]
  17. Betty Lazareva-Ulitsky, Karen Diemer, Paul D. Thomas
    On the quality of tree-based protein classification. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1876-1890 [Journal]
  18. Karen Coeytaux, Anne Poupon
    Prediction of unfolded segments in a protein sequence based on amino acid composition. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1891-1900 [Journal]
  19. Fred P. Davis, Andrej Sali
    PIBASE: a comprehensive database of structurally defined protein interfaces. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1901-1907 [Journal]
  20. Alasdair T. R. Laurie, Richard M. Jackson
    Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1908-1916 [Journal]
  21. Håvard Nesvold, Anja Bråthen Kristoffersen, Arne Holst-Jensen, Knut G. Berdal
    Design of a DNA chip for detection of unknown genetically modified organisms (GMOs). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1917-1926 [Journal]
  22. Dae-Won Kim, Kwang Hyung Lee, Doheon Lee
    Detecting clusters of different geometrical shapes in microarray gene expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1927-1934 [Journal]
  23. Cristian Mircean, Ilya Shmulevich, David Cogdell, Woonyoung Choi, Yu Jia, Ioan Tabus, Stanley R. Hamilton, Wei Zhang
    Robust estimation of protein expression ratios with lysate microarray technology. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1935-1942 [Journal]
  24. William T. Barry, Andrew B. Nobel, Fred A. Wright
    Significance analysis of functional categories in gene expression studies: a structured permutation approach. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1943-1949 [Journal]
  25. Jelle J. Goeman, Jan Oosting, Anne-Marie Cleton-Jansen, Jakob K. Anninga, Hans C. van Houwelingen
    Testing association of a pathway with survival using gene expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1950-1957 [Journal]
  26. Xiaojun Di, Hajime Matsuzaki, Teresa A. Webster, Earl Hubbell, Guoying Liu, Shoulian Dong, Dan Bartell, Jing Huang, Richard Chiles, Geoffrey Yang, Mei-mei Shen, David Kulp, Giulia C. Kennedy, Rui Mei, Keith W. Jones, Simon Cawley
    Dynamic model based algorithms for screening and genotyping over 100K SNPs on oligonucleotide microarrays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1958-1963 [Journal]
  27. Staal A. Vinterbo, Eun-Young Kim, Lucila Ohno-Machado
    Small, fuzzy and interpretable gene expression based classifiers. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1964-1970 [Journal]
  28. Claudio Lottaz, Rainer Spang
    Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1971-1978 [Journal]
  29. Wenjiang J. Fu, Raymond J. Carroll, Suojin Wang
    Estimating misclassification error with small samples via bootstrap cross-validation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1979-1986 [Journal]
  30. Susmita Datta, Somnath Datta
    Empirical Bayes screening of many p-values with applications to microarray studies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1987-1994 [Journal]
  31. Marie-Laure Martin-Magniette, Julie Aubert, Eric Cabannes, Jean-Jacques Daudin
    Evaluation of the gene-specific dye bias in cDNA microarray experiments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1995-2000 [Journal]
  32. Shih-Chieh Su, C. C. Jay Kuo, Ting Chen
    Inference of missing SNPs and information quantity measurements for haplotype blocks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2001-2007 [Journal]
  33. Marcin Imielinski, Calin Belta, Ádám M. Halász, Harvey Rubin
    Investigating metabolite essentiality through genome-scale analysis of Escherichia coli production capabilities. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2008-2016 [Journal]
  34. Ross D. King, Simon M. Garrett, George Macleod Coghill
    On the use of qualitative reasoning to simulate and identify metabolic pathway. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2017-2026 [Journal]
  35. Sampsa Hautaniemi, Sourabh Kharait, Akihiro Iwabu, Alan Wells, Douglas A. Lauffenburger
    Modeling of signal-response cascades using decision tree analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2027-2035 [Journal]
  36. Weijiang Li, Hiroyuki Kurata
    A grid layout algorithm for automatic drawing of biochemical networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2036-2042 [Journal]
  37. Kinya Okada, Shigehiko Kanaya, Kiyoshi Asai
    Accurate extraction of functional associations between proteins based on common interaction partners and common domains. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2043-2048 [Journal]
  38. Rob Jelier, Guido Jenster, Lambert C. J. Dorssers, C. Christiaan van der Eijk, Erik M. van Mulligen, Barend Mons, Jan A. Kors
    Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2049-2058 [Journal]
  39. Oliver Hofmann, Dietmar Schomburg
    Concept-based annotation of enzyme classes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2059-2066 [Journal]
  40. Gordon K. Smyth, Joëlle Michaud, Hamish S. Scott
    Use of within-array replicate spots for assessing differential expression in microarray experiments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2067-2075 [Journal]
  41. Kevin R. Brown, Igor Jurisica
    Online Predicted Human Interaction Database. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2076-2082 [Journal]
  42. Jian Song, Yan Xu, Scott White, Kevin W. P. Miller, Murray Wolinsky
