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Journals in DBLP

Bioinformatics
2005, volume: 21, number: 10

  1. Svava Ósk Jónsdóttir, Flemming Steen Jørgensen, Søren Brunak
    Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2145-2160 [Journal]
  2. Prachee Prakash, Sailu Yellaboina, Akash Ranjan, Seyed Ehetsham Hasnain
    Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis open reading frames. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2161-2166 [Journal]
  3. Akira R. Kinjo, Ken Nishikawa
    Recoverable one-dimensional encoding of three-dimensional protein structures. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2167-2170 [Journal]
  4. C. Thach Nguyen, Y. C. Tay, Louxin Zhang
    Divide-and-conquer approach for the exemplar breakpoint distance. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2171-2176 [Journal]
  5. Jayson Falkner, Philip Andrews
    Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2177-2184 [Journal]
  6. Lei Bao, Yan Cui
    Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2185-2190 [Journal]
  7. Lee Lancashire, O. Schmid, H. Shah, Graham Ball
    Classification of bacterial species from proteomic data using combinatorial approaches incorporating artificial neural networks, cluster analysis and principal components analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2191-2199 [Journal]
  8. J. S. Yu, S. Ongarello, R. Fiedler, X. W. Chen, G. Toffolo, Claudio Cobelli, Z. Trajanoski
    Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2200-2209 [Journal]
  9. Halima Bensmail, Jennifer Golek, Michelle M. Moody, John O. Semmes, Abdelali Haoudi
    A novel approach for clustering proteomics data using Bayesian fast Fourier transform. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2210-2224 [Journal]
  10. Valerio Freschi, Alessandro Bogliolo
    Using sequence compression to speedup probabilistic profile matching. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2225-2229 [Journal]
  11. Robert G. Beiko, Cheong Xin Chan, Mark A. Ragan
    A word-oriented approach to alignment validation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2230-2239 [Journal]
  12. Alexander V. Favorov, Mikhail S. Gelfand, Anna V. Gerasimova, D. A. Ravcheev, Andrey A. Mironov, Vsevolod Makeev
    A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2240-2245 [Journal]
  13. David H. Mathews
    Predicting a set of minimal free energy RNA secondary structures common to two sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2246-2253 [Journal]
  14. Ruadhan A. O'Flanagan, Guillaume Paillard, Richard Lavery, Anirvan M. Sengupta
    Non-additivity in protein-DNA binding. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2254-2263 [Journal]
  15. Kyounghwa Bae, Bani K. Mallick, Christine G. Elsik
    Prediction of protein interdomain linker regions by a hidden Markov model. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2264-2270 [Journal]
  16. Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Prudence W. H. Wong, Siu-Ming Yiu, X. Fan
    The mutated subsequence problem and locating conserved genes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2271-2278 [Journal]
  17. Mikael Bodén, John Hawkins
    Prediction of subcellular localization using sequence-biased recurrent networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2279-2286 [Journal]
  18. Robel Y. Kahsay, Guoli Wang, Guang R. Gao, Li Liao, Roland L. Dunbrack Jr.
    Quasi-consensus-based comparison of profile hidden Markov models for protein sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2287-2293 [Journal]
  19. Ian Holmes
    Using evolutionary Expectation Maximization to estimate indel rates. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2294-2300 [Journal]
  20. Dan Tsafrir, Ilan Tsafrir, Liat Ein-Dor, Or Zuk, Daniel A. Notterman, Eytan Domany
    Sorting points into neighborhoods (SPIN): data analysis and visualization by ordering distance matrices. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2301-2308 [Journal]
  21. George M. Garrity, Timothy G. Lilburn
    Self-organizing and self-correcting classifications of biological data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2309-2314 [Journal]
  22. Andrew J. Bordner, Ruben Abagyan
    REVCOM: a robust Bayesian method for evolutionary rate estimation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2315-2321 [Journal]
  23. Peter F. Arndt, Terence Hwa
    Identification and measurement of neighbor-dependent nucleotide substitution processes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2322-2328 [Journal]
  24. Stefan R. Henz, Daniel H. Huson, Alexander F. Auch, Kay Nieselt-Struwe, Stephan C. Schuster
    Whole-genome prokaryotic phylogeny. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2329-2335 [Journal]
  25. Fabrizio Ferrè, Peter Clote
    Disulfide connectivity prediction using secondary structure information and diresidue frequencies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2336-2346 [Journal]
  26. Richard J. Morris, Rafael Najmanovich, Abdullah Kahraman, Janet M. Thornton
    Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2347-2355 [Journal]
