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Journals in DBLP

Bioinformatics
2004, volume: 20, number: 16

  1. Ziv Bar-Joseph
    Analyzing time series gene expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2493-2503 [Journal]
  2. Akira R. Kinjo, Ken Nishikawa
    Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2504-2508 [Journal]
  3. Dominique Tessier, Benjamin Bardiaux, Colette Larré, Yves Popineau
    Data mining techniques to study the disulfide-bonding state in proteins: signal peptide is a strong descriptor. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2509-2512 [Journal]
  4. Sanju Attoor, Edward R. Dougherty, Yidong Chen, Michael L. Bittner, Jeffrey M. Trent
    Which is better for cDNA-microarray-based classification: ratios or direct intensities. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2513-2520 [Journal]
  5. Delong Liu, Clarice R. Weinberg, Shyamal D. Peddada
    A geometric approach to determine association and coherence of the activation times of cell-cycling genes under differing experimental conditions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2521-2528 [Journal]
  6. Xiaoqiu Huang, Liang Ye, Hui-Hsien Chou, I-Hsuan Yang, Kun-Mao Chao
    Efficient combination of multiple word models for improved sequence comparison. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2529-2533 [Journal]
  7. Jinwook Seo, Marina Bakay, Yi-Wen Chen, Sara Hilmer, Ben Shneiderman, Eric P. Hoffman
    Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2534-2544 [Journal]
  8. Roxana Alexandridis, Shili Lin, Mark Irwin
    Class discovery and classification of tumor samples using mixture modeling of gene expression data - a unified approach. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2545-2552 [Journal]
  9. Mahlet G. Tadesse, Marina Vannucci, Pietro Liò
    Identification of DNA regulatory motifs using Bayesian variable selection. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2553-2561 [Journal]
  10. Philippe Broët, Alex Lewin, Sylvia Richardson, Cyril Dalmasso, Henri Magdelenat
    A mixture model-based strategy for selecting sets of genes in multiclass response microarray experiments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2562-2571 [Journal]
  11. Kuo-Bin Li, Praveen Issac, Arun Krishnan
    Predicting allergenic proteins using wavelet transform. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2572-2578 [Journal]
  12. Shobhit Gupta, Dorothea Zink, Bernhard Korn, Martin Vingron, Stefan A. Haas
    Genome wide identification and classification of alternative splicing based on EST data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2579-2585 [Journal]
  13. Chien-Yu Chen, Yen-Jen Oyang, Hsueh-Fen Juan
    Incremental generation of summarized clustering hierarchy for protein family analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2586-2596 [Journal]
  14. Martijn J. Schuemie, Marc Weeber, Bob J. A. Schijvenaars, Erik M. van Mulligen, C. Christiaan van der Eijk, Rob Jelier, Barend Mons, Jan A. Kors
    Distribution of information in biomedical abstracts and full-text publications. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2597-2604 [Journal]
  15. Feng Luo, Latifur Khan, Farokh B. Bastani, I-Ling Yen, Jizhong Zhou
    A dynamically growing self-organizing tree (DGSOT) for hierarchical clustering gene expression profiles. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2605-2617 [Journal]
  16. Marcel Smid, Lambert C. J. Dorssers
    GO-Mapper: functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2618-2625 [Journal]
  17. Gert R. G. Lanckriet, Tijl De Bie, Nello Cristianini, Michael I. Jordan, William Stafford Noble
    A statistical framework for genomic data fusion. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2626-2635 [Journal]
  18. Claude Pasquier, F. Girardot, K. Jevardat de Fombelle, R. Christen
    THEA: ontology-driven analysis of microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2636-2643 [Journal]
  19. Harm van Bakel, Martijn A. Huynen, Cisca Wijmenga
    Prokaryotic diversity of the Saccharomyces cerevisiae Atx1p-mediated copper pathway. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2644-2655 [Journal]
  20. Y.-F. Liu, U.-C. Yang
    SCA db: spinocerebellar ataxia candidate gene database. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2656-2661 [Journal]
