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Journals in DBLP

Nucleic Acids Research
2003, volume: 31, number: 13

  1. Krzysztof Ginalski, Leszek Rychlewski
    Detection of reliable and unexpected protein fold predictions using 3D-Jury. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3291-3292 [Journal]
  2. Phil Carter, Claus A. F. Andersen, Burkhard Rost
    DSSPcont: continuous secondary structure assignments for proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3293-3295 [Journal]
  3. Ling-Hong Hung, Ram Samudrala
    PROTINFO: secondary and tertiary protein structure prediction. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3296-3299 [Journal]
  4. Burkhard Rost, Jinfeng Liu
    The PredictProtein server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3300-3304 [Journal]
  5. Michal A. Kurowski, Janusz M. Bujnicki
    GeneSilico protein structure prediction meta-server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3305-3307 [Journal]
  6. Volker A. Eyrich, Burkhard Rost
    META-PP: single interface to crucial prediction servers. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3308-3310 [Journal]
  7. Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
    EVA: evaluation of protein structure prediction servers. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3311-3315 [Journal]
  8. Leigh Willard, Anuj Ranjan, Haiyan Zhang, Hassan Monzavi, Robert F. Boyko, Brian D. Sykes, David S. Wishart
    VADAR: a web server for quantitative evaluation of protein structure quality. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3316-3319 [Journal]
  9. Patrice Gouet, Xavier Robert, Emmanuel Courcelle
    ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3320-3323 [Journal]
  10. Mike P. Liang, D. Rey Banatao, Teri E. Klein, Douglas L. Brutlag, Russ B. Altman
    WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3324-3327 [Journal]
  11. Steven P. Bennett, Lin Lu, Douglas L. Brutlag
    3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3328-3332 [Journal]
  12. Anna Gaulton, Terri K. Attwood
    Motif3D: relating protein sequence motifs to 3D structure. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3333-3336 [Journal]
  13. Rajesh Nair, Burkhard Rost
    LOC3D: annotate sub-cellular localization for protein structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3337-3340 [Journal]
  14. Alexander Stark, Robert B. Russell
    Annotation in three dimensions. PINTS: Patterns in Non-homologous Tertiary Structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3341-3344 [Journal]
  15. M. Madan Babu
    NCI: a server to identify non-canonical interactions in protein structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3345-3348 [Journal]
  16. Razif R. Gabdoulline, Rebecca C. Wade, Dirk Walther
    MolSurfer: a macromolecular interface navigator. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3349-3351 [Journal]
  17. T. Andrew Binkowski, Shapor Naghibzadeh, Jie Liang
    CASTp: Computed Atlas of Surface Topography of proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3352-3355 [Journal]
  18. A. S. Z. Hussain, Ch. Kiran Kumar, C. K. Rajesh, S. S. Sheik, Krishna Sekar
    SEM (Symmetry Equivalent Molecules): a web-based GUI to generate and visualize the macromolecules. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3356-3358 [Journal]
  19. Zsuzsanna Dosztányi, Csaba Magyar, Gábor E. Tusnády, Miklós Cserzo, András Fiser, István Simon
    Servers for sequence-structure relationship analysis and prediction. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3359-3363 [Journal]
  20. Luigi Cavallo, Jens Kleinjung, Franca Fraternali
    POPS: a fast algorithm for solvent accessible surface areas at atomic and residue level. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3364-3366 [Journal]
  21. Takeshi Kawabata
    MATRAS: a program for protein 3D structure comparison. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3367-3369 [Journal]
  22. Adam Zemla
    LGA: a method for finding 3D similarities in protein structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3370-3374 [Journal]
  23. Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali
    Tools for comparative protein structure modeling and analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3375-3380 [Journal]
  24. Torsten Schwede, Jürgen Kopp, Nicolas Guex, Manuel C. Peitsch
    SWISS-MODEL: an automated protein homology-modeling server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3381-3385 [Journal]