  27. Jacek Blazewicz, Marta Szachniuk, Adam Wojtowicz
    RNA tertiary structure determination: NOE pathways construction by tabu search. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2356-2361 [Journal]
  28. Yuzhen Ye, Adam Godzik
    Multiple flexible structure alignment using partial order graphs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2362-2369 [Journal]
  29. Qidong Zhang, Sukjoon Yoon, William J. Welsh
    Improved method for predicting ?-turn using support vector machine. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2370-2374 [Journal]
  30. Markus Leber, Lars Kaderali, Alexander Schönhuth, Rainer Schrader
    A fractional programming approach to efficient DNA melting temperature calculation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2375-2382 [Journal]
  31. Örjan Carlborg, D. J. De Koning, Kenneth F. Manly, Elissa J. Chesler, Robert W. Williams, C. S. Haley
    Methodological aspects of the genetic dissection of gene expression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2383-2393 [Journal]
  32. Ka Yee Yeung, Roger Eugene Bumgarner, Adrian E. Raftery
    Bayesian model averaging: development of an improved multi-class, gene selection and classification tool for microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2394-2402 [Journal]
  33. Hongzhe Li, Yihui Luan
    Boosting proportional hazards models using smoothing splines, with applications to high-dimensional microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2403-2409 [Journal]
  34. Wotao Yin, Terrence Chen, Xiang Sean Zhou, Amit Chakraborty
    Background correction for cDNA microarray images using the TV+L1 model. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2410-2416 [Journal]
  35. Muhammad Shoaib B. Sehgal, Iqbal Gondal, Laurence Dooley
    Collateral missing value imputation: a new robust missing value estimation algorithm for microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2417-2423 [Journal]
  36. Christian H. Busold, Stefan Winter, Nicole C. Hauser, Andrea Bauer, Jürgen Dippon, Jörg D. Hoheisel, Kurt Fellenberg
    Integration of GO annotations in Correspondence Analysis: facilitating the interpretation of microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2424-2429 [Journal]
  37. K. K. Dobbin, E. S. Kawasaki, D. W. Petersen, R. M. Simon
    Characterizing dye bias in microarray experiments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2430-2437 [Journal]
  38. Jörg Rahnenführer, Niko Beerenwinkel, Wolfgang A. Schulz, Christian Hartmann, Andreas von Deimling, Bernd Wullich, Thomas Lengauer
    Estimating cancer survival and clinical outcome based on genetic tumor progression scores. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2438-2446 [Journal]
  39. Yuehua Cui, Rongling Wu
    Mapping genome-genome epistasis: a high-dimensional model. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2447-2455 [Journal]
  40. Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li, Xiang-Sun Zhang
    Haplotype reconstruction from SNP fragments by minimum error correction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2456-2462 [Journal]
  41. Dmitry A. Konovalov, Bruce E. Litow, Nigel Bajema
    Partition-distance via the assignment problem. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2463-2468 [Journal]
  42. Wei Zhao, Ying Q. Chen, George Casella, James M. Cheverud, Rongling Wu
    A non-stationary model for functional mapping of complex traits. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2469-2477 [Journal]
  43. Nobukazu Ohki, Masatoshi Hagiwara
    Bio-Object, a stochastic simulator for post-transcriptional regulation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2478-2487 [Journal]
  44. Tsuyoshi Kato, Koji Tsuda, Kiyoshi Asai
    Selective integration of multiple biological data for supervised network inference. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2488-2495 [Journal]
  45. I. Res, I. Mihalek, Olivier Lichtarge
    An evolution based classifier for prediction of protein interfaces without using protein structures. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2496-2501 [Journal]
  46. Daniel Shegogue, W. Jim Zheng
    Object-oriented biological system integration: a SARS coronavirus example. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2502-2509 [Journal]
  47. Feng-Chi Chen, Trees-Juen Chuang
    ESTviewer: a web interface for visualizing mouse, rat, cattle, pig and chicken conserved ESTs in human genes and human alternatively spliced variants. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2510-2513 [Journal]
  48. Kwangmin Choi, Yu Ma, Jeong-Hyeon Choi, Sun Kim
    PLATCOM: a Platform for Computational Comparative Genomics. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2514-2516 [Journal]
  49. Fengkai Zhang, Zhongming Zhao
    SNPNB: analyzing neighboring-nucleotide biases on single nucleotide polymorphisms (SNPs). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2517-2519 [Journal]
  50. Igor V. Tetko, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Gisela Fobo, Andreas Ruepp, Alexey V. Antonov, Dimitrij Surmeli, Hans-Werner Mewes
