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Journals in DBLP

Bioinformatics
2007, volume: 23, number: 2


  1. ECCB 2006. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:1-2 [Journal]

  2. ECCB 2006 Organization. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:3-4 [Journal]
  3. Sebastian Böcker
    Simulating multiplexed SNP discovery rates using base-specific cleavage and mass spectrometry. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:5-12 [Journal]
  4. Yanay Ofran, Burkhard Rost
    ISIS: interaction sites identified from sequence. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:13-16 [Journal]
  5. Huzefa Rangwala, George Karypis
    Incremental window-based protein sequence alignment algorithms. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:17-23 [Journal]
  6. Ariel S. Schwartz, Lior Pachter
    Multiple alignment by sequence annealing. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:24-29 [Journal]
  7. Dina Sokol, Gary Benson, Justin Tojeira
    Tandem repeats over the edit distance. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:30-35 [Journal]
  8. Yanni Sun, Jeremy Buhler
    Designing patterns for profile HMM search. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:42-43 [Journal]
  9. Abha Singh Bais, Steffen Grossmann, Martin Vingron
    Simultaneous alignment and annotation of cis-regulatory regions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:44-49 [Journal]
  10. Thomas Faraut, Simon de Givry, Patrick Chabrier, Thomas Derrien, Francis Galibert, Christophe Hitte, Thomas Schiex
    A comparative genome approach to marker ordering. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:50-56 [Journal]
  11. Matan Gavish, Amnon Peled, Benny Chor
    Genetic code symmetry and efficient design of GC-constrained coding sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:57-63 [Journal]
  12. Filip Hermans, Elena Tsiporkova
    Merging microarray cell synchronization experiments through curve alignment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:64-70 [Journal]
  13. Macha Nikolski, David James Sherman
    Family relationships: should consensus reign? - consensus clustering for protein families. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:71-76 [Journal]
  14. Doron Lipson, Zohar Yakhini, Yonatan Aumann
    Optimization of probe coverage for high-resolution oligonucleotide aCGH. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:77-83 [Journal]
  15. Chun Ye, Eleazar Eskin
    Discovering tightly regulated and differentially expressed gene sets in whole genome expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:84-90 [Journal]
  16. Nir Yosef, Zohar Yakhini, Anya Tsalenko, Vessela Kristensen, Anne-Lise Børresen-Dale, Eytan Ruppin, Roded Sharan
    A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:91-98 [Journal]
  17. Andreas Hildebrandt, Ralf Blossey, Sergej Rjasanow, Oliver Kohlbacher, Hans-Peter Lenhof
    Electrostatic potentials of proteins in water: a structured continuum approach. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:99-103 [Journal]
  18. Rafael Najmanovich, Abdellah Allali-Hassani, Richard J. Morris, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Aled M. Edwards, Cheryl H. Arrowsmith, Janet M. Thornton
    Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:104-109 [Journal]
  19. José Carlos Clemente, Kenji Satou, Gabriel Valiente
    Phylogenetic reconstruction from non-genomic data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:110-115 [Journal]
  20. Pawel Górecki, Jerzy Tiuryn
    Inferring phylogeny from whole genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:116-122 [Journal]
  21. Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
    Efficient parsimony-based methods for phylogenetic network reconstruction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:123-128 [Journal]
  22. Matthias Bernt, Daniel Merkle, Martin Middendorf
    Using median sets for inferring phylogenetic trees. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:129-135 [Journal]
  23. Alfonso Valencia, Alex Bateman
    Editorial. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:133- [Journal]
  24. Helge G. Roider, Aditi Kanhere, Thomas Manke, Martin Vingron
    Predicting transcription factor affinities to DNA from a biophysical model. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:134-141 [Journal]
  25. Matan Ninio, Eyal Privman, Tal Pupko, Nir Friedman
    Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary rates. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:136-141 [Journal]
  26. Saharon Rosset
    Efficient inference on known phylogenetic trees using Poisson regression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:142-147 [Journal]
  27. Snorre A. Helvik, Ola R. Snøve Jr., Pål Sætrom
    Reliable prediction of Drosha processing sites improves microRNA gene prediction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:142-149 [Journal]
  28. Tomer Hertz, Chen Yanover
    Identifying HLA supertypes by learning distance functions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:148-155 [Journal]
  29. Richard J. Dixon, Ian C. Eperon, Nilesh J. Samani
    Complementary intron sequence motifs associated with human exon repetition: a role for intragenic, inter-transcript interactions in gene expression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:150-155 [Journal]
  30. Keith Noto, Mark Craven
    Learning probabilistic models of cis-regulatory modules that represent logical and spatial aspects. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:156-162 [Journal]
  31. Michael Farrar
    Striped Smith-Waterman speeds database searches six times over other SIMD implementations. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:156-161 [Journal]
  32. Xu Zhang, Tamer Kahveci
    QOMA: quasi-optimal multiple alignment of protein sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:162-168 [Journal]
  33. Barak Raveh, Ofer Rahat, Ronen Basri, Gideon Schreiber
    Rediscovering secondary structures as network motifs - an unsupervised learning approach. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:163-169 [Journal]
  34. Zhu Yang, John D. O'Brien, Xiaobin Zheng, Huaiqiu Zhu, Zhen-Su She
    Tree and rate estimation by local evaluation of heterochronous nucleotide data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:169-176 [Journal]