    SNPsFinder - a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2083-2084 [Journal]
  43. Per Gärdén, Rikard Alm, Jari Häkkinen
    PROTEIOS: an open source proteomics initiative. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2085-2087 [Journal]
  44. Jason W. H. Wong, Gerard Cagney, Hugh M. Cartwright
    SpecAlign - processing and alignment of mass spectra datasets. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2088-2090 [Journal]
  45. Kuljeet S. Sandhu, Kshitish K. Acharya
    ExPrimer: to design primers from exon-exon junctions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2091-2092 [Journal]
  46. Morris Michael, Christoph Dieterich, Martin Vingron
    SITEBLAST-rapid and sensitive local alignment of genomic sequences employing motif anchors. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2093-2094 [Journal]
  47. Frédéric Chalmel, Aurélie Lardenois, Julie Dawn Thompson, Jean Muller, José-Alain Sahel, Thierry Léveillard, Olivier Poch
    GOAnno: GO annotation based on multiple alignment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2095-2096 [Journal]
  48. Weixi Li, Cathryn J. Rehmeyer, Chuck Staben, Mark L. Farman
    TruMatch - a BLAST post-processor that identifies bona fide sequence matches to genome assemblies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2097-2098 [Journal]
  49. Francisco Azuaje
    Integrative data analysis for functional prediction: a multi-objective optimization approach. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2099-2100 [Journal]
  50. Adi Doron-Faigenboim, Adi Stern, Itay Mayrose, Eran Bacharach, Tal Pupko
    Selecton: a server for detecting evolutionary forces at a single amino-acid site. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2101-2103 [Journal]
  51. Federico Abascal, Rafael Zardoya, David Posada
    ProtTest: selection of best-fit models of protein evolution. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2104-2105 [Journal]
  52. Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer
    Mtreemix: a software package for learning and using mixture models of mutagenetic trees. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2106-2107 [Journal]
  53. Joachim Friedrich, Thomas Dandekar, Matthias Wolf, Tobias Müller
    ProfDist: a tool for the construction of large phylogenetic trees based on profile distances. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2108-2109 [Journal]
  54. Andreas Möglich, Daniel Weinfurtner, Wolfram Gronwald, Till Maurer, Hans Robert Kalbitzer
    PERMOL: restraint-based protein homology modeling using DYANA or CNS. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2110-2111 [Journal]
  55. Joern Toedling, Sebastian Schmeier, Matthias Heinig, Benjamin Georgi, Stefan Roepcke
    MACAT - microarray chromosome analysis tool. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2112-2113 [Journal]
  56. Laurie J. Heyer, D. Z. Moskowitz, J. A. Abele, P. Karnik, D. Choi, A. Malcolm Campbell, E. E. Oldham, B. K. Akin
    MAGIC Tool: integrated microarray data analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2114-2115 [Journal]
  57. Sek Won Kong, Kyu Baek Hwang, Richard D. Kim, Byoung-Tak Zhang, Steven A. Greenberg, Isaac S. Kohane, Peter J. Park
    CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2116-2117 [Journal]
  58. Yuan Ji, Chunlei Wu, Ping Liu, Jing Wang, Kevin R. Coombes
    Applications of beta-mixture models in bioinformatics. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2118-2122 [Journal]
  59. Franz Rüschendorf, Peter J. Nürnberg
    ALOHOMORA: a tool for linkage analysis using 10K SNP array data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2123-2125 [Journal]
  60. Hongyu Yang, Hongyu Wang, Alan R. Gingle
    IntegratedMap: a Web interface for integrating genetic map data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2126-2127 [Journal]
  61. Kejun Liu, Spencer V. Muse
    PowerMarker: an integrated analysis environment for genetic marker analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2128-2129 [Journal]
  62. David Posada, Taylor J. Maxwell, Alan R. Templeton
    TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2130-2132 [Journal]
  63. Chih-Yu (Carol) Chang, Joshua LaBaer
    DNA polymorphism detector: an automated tool that searches for allelic matches in public databases for discrepancies found in clone or cDNA sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2133-2135 [Journal]
  64. Abhijit Chatterjee, Kapil Mayawala, Jeremy S. Edwards, Dionisios G. Vlachos
    Time accelerated Monte Carlo simulations of biological networks using the binomial r-leap method. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2136-2137 [Journal]
  65. Anna Divoli, Teresa K. Attwood
    BioIE: extracting informative sentences from the biomedical literature. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2138-2139 [Journal]
  66. Pedro A. Reche, Hong Zhang, John-Paul Glutting, Ellis L. Reinherz
    EPIMHC: a curated database of MHC-binding peptides for customized computational vaccinology. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2140-2141 [Journal]
  67. Pei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Bo-Shu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong
    MPSS: an integrated database system for surveying a set of proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2142-2143 [Journal]
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