    MIPS bacterial genomes functional annotation benchmark dataset. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2520-2521 [Journal]
  51. Manoj Bhasin, Aarti Garg, G. P. S. Raghava
    PSLpred: prediction of subcellular localization of bacterial proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2522-2524 [Journal]
  52. Dariusz Plewczynski, Adrian Tkacz, Lucjan Stanislaw Wyrwicz, Leszek Rychlewski
    AutoMotif server: prediction of single residue post-translational modifications in proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2525-2527 [Journal]
  53. Per Unneberg, Michael Strömberg, Fredrik Sterky
    SNP discovery using advanced algorithms and neural networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2528-2530 [Journal]
  54. Sergei L. Kosakovsky Pond, Simon D. W. Frost
    Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2531-2533 [Journal]
  55. Carlos J. Camacho, Chao Zhang
    FastContact: rapid estimate of contact and binding free energies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2534-2536 [Journal]
  56. Gilleain M. Torrance, David R. Gilbert, Ioannis Michalopoulos, David R. Westhead
    Protein structure topological comparison, discovery and matching service. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2537-2538 [Journal]
  57. Jason E. Donald, Isaac A. Hubner, Veronica Rotemberg, Eugene I. Shakhnovich, Leonid A. Mirny
    CoC: a database of universally conserved residues in protein folds. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2539-2540 [Journal]
  58. Sungsam Gong, Giseok Yoon, Insoo Jang, Dan M. Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak
    PSIbase: a database of Protein Structural Interactome map (PSIMAP). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2541-2543 [Journal]
  59. Ivan G. Costa, Alexander Schönhuth, Alexander Schliep
    The Graphical Query Language: a tool for analysis of gene expression time-courses. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2544-2545 [Journal]
  60. Nadia Bolshakova, Francisco Azuaje, Padraig Cunningham
    A knowledge-driven approach to cluster validity assessment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2546-2547 [Journal]
  61. Alexei A. Sharov, Dawood B. Dudekula, Minoru S. H. Ko
    A web-based tool for principal component and significance analysis of microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2548-2549 [Journal]
  62. John Boyle
    Gene-Expression Omnibus integration and clustering Tools in SeqExpress. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2550-2551 [Journal]
  63. Hui Sun Leong, Tim Yates, Claire L. Wilson, Crispin J. Miller
    ADAPT: a database of affymetrix probesets and transcripts. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2552-2553 [Journal]
  64. Su Young Kim, Suk Woo Nam, Sug Hyung Lee, Won Sang Park, Nam Jin Yoo, Jung Young Lee, Yeun-Jun Chung
    ArrayCyGHt: a web application for analysis and visualization of array-CGH data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2554-2555 [Journal]
  65. Nandita Mukhopadhyay, Lee Almasy, Mark Schroeder, William P. Mulvihill, Daniel E. Weeks
    Mega2: data-handling for facilitating genetic linkage and association analyses. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2556-2557 [Journal]
  66. Shailesh V. Date, Edward M. Marcotte
    Protein function prediction using the Protein Link EXplorer (PLEX). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2558-2559 [Journal]
  67. Jing Ding, Karthikeyan Viswanathan, Daniel Berleant, Laron M. Hughes, Eve Syrkin Wurtele, Daniel A. Ashlock, Julie A. Dickerson, Andy W. Fulmer, Patrick S. Schnable
    Using the biological taxonomy to access biological literature with PathBinderH. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2560-2562 [Journal]
  68. Pierre-Étienne Jacques, Alain L. Gervais, Mathieu Cantin, Jean-Francois Lucier, Guillaume Dallaire, Geneviève Drouin, Luc Gaudreau, Jean Goulet, Ryszard Brzezinski
    MtbRegList, a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2563-2565 [Journal]
  69. Ana Tereza R. Vasconcelos, Ana Carolina R. Guimarães, Carlos Henrique M. Castelletti, Célia S. Caruso, Cristina Ribeiro, Fabiano Yokaichiya, Geraldo R. G. Armôa, Gislaine da Silva P. Pereira, Israel T. da Silva, Carlos G. Schrago, Adélia L. V. Fernandes, Aline R. da Silveira, André G. Carneiro, Bruno M. Carvalho, Carlos Juliano M. Viana, Daniel Gramkow, Franklin J. Lima, Luiz G. G. Corrêa, Maurício de Alvarenga Mudado, Pablo Nehab-Hess, Rangel de Souza, Régis L. Corrêa, Claudia A. M. Russo
    MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2566-2567 [Journal]
  70. AnYuan Guo, Kun He, Di Liu, Shunong Bai, Xiaocheng Gu, Liping Wei, Jingchu Luo
    DATF: a database of Arabidopsis transcription factors. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2568-2569 [Journal]
  71. Tariq Riaz, Hen Ley Hor, Arun Krishnan, Francis Tang, Kuo-Bin Li
    WebAllergen: a web server for predicting allergenic proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2570-2571 [Journal]
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