  25. Goran Neshich, Roberto C. Togawa, Adauto L. Mancini, Paula R. Kuser, Michel E. B. Yamagishi, Georgios Joannis Pappas Jr., Wellington V. Torres, Tharsis Fonseca e Campos, Leonardo L. Ferreira, Fabio M. Luna, Adilton G. Oliveira, Ronald T. Miura, Marcus K. Inoue, Luiz G. Horita, Dimas F. de Souza, Fabiana Dominiquini, Alexandre Alvaro, Cleber S. Lima, Fabio O. Ogawa, Gabriel B. Gomes, Juliana F. Palandrani, Gabriela F. dos Santos, Esther M. de Freitas, Amanda R. Mattiuz, Ivan C. Costa, Celso L. de Almeida, Savio Souza, Christian Baudet, Roberto H. Higa
    STING Millennium: a web-based suite of programs for comprehensive and simultaneous analysis of protein structure and sequence. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3386-3392 [Journal]
  26. Guy Perrière, Christophe Combet, Simon Penel, Christophe Blanchet, Jean Thioulouse, Christophe Geourjon, Julien Grassot, Céline Charavay, Manolo Gouy, Laurent Duret, Gilbert Deléage
    Integrated databanks access and sequence/structure analysis services at the PBIL. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3393-3399 [Journal]
  27. Emmanuel Bettler, Roland Krause, Florence Horn, Gert Vriend
    NRSAS: Nuclear Receptor Structure Analysis Servers. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3400-3403 [Journal]
  28. V. Shanthi, P. Selvarani, Ch. Kiran Kumar, C. S. Mohire, Krishna Sekar
    SSEP: secondary structural elements of proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3404-3405 [Journal]
  29. Michael Zuker
    Mfold web server for nucleic acid folding and hybridization prediction. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3406-3415 [Journal]
  30. Mirela Andronescu, Rosalía Aguirre-Hernández, Anne Condon, Holger H. Hoos
    RNAsoft: a suite of RNA secondary structure prediction and design software tools. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3416-3422 [Journal]
  31. Bjarne Knudsen, Jotun Hein
    Pfold: RNA secondary structure prediction using stochastic context-free grammars. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3423-3428 [Journal]
  32. Ivo L. Hofacker
    Vienna RNA secondary structure server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3429-3431 [Journal]
  33. Kyungsook Han, Yanga Byun
    PSEUDOVIEWER2: visualization of RNA pseudoknots of any type. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3432-3440 [Journal]
  34. Peter Bengert, Thomas Dandekar
    A software tool-box for analysis of regulatory RNA elements. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3441-3445 [Journal]
  35. Yuh-Jyh Hu
    GPRM: a genetic programming approach to finding common RNA secondary structure elements. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3446-3449 [Journal]
  36. Huanwang Yang, Fabrice Jossinet, Neocles Leontis, Li Chen, John D. Westbrook, Helen M. Berman, Eric Westhof
    Tools for the automatic identification and classification of RNA base pairs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3450-3460 [Journal]
  37. Javier Herrero, Fátima Al-Shahrour, Ramón Díaz-Uriarte, Álvaro Mateos, Juan M. Vaquerizas, Javier Santoyo, Joaquín Dopazo
    GEPAS: a web-based resource for microarray gene expression data analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3461-3467 [Journal]
  38. Bert Coessens, Gert Thijs, Stein Aerts, Kathleen Marchal, Frank De Smet, Kristof Engelen, Patrick Glenisson, Yves Moreau, Janick Mathys, Bart De Moor
    INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3468-3470 [Journal]
  39. Steen Knudsen, Christopher T. Workman, Thomas Sicheritz-Ponten, Carsten Friis
    GenePublisher: automated analysis of DNA microarray data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3471-3476 [Journal]
  40. Nicholas M. Luscombe, Thomas E. Royce, Paul Bertone, Nathaniel Echols, Christine E. Horak, Joseph T. Chang, Michael Snyder, Mark Gerstein
    ExpressYourself: a modular platform for processing and visualizing microarray data [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3477-3482 [Journal]
  41. Sheng Zhong, Cheng Li, Wing Hung Wong
    ChipInfo: software for extracting gene annotation and gene ontology information for microarray analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3483-3486 [Journal]
  42. Crispin Roven, Harmen J. Bussemaker
    REDUCE: an online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3487-3490 [Journal]
  43. Henrik Bjørn Nielsen, Rasmus Wernersson, Steen Knudsen
    Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3491-3496 [Journal]
  44. Chenna Ramu, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez, Toby J. Gibson, Desmond G. Higgins, Julie Dawn Thompson
    Multiple sequence alignment with the Clustal series of programs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3497-3500 [Journal]
