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Journals in DBLP

Bioinformatics
2004, volume: 20, number: 17

  1. Hui-Hsien Chou, An-Ping Hsia, Denise L. Mooney, Patrick S. Schnable
    Picky: oligo microarray design for large genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2893-2902 [Journal]
  2. Lisa M. Schilling, Jonathan D. Wren, Robert P. Dellavalle
    Letter to the Editor. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2903-2903 [Journal]
  3. Neeraj Pandey, Mythily Ganapathi, Kaushal Kumar, Dipayan Dasgupta, Sushanta Kumar Das Sutar, Debasis Dash
    Comparative analysis of protein unfoldedness in human housekeeping and non-housekeeping proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2904-2910 [Journal]
  4. Eric Bonnet, Jan Wuyts, Pierre Rouzé, Yves Van de Peer
    Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2911-2917 [Journal]
  5. Xiaobo Zhou, Xiaodong Wang, Ranadip Pal, Ivan Ivanov, Michael L. Bittner, Edward R. Dougherty
    A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2918-2927 [Journal]
  6. Sven Rahmann, Christine Gräfe
    Mean and variance of the Gibbs free energy of oligonucleotides in the nearest neighbor model under varying conditions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2928-2933 [Journal]
  7. Iosifina Pournara, Lorenz Wernisch
    Reconstruction of gene networks using Bayesian learning and manipulation experiments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2934-2942 [Journal]
  8. Madhuchhanda Bhattacharjee, Colin C. Pritchard, Peter S. Nelson, Elja Arjas
    Bayesian integrated functional analysis of microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2943-2953 [Journal]
  9. Wenqing He
    A spline function approach for detecting differentially expressed genes in microarray data analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2954-2963 [Journal]
  10. Gábor E. Tusnády, Zsuzsanna Dosztányi, István Simon
    Transmembrane proteins in the Protein Data Bank: identification and classification. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2964-2972 [Journal]
  11. Ji-Ping Z. Wang, Bruce Lindsay, James Leebens-Mack, Liying Cui, P. Kerr Wall, Webb C. Miller, Claude W. dePamphilis
    EST clustering error evaluation and correction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2973-2984 [Journal]
  12. Christian Baumgartner, Christian Böhm, Daniela Baumgartner, G. Marini, K. Weinberger, B. Olgemöller, B. Liebl, A. A. Roscher
    Supervised machine learning techniques for the classification of metabolic disorders in newborns. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2985-2996 [Journal]
  13. Cynthia Sims Parr, Bongshin Lee, Dana Campbell, Benjamin B. Bederson
    Visualizations for taxonomic and phylogenetic trees. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:2997-3004 [Journal]
  14. Jörn Lewin, Armin O. Schmitt, Péter Adorján, Thomas Hildmann 0002, Christian Piepenbrock
    Quantitative DNA methylation analysis based on four-dye trace data from direct sequencing of PCR amplificates. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3005-3012 [Journal]
  15. A. D. King, Natasa Przulj, Igor Jurisica
    Protein complex prediction via cost-based clustering. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3013-3020 [Journal]
  16. Mark Girolami, Rainer Breitling
    Biologically valid linear factor models of gene expression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3021-3033 [Journal]
  17. Robert Tibshirani, Trevor Hastie, Balasubramanian Narasimhan, Scott Soltys, Gongyi Shi, Albert Koong, Quynh-Thu Le
    Sample classification from protein mass spectrometry, by 'peak probability contrasts'. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3034-3044 [Journal]
  18. Thomas M. Oinn, Matthew Addis, Justin Ferris, Darren Marvin, Martin Senger, R. Mark Greenwood, Tim Carver, Kevin Glover, Matthew R. Pocock, Anil Wipat, Peter Li
    Taverna: a tool for the composition and enactment of bioinformatics workflows. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3045-3054 [Journal]
  19. Pål Sætrom
    Predicting the efficacy of short oligonucleotides in antisense and RNAi experiments with boosted genetic programming. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3055-3063 [Journal]
  20. Trees-Juen Chuang, Feng-Chi Chen, Meng-Yuan Chou
    A comparative method for identification of gene structures and alternatively spliced variants. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3064-3079 [Journal]
  21. Changyu Hu II, Xiang Li, Jie Liang
    Developing optimal non-linear scoring function for protein design. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3080-3098 [Journal]
  22. Yan Liu, Jaime G. Carbonell, Judith Klein-Seetharaman, Vanathi Gopalakrishnan
    Comparison of probabilistic combination methods for protein secondary structure prediction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3099-3107 [Journal]
  23. Albert Hsiao, D. S. Worrall, Jerrold M. Olefsky, Shankar Subramaniam
    Variance-modeled posterior inference of microarray data: detecting gene-expression changes in 3T3-L1 adipocytes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3108-3127 [Journal]
  24. Glen A. Satten, Somnath Datta, Hercules Moura, Adrian R. Woolfitt, Maria da G. Carvalho, George M. Carlone, Barun K. De, Antonis Pavlopoulos, John R. Barr
    Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3128-3136 [Journal]
  25. Jun Sese, Yukinori Kurokawa, Morito Monden, Kikuya Kato, Shinichi Morishita
    Constrained clusters of gene expression profiles with pathological features. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3137-3145 [Journal]
  26. Yinglei Lai, Baolin Wu, Liang Chen, Hongyu Zhao
    A statistical method for identifying differential gene-gene co-expression patterns. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3146-3155 [Journal]