  35. Eitan Hirsh, Roded Sharan
    Identification of conserved protein complexes based on a model of protein network evolution. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:170-176 [Journal]
  36. Natasa Przulj
    Biological network comparison using graphlet degree distribution. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:177-183 [Journal]
  37. Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan
    In silico grouping of peptide/HLA class I complexes using structural interaction characteristics. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:177-183 [Journal]
  38. Oleg Rokhlenko, Ydo Wexler, Zohar Yakhini
    Similarities and differences of gene expression in yeast stress conditions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:184-190 [Journal]
  39. J. R. de Haan, Ron Wehrens, S. Bauerschmidt, E. Piek, René C. van Schaik, Lutgarde M. C. Buydens
    Interpretation of ANOVA models for microarray data using PCA. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:184-190 [Journal]
  40. Oliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Marc Sturm
    TOPP - the OpenMS proteomics pipeline. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:191-197 [Journal]
  41. Andreas W. Schreiber, Ute Baumann
    A framework for gene expression analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:191-197 [Journal]
  42. Peng Qiu, Z. Jane Wang, K. J. Ray Liu, Zhang-Zhi Hu, Cathy H. Wu
    Dependence network modeling for biomarker identification. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:198-206 [Journal]
  43. Jennifer Listgarten, Radford M. Neal, Sam T. Roweis, Peter Wong, Andrew Emili
    Difference detection in LC-MS data for protein biomarker discovery. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:198-204 [Journal]
  44. Fabian Birzele, Jan E. Gewehr, Gergely Csaba, Ralf Zimmer
    Vorolign - fast structural alignment using Voronoi contacts. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:205-211 [Journal]
  45. Feng Luo, Yunfeng Yang, Chin-Fu Chen, Roger Chang, Jizhong Zhou, Richard H. Scheuermann
    Modular organization of protein interaction networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:207-214 [Journal]
  46. Angela Enosh, Sarel J. Fleishman, Nir Ben-Tal, Dan Halperin
    Prediction and simulation of motion in pairs of transmembrane alpha-helices. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:212-218 [Journal]
  47. Xiaotu Ma, Hyunju Lee, Li Wang, Fengzhu Sun
    CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:215-221 [Journal]
  48. Iddo Friedberg, Tim Harder, Rachel Kolodny, Einat Sitbon, Zhanwen Li, Adam Godzik
    Using an alignment of fragment strings for comparing protein structures. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:219-224 [Journal]
  49. Ai Li, Steve Horvath
    Network neighborhood analysis with the multi-node topological overlap measure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:222-231 [Journal]
  50. Etai Jacob, Ron Unger
    A tale of two tails: why are terminal residues of proteins exposed? [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:225-230 [Journal]
  51. Annalisa Marsico, Dirk Labudde, K. Tanuj Sapra, Daniel J. Muller, Michael Schroeder
    A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:231-236 [Journal]
  52. Yuanyuan Tian, Richard C. McEachin, Carlos Santos, David J. States, Jignesh M. Patel
    SAGA: a subgraph matching tool for biological graphs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:232-239 [Journal]
  53. Dietrich Rebholz-Schuhmann, Harald Kirsch, Miguel Arregui, Sylvain Gaudan, Mark Riethoven, Peter Stoehr
    EBIMed - text crunching to gather facts for proteins from Medline. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:237-244 [Journal]
  54. Frank M. You, Ming-Cheng Luo, Yong Qiang Gu, Gerard R. Lazo, Karin Deal, Jan Dvorak, Olin D. Anderson
    GenoProfiler: batch processing of high-throughput capillary fingerprinting data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:240-242 [Journal]
  55. Nicolás Bellora, Domènec Farré, M. Mar Albà
    PEAKS: identification of regulatory motifs by their position in DNA sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:243-244 [Journal]
  56. Sinae Kim, Jerry Tsai, Ioannis Kagiampakis, Patricia LiWang, Marina Vannucci
    Detecting protein dissimilarities in multiple alignments using Bayesian variable selection. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:245-246 [Journal]
  57. R. Cathelin, F. Lopez, Ch. Klopp
    AGScan: a pluggable microarray image quantification software based on the ImageJ library. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:247-248 [Journal]
  58. Reagan J. Kelly, Douglas M. Jacobsen, Yan V. Sun, Jennifer A. Smith, Sharon L. R. Kardia
    KGraph: a system for visualizing and evaluating complex genetic associations. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:249-251 [Journal]
  59. K. Hao, X. Di, S. Cawley
    LdCompare: rapid computation of single- and multiple-marker r2 and genetic coverage. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:252-254 [Journal]
  60. Shaun Purcell, Mark J. Daly, Pak Chung Sham
    WHAP: haplotype-based association analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:255-256 [Journal]
  61. Seth Falcon, Robert Gentleman
    Using GOstats to test gene lists for GO term association. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:257-258 [Journal]
  62. Christopher S. Poultney, Rodrigo A. Gutiérrez, Manpreet S. Katari, Miriam L. Gifford, W. Bradford Paley, Gloria M. Coruzzi, Dennis Shasha Sungear
    Sungear: interactive visualization and functional analysis of genomic datasets. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:259-261 [Journal]
  63. J. A. Falkner, J. W. Falkner, P. C. Andrews
    ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:262-263 [Journal]
  64. Yuliya V. Karpievitch, Elizabeth G. Hill, Adam J. Smolka, Jeffrey S. Morris, Kevin R. Coombes, Keith A. Baggerly, Jonas S. Almeida
    PrepMS: TOF MS data graphical preprocessing tool. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:264-265 [Journal]

  65. CASPAR: a hierarchical Bayesian approach to predict survival times in cancer from gene expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:266- [Journal]
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