  45. Davinder K. Kohli, Anand K. Bachhawat
    CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3501-3502 [Journal]
  46. Olivier Poirot, Eamonn O'Toole, Cédric Notredame
    Tcoffee add igs: a web server for computing, evaluating and combining multiple sequence alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3503-3506 [Journal]
  47. Simon Cawley, Lior Pachter, Marina Alexandersson
    SLAM web server for comparative gene finding and alignment. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3507-3509 [Journal]
  48. Yvonne J. K. Edwards, Tim J. Carver, Tanya Vavouri, Martin C. Frith, Martin J. Bishop, Greg Elgar
    Theatre: a software tool for detailed comparative analysis and visualization of genomic sequence. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3510-3517 [Journal]
  49. Scott Schwartz, Laura Elnitski, Mei Li, Matthew Weirauch, Cathy Riemer, Arian Smit, Eric D. Green, Ross C. Hardison, Webb Miller
    MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3518-3524 [Journal]
  50. Nicolas Bray, Lior Pachter
    MAVID multiple alignment server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3525-3526 [Journal]
  51. Liliana Florea, Michael McClelland, Cathy Riemer, Scott Schwartz, Webb Miller
    EnteriX 2003: visualization tools for genome alignments of Enterobacteriaceae. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3527-3532 [Journal]
  52. Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan
    MGAlignIt: a web service for the alignment of mRNA/EST and genomic sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3533-3536 [Journal]
  53. Rasmus Wernersson, Anders Gorm Pedersen
    RevTrans: multiple alignment of coding DNA from aligned amino acid sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3537-3539 [Journal]
  54. Victor V. Solovyev, Ilham A. Shahmuradov
    PromH: promoters identification using orthologous genomic sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3540-3545 [Journal]
  55. Allen Chong, Guanglan Zhang, Vladimir B. Bajic
    FIE2: a program for the extraction of genomic DNA sequences around the start and translation initiation site of human genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3546-3553 [Journal]
  56. Anason S. Halees, Dmitriy Leyfer, Zhiping Weng
    PromoSer: a large-scale mammalian promoter and transcription start site identification service. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3554-3559 [Journal]
  57. Vladimir B. Bajic, Seng Hong Seah
    Dragon Gene Start Finder identifies approximate locations of the 5' ends of genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3560-3563 [Journal]
  58. Anton Nekrutenko, Wen-Yu Chung, Wen-Hsiung Li
    ETOPE: evolutionary test of predicted exons. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3564-3567 [Journal]
  59. Luca Cartegni, Jinhua Wang, Zhengwei Zhu, Michael Q. Zhang, Adrian R. Krainer
    ESEfinder: a web resource to identify exonic splicing enhancers. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3568-3571 [Journal]
  60. Paul E. Boardman, Stephen G. Oliver, Simon J. Hubbard
    SiteSeer: visualisation and analysis of transcription factor binding sites in nucleotide sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3572-3575 [Journal]
  61. Alexander E. Kel, Ellen Gößling, Ingmar Reuter, Evgeny Cheremushkin, Olga V. Kel-Margoulis, Edgar Wingender
    MATCHTM: a tool for searching transcription factor binding sites in DNA sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3576-3579 [Journal]
  62. William Thompson, Eric C. Rouchka, Charles E. Lawrence
    Gibbs Recursive Sampler: finding transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3580-3585 [Journal]
  63. Saurabh Sinha, Martin Tompa
    YMF: a program for discovery of novel transcription factor binding sites by statistical overrepresentation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3586-3588 [Journal]
  64. Alona Sosinsky, Christopher P. Bonin, Richard S. Mann, Barry Honig
    Target Explorer: an automated tool for the identification of new target genes for a specified set of transcription factors. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3589-3592 [Journal]
  65. Jacques van Helden
    Regulatory Sequence Analysis Tools. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3593-3596 [Journal]
  66. Shannon D. Schlueter, Qunfeng Dong, Volker Brendel
    GeneSeqer add PlantGDB: gene structure prediction in plant genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3597-3600 [Journal]
  67. William H. Majoros, Mihaela Pertea, Corina Antonescu, Steven Salzberg
    GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3601-3604 [Journal]
  68. Vladimir B. Bajic, Sin Lam Tan, Allen Chong, Suisheng Tang, Anders Ström, Jan-Åke Gustafsson, Chin-Yo Lin, Edison T. Liu
    Dragon ERE Finder version 2: a tool for accurate detection and analysis of estrogen response elements in vertebrate genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3605-3607 [Journal]
  69. Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Elisabetta Sbisà, Graziano Pesole
    PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3608-3612 [Journal]
  70. Jennifer L. Gardy, Cory Spencer, Ke Wang, Martin Ester, Gábor E. Tusnády, István Simon, Sujun Hua, Katalin de Fays, Christophe G. Lambert, Kenta Nakai, Fiona S. L. Brinkman
    PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3613-3617 [Journal]
  71. Giovanna Ambrosini, Viviane Praz, Vidhya Jagannathan, Philipp Bucher
    Signal search analysis server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3618-3620 [Journal]
  72. Pingping Guan, Irini A. Doytchinova, Christianna Zygouri, Darren R. Flower
    MHCPred: a server for quantitative prediction of peptide-MHC binding. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3621-3624 [Journal]
  73. Pål Puntervoll, Rune Linding, Christine Gemünd, Sophie Chabanis-Davidson, Morten Mattingsdal, Scott Cameron, David M. A. Martin, Gabriele Ausiello, Barbara Brannetti, Anna Costantini, Fabrizio Ferrè, Vincenza Maselli, Allegra Via, Gianni Cesareni, Francesca Diella, Giulio Superti-Furga, Lucjan Stanislaw Wyrwicz, Chenna Ramu, Caroline McGuigan, Rambabu Gudavalli, Ivica Letunic, Peer Bork, Leszek Rychlewski, Bernhard Küster, Manuela Helmer-Citterich, William N. Hunter, Rein Aasland, Toby J. Gibson
    ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3625-3630 [Journal]
  74. Frank Eisenhaber, Birgit Eisenhaber, Werner Kubina, Sebastian Maurer-Stroh, Georg Neuberger, Georg Schneider, Michael Wildpaner
    Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-, NMT and PTS1. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3631-3634 [Journal]
  75. John C. Obenauer, Lewis C. Cantley, Michael B. Yaffe
    Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3635-3641 [Journal]
  76. Andrew Kernytsky, Burkhard Rost
    Static benchmarking of membrane helix predictions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3642-3644 [Journal]
  77. Tien Huynh, Isidore Rigoutsos, Laxmi Parida, Daniel E. Platt, Tetsuo Shibuya
    The web server of IBM's Bioinformatics and Pattern Discovery group. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3645-3650 [Journal]
  78. Domènec Farré, Roman Roset, Mario Huerta, José E. Adsuara, Llorenç Roselló, M. Mar Albà, Xavier Messeguer
    Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3651-3653 [Journal]
  79. Gitanjali Yadav, Rajesh S. Gokhale, Debasisa Mohanty
    SEARCHPKS: a program for detection and analysis of polyketide synthase domains. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3654-3658 [Journal]
  80. Guojun Yang, Timothy C. Hall
    MAK, a computational tool kit for automated MITE analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3659-3665 [Journal]
  81. Martin C. Frith, Michael C. Li, Zhiping Weng
    Cluster-Buster: finding dense clusters of motifs in DNA sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3666-3668 [Journal]
  82. David Robelin, Hugues Richard, Bernard Prum
    SIC: a tool to detect short inverted segments in a biological sequence. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3669-3671 [Journal]
  83. Roman M. Kolpakov, Ghizlane Bana, Gregory Kucherov
    mreps: efficient and flexible detection of tandem repeats in DNA. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3672-3678 [Journal]
  84. Hugues Richard, Grégory Nuel
    SPA: simple web tool to assess statistical significance of DNA patterns. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3679-3681 [Journal]
  85. Moshe Gal, Tzvi Katz, Amir Ovadia, Gad Yagil
    TRACTS: a program to map oligopurine.oligopyrimidine and other binary DNA tracts. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3682-3685 [Journal]
  86. Kristian Vlahovicek, László Kaján, Sándor Pongor
    DNA analysis servers: plot.it, bend.it, model.it and IS. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3686-3687 [Journal]
  87. Tamas Vincze, Janos Posfai, Richard J. Roberts
    NEBcutter: a program to cleave DNA with restriction enzymes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3688-3691 [Journal]
  88. C. Z. Cai, L. Y. Han, Zhi Liang Ji, X. Chen, Y. Z. Chen
    SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3692-3697 [Journal]
  89. Paul D. Taylor, Terri K. Attwood, Darren R. Flower
    BPROMPT: a consensus server for membrane protein prediction. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3698-3700 [Journal]
  90. Rune Linding, Robert B. Russell, Victor Neduva, Toby J. Gibson
    GlobPlot: exploring protein sequences for globularity and disorder. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3701-3708 [Journal]
  91. Barbara Brannetti, Manuela Helmer-Citterich
    iSPOT: a web tool to infer the interaction specificity of families of protein modules. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3709-3711 [Journal]
  92. Steffen Hennig, Detlef Groth, Hans Lehrach
    Automated Gene Ontology annotation for anonymous sequence data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3712-3715 [Journal]
  93. Agnes Hotz-Wagenblatt, Thomas Hankeln, Peter Ernst, Karl-Heinz Glatting, Erwin R. Schmidt, Sándor Suhai
    ESTAnnotator: a tool for high throughput EST annotation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3716-3719 [Journal]
  94. François Enault, Karsten Suhre, Olivier Poirot, Chantal Abergel, Jean-Michel Claverie
    Phydbac (phylogenomic display of bacterial genes): an interactive resource for the annotation of bacterial genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3720-3722 [Journal]
  95. Stéphanie Bocs, Stéphane Cruveiller, David Vallenet, Grégory Nuel, Claudine Médigue
    AMIGene: Annotation of MIcrobial Genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3723-3726 [Journal]
  96. Hideaki Sugawara, Satoru Miyazaki
    AHMII: Agent to Help Microbial Information Integration. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3727-3728 [Journal]
  97. Chunyu Liu, Tom I. Bonner, Tu H. Nguyen, Jennifer L. Lyons, Susan L. Christian, Elliot S. Gershon
    DNannotator: annotation software tool kit for regional genomic sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3729-3735 [Journal]
  98. Jason McDermott, Ram Samudrala
    Bioverse: functional, structural and contextual annotation of proteins and proteomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3736-3737 [Journal]
  99. Thomas Schiex, Jérôme Gouzy, Annick Moisan, Yannick de Oliveira
    FrameD: a flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3738-3741 [Journal]
  100. Sylvain Foissac, Philippe Bardou, Annick Moisan, Marie-Josée Cros, Thomas Schiex
    EUGÈNE'HOM: a generic similarity-based gene finder using multiple homologous sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3742-3745 [Journal]
  101. Scott J. Emrich, Mary Lowe, Arthur L. Delcher
    PROBEmer: a web-based software tool for selecting optimal DNA oligos. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3746-3750 [Journal]
  102. S. H. Chen, C. Y. Lin, C. S. Cho, C. Z. Lo, C. A. Hsiung
    Primer Design Assistant (PDA): a web-based primer design tool. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3751-3754 [Journal]
  103. Guoqing Lu, Michael T. Hallett, Stephanie Pollock, David Thomas
    DePIE: Designing Primers for Protein Interaction Experiments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3755-3757 [Journal]
  104. Niels Tolstrup, Peter S. Nielsen, Jens G. Kolberg, Annett M. Frankel, Henrik Vissing, Sakari Kauppinen
    OligoDesign: optimal design of LNA (locked nucleic acid) oligonucleotide capture probes for gene expression profiling. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3758-3762 [Journal]
  105. Timothy Rose, Jorja G. Henikoff, Steven Henikoff
    CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3763-3766 [Journal]
  106. Alexander Sczyrba, Jan Krüger, Henning Mersch, Stefan Kurtz, Robert Giegerich
    RNA-related tools on the Bielefeld Bioinformatics Server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3767-3770 [Journal]
  107. Chenna Ramu
    SIRW: a web server for the Simple Indexing and Retrieval System that combines sequence motif searches with keyword searches. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3771-3774 [Journal]
  108. Sorin Draghici, Purvesh Khatri, Pratik Bhavsar, Abhik Shah, Stephen A. Krawetz, Michael A. Tainsky
    Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3775-3781 [Journal]
  109. Laurent Falquet, Lorenza Bordoli, Vassilios Ioannidis, Marco Pagni, C. Victor Jongeneel
    Swiss EMBnet node web server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3782-3783 [Journal]
  110. Elisabeth Gasteiger, Alexandre Gattiker, Christine Hoogland, Ivan Ivanyi, Ron D. Appel, Amos Bairoch
    ExPASy: the proteomics server for in-depth protein knowledge and analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3784-3788 [Journal]