  27. Ben-Yang Liao, Yu-Jung Chang, Jan-Ming Ho, Ming-Jing Hwang
    The UniMarker (UM) method for synteny mapping of large genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3156-3165 [Journal]
  28. Jing Wang, Kevin R. Coombes, W. Edward Highsmith, M. J. Keating, Lynne V. Abruzzo
    Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: a meta-analysis of three microarray studies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3166-3178 [Journal]
  29. Jong-Hun Kim, Juyoung Lee, Bermseok Oh, Kuchan Kimm, InSong Koh
    Prediction of phosphorylation sites using SVMs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3179-3184 [Journal]
  30. Nathalie Pochet, Frank De Smet, Johan A. K. Suykens, Bart De Moor
    Systematic benchmarking of microarray data classification: assessing the role of non-linearity and dimensionality reduction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3185-3195 [Journal]
  31. David Baird, Peter Johnstone, Theresa Wilson
    Normalization of microarray data using a spatial mixed model analysis which includes splines. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3196-3205 [Journal]
  32. David P. A. Corney, Bernard F. Buxton, William B. Langdon, David T. Jones
    BioRAT: extracting biological information from full-length papers. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3206-3213 [Journal]
  33. Ralf Bundschuh
    Computational prediction of RNA editing sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3214-3220 [Journal]
  34. Reuben Thomas, Sanjay Mehrotra, Eleftherios T. Papoutsakis, Vassily Hatzimanikatis
    A model-based optimization framework for the inference on gene regulatory networks from DNA array data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3221-3235 [Journal]
  35. Rasko Leinonen, Federico Garcia Diez, David Binns, Wolfgang Fleischmann, Rodrigo Lopez, Rolf Apweiler
    UniProt archive. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3236-3237 [Journal]
  36. Don Gilbert, Yoshihiro Ugawa, Markus Buchhorn, Tin Wee Tan, Akira Mizushima, Hyun-Chul Kim, Kilnam Chon, Seyeon Weon, Juncai Ma, Yoshihiro Ichiyanagi, Der-Ming Liou, Somnuk Keretho, Suhaimi Napis
    Bio-Mirror project for public bio-data distribution. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3238-3240 [Journal]
  37. Fredrik Pettersson, Oskar Jonsson, Lon R. Cardon
    GOLDsurfer: three dimensional display of linkage disequilibrium. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3241-3243 [Journal]
  38. Jaime R. Robles, Edwin J. C. G. van den Oord
    lga972: a cross-platform application for optimizing LD studies using a genetic algorithm. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3244-3245 [Journal]
  39. Alok J. Saldanha
    Java Treeview - extensible visualization of microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3246-3248 [Journal]
  40. Ryan T. McDonald, R. Scott Winters, Mark Mandel, Yang Jin, Peter S. White, Fernando C. N. Pereira
    An entity tagger for recognizing acquired genomic variations in cancer literature. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3249-3251 [Journal]
  41. Stacia K. Wyman, Robert K. Jansen, Jeffrey L. Boore
    Automatic annotation of organellar genomes with DOGMA. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3252-3255 [Journal]
  42. WangSen Feng, Lusheng Wang, Daming Zhu
    CTRD: a fast applet for computing signed translocation distance between genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3256-3257 [Journal]
  43. Ioannis C. Spyropoulos, Theodore Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas
    TMRPres2D: high quality visual representation of transmembrane protein models. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3258-3260 [Journal]
  44. Thomas Mailund, Christian N. S. Pedersen
    QuickJoin - fast neighbour-joining tree reconstruction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3261-3262 [Journal]
  45. Tianhua Niu, Zhenjun Hu
    SNPicker: a graphical tool for primer picking in designing mutagenic endonuclease restriction assays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3263-3265 [Journal]
  46. Eugen C. Buehler, Jeffrey R. Sachs, Kui Shao, Ansuman Bagchi, Lyle H. Ungar
    The CRASSS plug-in for integrating annotation data with hierarchical clustering results. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3266-3269 [Journal]
  47. Bo Kyeng Hou, Jin Sik Kim, Ji Hoon Jun, Dong-Yup Lee, Yong Wook Kim, Sujin Chae, Mira Roh, Yong-Ho In, Sang Yup Lee
    BioSilico: an integrated metabolic database system. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3270-3272 [Journal]
  48. Tao-Wei Huang, An-Chi Tien, Wen-Shien Huang, Yuan-Chii G. Lee, Chin-Lin Peng, Huei-Hun Tseng, Cheng-Yan Kao, Chi-Ying F. Huang
    POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3273-3276 [Journal]
  49. Patrick May, Stefan Barthel, Ina Koch
    PTGL - a web-based database application for protein topologies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3277-3279 [Journal]
  50. M. Bahlo, Lei Xing, C. R. Wilkinson
    HumanMSD and MouseMSD: generating genetic maps for human and murine microsatellite markers. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3280-3283 [Journal]
  51. Alexey V. Antonov, Igor V. Tetko, Volodymyr V. Prokopenko, Denis Kosykh, Hans-Werner Mewes
    A web portal for classification of expression data using maximal margin linear programming. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3284-3285 [Journal]
  52. Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández
    Phan3D: design of biological phantoms in 3D electron microscopy. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3286-3288 [Journal]
  53. Michael L. Blinov, James R. Faeder, Byron Goldstein, William S. Hlavacek
    BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3289-3291 [Journal]
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