  21. Koji Kyoda, Kotaro Baba, Shuichi Onami, Hiroaki Kitano
    DBRF-MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2662-2675 [Journal]
  22. Prudence W. H. Wong, Tak Wah Lam, N. Lu, Hing-Fung Ting, Siu-Ming Yiu
    An efficient algorithm for optimizing whole genome alignment with noise. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2676-2684 [Journal]
  23. Lori E. Dodd, Edward L. Korn, Lisa M. McShane, G. V. R. Chandramouli, Eric Y. Chuang
    Correcting log ratios for signal saturation in cDNA microarrays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2685-2693 [Journal]
  24. J. G. Liao, Yong Lin, Zachariah E. Selvanayagam, Weichung Joe Shih
    A mixture model for estimating the local false discovery rate in DNA microarray analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2694-2701 [Journal]
  25. Arun Krishnan, Francis Tang
    Exhaustive whole-genome tandem repeats search. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2702-2710 [Journal]
  26. Liping Ji, Kian-Lee Tan
    Mining gene expression data for positive and negative co-regulated gene clusters. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2711-2718 [Journal]
  27. Nicolas Omont, François Képès
    Transcription/replication collisions cause bacterial transcription units to be longer on the leading strand of replication. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2719-2725 [Journal]
  28. Robert Mansourian, David M. Mutch, Nicolas Antille, Jerome Aubert, Paul Fogel, Jean-Marc Le Goff, Julie Moulin, Anton Petrov, Andreas Rytz, Johannes J. Voegel, Matthew-Alan Roberts
    The Global Error Assessment (GEA) model for the selection of differentially expressed genes in microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2726-2737 [Journal]
  29. Yonatan H. Grad, Frederick P. Roth, Marc S. Halfon, George M. Church
    Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2738-2750 [Journal]
  30. Harpreet Kaur, G. P. S. Raghava
    A neural network method for prediction of ?-turn types in proteins using evolutionary information. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2751-2758 [Journal]
  31. Zheng Rong Yang
    Mining gene expression data based on template theory. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2759-2766 [Journal]
  32. Yimeng Dou, Pierre-François Baisnée, Gianluca Pollastri, Yann Pécout, James Nowick, Pierre Baldi
    ICBS: a database of interactions between protein chains mediated by ?-sheet formation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2767-2777 [Journal]
  33. Karla V. Ballman, Diane E. Grill, Ann L. Oberg, Terry M. Therneau
    Faster cyclic loess: normalizing RNA arrays via linear models. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2778-2786 [Journal]
  34. Manuel Martínez-Bueno, Antonio J. Molina-Henares, Eduardo Pareja, Juan L. Ramos, Raquel Tobes
    BacTregulators: a database of transcriptional regulators in bacteria and archaea. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2787-2791 [Journal]
  35. M. Pérez-Enciso, I. Misztal
    Qxpak: a versatile mixed model application for genetical genomics and QTL analyses. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2792-2798 [Journal]
  36. Sündüz Keles, Mark van der Laan, Chris Vulpe
    Regulatory motif finding by logic regression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2799-2811 [Journal]
  37. Olivier Delgrange, Eric Rivals
    STAR: an algorithm to Search for Tandem Approximate Repeats. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2812-2820 [Journal]
  38. Shu-Dong Zhang, Timothy W. Gant
    A statistical framework for the design of microarray experiments and effective detection of differential gene expression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2821-2828 [Journal]
  39. Bruce E. Shapiro, Michael Hucka, Andrew Finney, John Doyle
    MathSBML: a package for manipulating SBML-based biological models. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2829-2831 [Journal]
  40. Luiz G. P. Almeida, Roger F. C. Paixão, Rangel C. Souza, Gisele C. da Costa, Frank J. A. Barrientos, M. Trindade dos Santos, Darcy F. de Almeida, Ana Tereza R. Vasconcelos
    A System for Automated Bacterial (genome) Integrated Annotation - SABIA. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2832-2833 [Journal]
  41. Robert Friedman, Vikram Ekollu, John R. Rose, Austin L. Hughes