  111. Sven Mika, Burkhard Rost
    UniqueProt: creating representative protein sequence sets. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3789-3791 [Journal]
  112. Konstantinos Bimpikis, Aidan Budd, Rune Linding, Toby J. Gibson
    BLAST2SRS, a web server for flexible retrieval of related protein sequences in the SWISS-PROT and SPTrEMBL databases. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3792-3794 [Journal]
  113. Rodrigo Lopez, Ville Silventoinen, Stephen Robinson, Asif Kibria, Warren Gish
    WU-Blast2 server at the European Bioinformatics Institute. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3795-3798 [Journal]
  114. Günther Zehetner
    OntoBlast function: from sequence similarities directly to potential functional annotations by ontology terms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3799-3803 [Journal]
  115. Krzysztof Ginalski, Jakub Pas, Lucjan Stanislaw Wyrwicz, Marcin von Grotthuss, Janusz M. Bujnicki, Leszek Rychlewski
    ORFeus: detection of distant homology using sequence profiles and predicted secondary structure. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3804-3807 [Journal]
  116. Nicholas E. Taylor, Elizabeth A. Greene
    PARSESNP: a tool for the analysis of nucleotide polymorphisms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3808-3811 [Journal]
  117. Pauline C. Ng, Steven Henikoff
    SIFT: predicting amino acid changes that affect protein function. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3812-3814 [Journal]
  118. Guillaume Albini, Matthieu Falque, Johann Joets
    ActionMap: a web-based software that automates loci assignments to framework maps. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3815-3818 [Journal]
  119. Yanlin Huang, David Kowalski
    WEB-THERMODYN: sequence analysis software for profiling DNA helical stability. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3819-3821 [Journal]
  120. I. Q. H. Phan, Sandrine Pilbout, Wolfgang Fleischmann, Amos Bairoch
    NEWT, a new taxonomy portal. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3822-3823 [Journal]
  121. Michal Lapidot, Yitzhak Pilpel
    Comprehensive quantitative analyses of the effects of promoter sequence elements on mRNA transcription. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3824-3828 [Journal]
  122. Frédéric Plewniak, Laurent Bianchetti, Yann Brelivet, Annaick Carles, Frédéric Chalmel, Odile Lecompte, Thiebaut Mochel, Luc Moulinier, Arnaud Muller, Jean Muller, Veronique Prigent, Raymond Ripp, Jean-Claude Thierry, Julie Dawn Thompson, Nicolas Wicker, Olivier Poch
    PipeAlign: a new toolkit for protein family analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3829-3832 [Journal]
  123. Jinfeng Liu, Burkhard Rost
    NORSp: predictions of long regions without regular secondary structure. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3833-3835 [Journal]
  124. Hideaki Sugawara, Satoru Miyazaki
    Biological SOAP servers and web services provided by the public sequence data bank. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3836-3839 [Journal]
  125. Mathieu Blanchette, Martin Tompa
    FootPrinter: a program designed for phylogenetic footprinting. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3840-3842 [Journal]
  126. Edouard Yeramian, Louis Jones
    GeneFizz: a web tool to compare genetic (coding/non-coding) and physical (helix/coil) segmentations of DNA sequences. Gene discovery and evolutionary perspectives. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3843-3849 [Journal]
  127. Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter
    Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3850-3855 [Journal]
  128. Lucy Skrabanek, Fabien Campagne, Harel Weinstein
    Building protein diagrams on the web with the residue-based diagram editor RbDe. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3856-3858 [Journal]
  129. Aaron J. Mackey, Timothy A. J. Haystead, William R. Pearson
    CRP: Cleavage of Radiolabeled Phosphoproteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3859-3861 [Journal]
  130. Karsten Hiller, Max Schobert, Claudia Hundertmark, Dieter Jahn, Richard Münch
    JVirGel: calculation of virtual two-dimensional protein gels. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3862-3865 [Journal]
  131. Carolina Perez-Iratxeta, Antonio Jesús Pérez, Peer Bork, Miguel A. Andrade
    Update on XplorMed: a web server for exploring scientific literature. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3866-3868 [Journal]
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