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Journals in DBLP

Bioinformatics
2005, volume: 21, number: 7

  1. Alexey V. Kochetov
    AUG codons at the beginning of protein coding sequences are frequent in eukaryotic mRNAs with a suboptimal start codon context. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:837-840 [Journal]
  2. Matthieu Legendre, André Lambert, Daniel Gautheret
    Profile-based detection of microRNA precursors in animal genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:841-845 [Journal]
  3. Vladimir Paar, Nenad Pavin, Marija Rosandic, Matko Gluncic, Ivan Basar, Robert Pezer, Sonja Durajlija Zinic
    ColorHOR-novel graphical algorithm for fast scan of alpha satellite higher-order repeats and HOR annotation for GenBank sequence of human genome. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:846-852 [Journal]
  4. Daniela Bartels, Sebastian Kespohl, Stefan Albaum, Tanja Drüke, Alexander Goesmann, Julia Herold, Olaf Kaiser, Alfred Pühler, Friedhelm Pfeiffer, Günter Raddatz, Jens Stoye, Folker Meyer, Stephan C. Schuster
    BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:853-859 [Journal]
  5. Roger M. Jarvis, Royston Goodacre
    Genetic algorithm optimization for pre-processing and variable selection of spectroscopic data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:860-868 [Journal]
  6. Peng Yin, Alexander J. Hartemink
    Theoretical and practical advances in genome halving. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:869-879 [Journal]
  7. Benjamin P. Westover, Jeremy D. Buhler, Justin L. Sonnenburg, Jeffrey I. Gordon
    Operon prediction without a training set. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:880-888 [Journal]
  8. Shahid H. Bokhari, Jon R. Sauer
    A parallel graph decomposition algorithm for DNA sequencing with nanopores. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:889-896 [Journal]
  9. Gideon Dror, Rotem Sorek, Ron Shamir
    Accurate identification of alternatively spliced exons using support vector machine. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:897-901 [Journal]
  10. Yi-Kuo Yu, Stephen F. Altschul
    The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:902-911 [Journal]
  11. Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa
    Fast and accurate database homology search using upper bounds of local alignment scores. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:912-921 [Journal]
  12. Chiara Sabatti, Lars Rohlin, Kenneth Lange, James C. Liao
    Vocabulon: a dictionary model approach for reconstruction and localization of transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:922-931 [Journal]
  13. January Weiner, Geraint Thomas, Erich Bornberg-Bauer
    Rapid motif-based prediction of circular permutations in multi-domain proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:932-937 [Journal]
  14. Wei-Mou Zheng
    Relation between weight matrix and substitution matrix: motif search by similarity. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:938-943 [Journal]
  15. Kuo-Chen Chou, Yu-Dong Cai
    Predicting protein localization in budding Yeast. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:944-950 [Journal]
  16. Johannes Söding
    Protein homology detection by HMM?CHMM comparison. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:951-960 [Journal]
  17. M. Michael Gromiha, Makiko Suwa
    A simple statistical method for discriminating outer membrane proteins with better accuracy. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:961-968 [Journal]
  18. Thomas M. Keane, Thomas J. Naughton, Simon A. A. Travers, James O. McInerney, G. P. McCormack
    DPRml: distributed phylogeny reconstruction by maximum likelihood. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:969-974 [Journal]
  19. Gavin E. Crooks, Steven E. Brenner
    An alternative model of amino acid replacement. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:975-980 [Journal]
  20. Dominik Gront, Andrzej Kolinski
    A new approach to prediction of short-range conformational propensities in proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:981-987 [Journal]
  21. John D. Westbrook, Nobutoshi Ito, Haruki Nakamura, Kim Henrick, Helen M. Berman
    PDBML: the representation of archival macromolecular structure data in XML. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:988-992 [Journal]
  22. Tom M. W. Nye, Carlo Berzuini, Walter R. Gilks, M. Madan Babu, Sarah A. Teichmann
    Statistical analysis of domains in interacting protein pairs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:993-1001 [Journal]
  23. Erik Sandelin