    Dblox: a genome-wide test for ancient segmental duplication. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2834-2835 [Journal]
  42. Eisuke Chikayama, Atsushi Kurotani, Yutaka Kuroda, Shigeyuki Yokoyama
    ProteoMix: an integrated and flexible system for interactively analyzing large numbers of protein sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2836-2838 [Journal]
  43. Terry M. Casstevens, Edward S. Buckler
    GDPC: connecting researchers with multiple integrated data sources. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2839-2840 [Journal]
  44. Alexander Lüdemann, Daniel Weicht, Joachim Selbig, Joachim Kopka
    PaVESy: Pathway Visualization and Editing System. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2841-2844 [Journal]
  45. Sandra Barth, Markus Fischer, Rolf D. Schmid, Jürgen Pleiss
    The database of epoxide hydrolases and haloalkane dehalogenases: one structure, many functions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2845-2847 [Journal]
  46. Fulvio Lazzarato, Giuliana Franceschinis, Marco Botta, F. Cordero, Raffaele Calogero
    RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2848-2850 [Journal]
  47. Boris Adryan, Reinhard Schuh
    Gene-Ontology-based clustering of gene expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2851-2852 [Journal]
  48. Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Masaki Fumoto, Akira Imaizumi, Nobuyoshi Sugaya, Hiroo Murakami, Makihiko Sato, Hiroyuki Toh, Katsuhisa Horimoto
    ASIAN: a website for network inference. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2853-2856 [Journal]
  49. Stephen C. Grubb, Gary A. Churchill, Molly A. Bogue
    A collaborative database of inbred mouse strain characteristics. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2857-2859 [Journal]
  50. Li Chen, Rose Oughtred, Helen M. Berman, John D. Westbrook
    TargetDB: a target registration database for structural genomics projects. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2860-2862 [Journal]
  51. W. H. Lee, V. B. Vega
    Heterogeneity detector: finding heterogeneous positions in Phred/Phrap assemblies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2863-2864 [Journal]
  52. Song Li, Hui-Hsien Chou
    LUCY2: an interactive DNA sequence quality trimming and vector removal tool. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2865-2866 [Journal]
  53. Mario A. Fares
    SWAPSC: sliding window analysis procedure to detect selective constraints. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2867-2868 [Journal]
  54. Ghislain Bidaut, Michael F. Ochs
    ClutrFree: cluster tree visualization and interpretation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2869-2871 [Journal]
  55. D. Chen, Oliver Eulenstein, David Fernández-Baca
    Rainbow: a toolbox for phylogenetic supertree construction and analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2872-2873 [Journal]
  56. Robert N. Goldberg, Yadu B. Tewari, Talapady N. Bhat
    Thermodynamics of enzyme-catalyzed reactions - a database for quantitative biochemistry. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2874-2877 [Journal]
  57. William H. Majoros, Mihaela Pertea, Steven Salzberg
    TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2878-2879 [Journal]
  58. Fang Liu, Tor-Kristian Jenssen, Vegard Nygaard, John Sack, Eivind Hovig
    FigSearch: a figure legend indexing and classification system. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2880-2882 [Journal]
  59. P. D'Addabbo, Luca Lenzi, Federica Facchin, Raffaella Casadei, Silvia Canaider, Lorenza Vitale, Flavia Frabetti, Paolo Carinci, Maria Zannotti, Pierluigi Strippoli
    GeneRecords: a relational database for GenBank flat file parsing and data manipulation in personal computers. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2883-2885 [Journal]
  60. Tulika Prakash, Mamta Khandelwal, Dipayan Dasgupta, Debasis Dash, Samir K. Brahmachari
    CoPS: Comprehensive Peptide Signature Database. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2886-2888 [Journal]
  61. Andreas M. Boehm, Florian Grosse-Coosmann, Albert Sickmann
    Command line tool for calculating theoretical MS spectra for given sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2889-2891 [Journal]
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