    Extracting multiple structural alignments from pairwise alignments: a comparison of a rigorous and a heuristic approach. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1002-1009 [Journal]
  24. Xin Yuan, Christopher Bystroff
    Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1010-1019 [Journal]
  25. Ilona Kifer, Ori Sasson, Michal Linial
    Predicting fold novelty based on ProtoNet hierarchical classification. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1020-1027 [Journal]
  26. Carleton L. Kingsford, Bernard Chazelle, Mona Singh
    Solving and analyzing side-chain positioning problems using linear and integer programming. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1028-1039 [Journal]
  27. F. R. Pinto, L. Ashley Cowart, Yusuf A. Hannun, B. Rohrer, Jonas S. Almeida
    Local correlation of expression profiles with gene annotations-proof of concept for a general conciliatory method. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1037-1045 [Journal]
  28. Chao Sima, Ulisses Braga-Neto, Edward R. Dougherty
    Superior feature-set ranking for small samples using bolstered error estimation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1046-1054 [Journal]
  29. Yuan Ji, Kam-Wah Tsui, KyungMann Kim
    A novel means of using gene clusters in a two-step empirical Bayes method for predicting classes of samples. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1055-1061 [Journal]
  30. Hisanori Kiryu, Taku Oshima, Kiyoshi Asai
    Extracting relations between promoter sequences and their strengths from microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1062-1068 [Journal]
  31. Rajarajeswari Balasubramaniyan, Eyke Hüllermeier, Nils Weskamp, Jörg Kämper
    Clustering of gene expression data using a local shape-based similarity measure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1069-1077 [Journal]
  32. J. E. Eckel, C. Gennings, Terry M. Therneau, L. D. Burgoon, D. R. Boverhof, T. R. Zacharewski
    Normalization of two-channel microarray experiments: a semiparametric approach. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1078-1083 [Journal]
  33. Yee Hwa Yang, Yuanyuan Xiao, Mark R. Segal
    Identifying differentially expressed genes from microarray experiments via statistic synthesis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1084-1093 [Journal]
  34. Sébastien Rimour, David Hill, Cécile Militon, Pierre Peyret
    GoArrays: highly dynamic and efficient microarray probe design. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1094-1103 [Journal]
  35. Gersende Fort, Sophie Lambert-Lacroix
    Classification using partial least squares with penalized logistic regression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1104-1111 [Journal]
  36. Antonio Reverter, Wes Barris, Sean McWilliam, Keren A. Byrne, Yong H. Wang, Siok-Hwee Tan, Nick Hudson, Brian P. Dalrymple
    Validation of alternative methods of data normalization in gene co-expression studies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1112-1120 [Journal]
  37. David R. Bickel
    Probabilities of spurious connections in gene networks: application to expression time series. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1121-1128 [Journal]
  38. Yoram Ben-Shaul, Hagai Bergman, Hermona Soreq
    Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1129-1137 [Journal]
  39. Sven Bilke, Qing-Rong Chen, Craig C. Whiteford, Javed I. Khan
    Detection of low level genomic alterations by comparative genomic hybridization based on cDNA micro-arrays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1138-1145 [Journal]
  40. Paul H. C. Eilers, Renée X. de Menezes
    Quantile smoothing of array CGH data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1146-1153 [Journal]
  41. Shuhei Kimura, Kaori Ide, Aiko Kashihara, Makoto Kano, Mariko Hatakeyama, Ryoji Masui, Noriko Nakagawa, Shigeyuki Yokoyama, Seiki Kuramitsu, Akihiko Konagaya
    Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1154-1163 [Journal]
  42. Ulrik de Lichtenberg, Lars Juhl Jensen, Anders Fausbøll, Thomas S. Jensen, Peer Bork, Søren Brunak
    Comparison of computational methods for the identification of cell cycle-regulated genes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1164-1171 [Journal]
  43. M. Kloster, C. Tang, N. S. Wingreen
    Finding regulatory modules through large-scale gene-expression data analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1172-1179 [Journal]
  44. Kuan-Yao Tsai, Feng-Sheng Wang
    Evolutionary optimization with data collocation for reverse engineering of biological networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1180-1188 [Journal]
  45. Syed Asad Rahman, P. Advani, R. Schunk, Rainer Schrader, Dietmar Schomburg
    Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1189-1193 [Journal]
  46. Gang Liu, Mark T. Swihart, Sriram Neelamegham
    Sensitivity, principal component and flux analysis applied to signal transduction: the case of epidermal growth factor mediated signaling. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1194-1202 [Journal]
  47. Robert Urbanczik, C. Wagner
    An improved algorithm for stoichiometric network analysis: theory and applications. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1203-1210 [Journal]
  48. Ranadip Pal, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty
    Intervention in context-sensitive probabilistic Boolean networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1211-1218 [Journal]
  49. Ina Koch, Bjørn H. Junker, Monika Heiner
    Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1219-1226 [Journal]
  50. Asako Koike, Yoshiki Niwa, Toshihisa Takagi
    Automatic extraction of gene/protein biological functions from biomedical text. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1227-1236 [Journal]
  51. Yingyao Zhou, Jason A. Young, Andrey Santrosyan, Kaisheng Chen, S. Frank Yan, Elizabeth A. Winzeler
    In silico gene function prediction using ontology-based pattern identification. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1237-1245 [Journal]
  52. Julie Chabalier, Cécile Capponi, Yves Quentin, Gwennaele Fichant
    ISYMOD: a knowledge warehouse for the identification, assembly and analysis of bacterial integrated systems. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1246-1256 [Journal]
  53. Georgios V. Gkoutos, Eain C. J. Green, Simon Greenaway, Andrew Blake, Ann-Marie Mallon, John M. Hancock
    CRAVE: a database, middleware and visualization system for phenotype ontologies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1257-1262 [Journal]
  54. Michael D. Gadberry, Simon T. Malcomber, Andrew N. Doust, Elizabeth A. Kellogg
    Primaclade - a flexible tool to find conserved PCR primers across multiple species. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1263-1264 [Journal]
  55. Jian Xu, Jeffrey I. Gordon
    MapLinker: a software tool that aids physical map-linked whole genome shotgun assembly. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1265-1266 [Journal]
  56. Ivo Van Walle, Ignace Lasters, Lode Wyns
    SABmark- a benchmark for sequence alignment that covers the entire known fold space. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1267-1268 [Journal]
  57. Lars Kiemer, Jannick Dyrløv Bendtsen, Nikolaj Blom
    NetAcet: prediction of N-terminal acetylation sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1269-1270 [Journal]
  58. Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff
    Multiple sequence alignment with user-defined constraints at GOBICS. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1271-1273 [Journal]
  59. Dimitris Paraskevis, Koen Deforche, P. Lemey, G. Magiorkinis, A. Hatzakis, Anne-Mieke Vandamme
    SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1274-1275 [Journal]
  60. Gábor E. Tusnády, Zsuzsanna Dosztányi, István Simon
    TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1276-1277 [Journal]
  61. Victor E. Gerth, Peter D. Vize
    A Java tool for dynamic web-based 3D visualization of anatomy and overlapping gene or protein expression patterns. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1278-1279 [Journal]
  62. Gilles Caraux, Sylvie Pinloche
    PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1280-1281 [Journal]
  63. Bernhard Hiller, Jutta Bradtke, Harald Balz, Harald Rieder
    CyDAS: a cytogenetic data analysis system. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1282-1283 [Journal]
  64. Pawan Dhar, Tan Chee Meng, Sandeep Somani, Li Ye, Kishore R. Sakharkar, Arun Krishnan, Azmi B. M. Ridwan, Sebastian Ho Kok Wah, Mandar Chitre, Hao Zhu
    Grid Cellware: the first grid-enabled tool for modelling and simulating cellular processes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1284-1287 [Journal]
  65. Chung-Yen Lin, Chia-Ling Chen, Chi-Shiang Cho, Li-Ming Wang, Chia-Ming Chang, Pao-Yang Chen, Chen-Zen Lo, Chao A. Hsiung
    hp-DPI: Helicobacter pylori Database of Protein Interactomes-embracing experimental and inferred interactions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1288-1290 [Journal]
  66. Joachim Reichelt, Guido Dieterich, Marsel Kvesic, Dietmar Schomburg, Dirk W. Heinz
    BRAGI: linking and visualization of database information in a 3D viewer and modeling tool. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1291-1293 [Journal]
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