Journals in DBLP
Editorial. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:1- [Journal ] Joanne A. Fox , Stefanie L. Butland , Scott McMillan , Graeme Campbell , B. F. Francis Ouellette The Bioinformatics Links Directory: a Compilation of Molecular Biology Web Servers. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:3-24 [Journal ] Sharmila Pillai , Ville Silventoinen , Kimmo Kallio , M. Senger , Siamak Sobhany , John G. Tate , Samir S. Velankar , Adel Golovin , Kim Henrick , P. Rice , Peter Stoehr , Rodrigo Lopez SOAP-based services provided by the European Bioinformatics Institute. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:25-28 [Journal ] Goran Neshich , Luiz C. Borro , Roberto H. Higa , Paula R. Kuser , Michel E. B. Yamagishi , Eduardo H. Franco , João N. Krauchenco , Renato Fileto , André A. Ribeiro , George B. P. Bezerra , Thiago M. Velludo , Tomás S. Jimenez , Noboru Furukawa , Hirofumi Teshima , Koji Kitajima , K. Abdulla Bava , Akinori Sarai , Roberto C. Togawa , Adauto L. Mancini The Diamond STING server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:29-35 [Journal ] Kevin Bryson , Liam J. McGuffin , Russell L. Marsden , Jonathan J. Ward , Jaspreet Singh Sodhi , David T. Jones Protein structure prediction servers at University College London. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:36-38 [Journal ] Vladimir Sobolev , Eran Eyal , Sergey Gerzon , Vladimir Potapov , Mariana Babor , Jaime Prilusky , Marvin Edelman SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:39-43 [Journal ] C. Alland , F. Moreews , D. Boens , M. Carpentier , S. Chiusa , M. Lonquety , N. Renault , Y. Wong , H. Cantalloube , J. Chomilier , J. Hochez , J. Pothier , B. O. Villoutreix , J. F. Zagury , P. Tufféry RPBS: a web resource for structural bioinformatics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:44-49 [Journal ] Alessandro Paiardini , Francesco Bossa , Stefano Pascarella CAMPO, SCR_FIND and CHC_FIND: a suite of web tools for computational structural biology. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:50-55 [Journal ] Gabriela G. Loots , Ivan Ovcharenko Dcode.org anthology of comparative genomic tools. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:56-64 [Journal ] Jérôme Gracy , Laurent Chiche PAT: a protein analysis toolkit for integrated biocomputing on the web. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:65-71 [Journal ] Jianlin Cheng , Arlo Z. Randall , Michael J. Sweredoski , Pierre Baldi SCRATCH: a protein structure and structural feature prediction server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:72-76 [Journal ] Ling-Hong Hung , Shing-Chung Ngan , Tianyun Liu , Ram Samudrala PROTINFO: new algorithms for enhanced protein structure predictions. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:77-80 [Journal ] Ori Sasson , Michal Linial ProTarget: automatic prediction of protein structure novelty. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:81-84 [Journal ] P. Ananthalakshmi , Ch. Kiran Kumar , M. Jeyasimhan , K. Sumathi , Krishna Sekar Fragment Finder: a web-based software to identify similar three-dimensional structural motif. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:85-88 [Journal ] Roman A. Laskowski , James D. Watson , Janet M. Thornton ProFunc: a server for predicting protein function from 3D structure. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:89-93 [Journal ] Guoli Wang , Roland L. Dunbrack Jr. PISCES: recent improvements to a PDB sequence culling server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:94-98 [Journal ] Vladimir A. Ivanisenko , Alexey M. Eroshkin , Nikolay A. Kolchanov WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:99-104 [Journal ] Dan Xie , Ao Li , Minghui Wang , Zhewen Fan , Huanqing Feng LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:105-110 [Journal ] Adam Zemla , Carol Ecale Zhou , Tom Slezak , Tom Kuczmarski , D. Rama , Clinton Torres , D. Sawicka , Daniel Barsky AS2TS system for protein structure modeling and analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:111-115 [Journal ] Emmanuel Quevillon , Ville Silventoinen , Sharmila Pillai , Nicola Harte , Nicola J. Mulder , Rolf Apweiler , Rodrigo Lopez InterProScan: protein domains identifier. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:116-120 [Journal ] Maria Novatchkova , Michael Wildpaner , Dieter Schweizer , Frank Eisenhaber PhyloDome - visualization of taxonomic distributions of domains occurring in eukaryote protein sequence sets. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:121-125 [Journal ] O. Krishnadev , N. Rekha , Shashi B. Pandit , S. Abhiman , S. Mohanty , L. S. Swapna , S. Gore , Narayanaswamy Srinivasan PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:126-129 [Journal ] Ganesan Pugalenthi , Govindaraju Archunan , Ramanathan Sowdhamini DIAL: a web-based server for the automatic identification of structural domains in proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:130-132 [Journal ] Gabriele Ausiello , Andreas Zanzoni , Daniele Peluso , Allegra Via , Manuela Helmer-Citterich pdbFun: mass selection and fast comparison of annotated PDB residues. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:133-137 [Journal ] Pedro A. Reche , Ellis L. Reinherz PEPVAC: a web server for multi-epitope vaccine development based on the prediction of supertypic MHC ligands. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:138-142 [Journal ] Manoj Bhasin , G. P. S. Raghava GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:143-147 [Journal ] Yukimitsu Yabuki , Takahiko Muramatsu , Takatsugu Hirokawa , Hidehito Mukai , Makiko Suwa GRIFFIN: a system for predicting GPCR-G-protein coupling selectivity using a support vector machine and a hidden Markov model. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:148-153 [Journal ] Manish Kumar , Manoj Bhasin , Navjot K. Natt , G. P. S. Raghava BhairPred: prediction of ß-hairpins in a protein from multiple alignment information using ANN and SVM techniques. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:154-159 [Journal ] Richard A. George , Kuang Lin , Jaap Heringa Scooby-domain: prediction of globular domains in protein sequence. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:160-163 [Journal ] M. Michael Gromiha , Shandar Ahmad , Makiko Suwa TMBETA-NET: discrimination and prediction of membrane spanning ß-strands in outer membrane proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:164-167 [Journal ] Urmila Kulkarni-Kale , Shriram Bhosle , Ashok S. Kolaskar CEP: a conformational epitope prediction server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:168-171 [Journal ] Guanglan Zhang , Asif M. Khan , Kellathur N. Srinivasan , J. Thomas August , Vladimir Brusic MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:172-179 [Journal ] Guanglan Zhang , Kellathur N. Srinivasan , Anitha Veeramani , J. Thomas August , Vladimir Brusic PREDBALB/c : a system for the prediction of peptide binding to H2d molecules, a haplotype of the BALB/c mouse. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:180-183 [Journal ] Yu Xue , Fengfeng Zhou , Minjie Zhu , Kashif Ahmed , Guoliang Chen , Xuebiao Yao GPS: a comprehensive www server for phosphorylation sites prediction. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:184-187 [Journal ] Andrew G. Garrow , Alison Agnew , David R. Westhead TMB-Hunt: a web server to screen sequence sets for transmembrane ß-barrel proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:188-192 [Journal ] Hongyi Zhou , Chi Zhang , Song Liu , Yaoqi Zhou Web-based toolkits for topology prediction of transmembrane helical proteins, fold recognition, structure and binding scoring, folding-kinetics analysis and comparative analysis of domain combinations. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:193-197 [Journal ] Piero Fariselli , Michele Finelli , Ivan Rossi , Mauro Amico , Andrea Zauli , Pier Luigi Martelli , Rita Casadio TRAMPLE: the transmembrane protein labelling environment. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:198-201 [Journal ] Manoj Bhasin , G. P. S. Raghava Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:202-207 [Journal ] Christina Backes , Jan Kuentzer , Hans-Peter Lenhof , Nicole Comtesse , Eckart Meese GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:208-213 [Journal ] Andreas Bohne-Lang , Claus-Wilhelm von der Lieth GlyProt: in silico glycosylation of proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:214-219 [Journal ] Pankaj Kamra , Rajesh S. Gokhale , Debasisa Mohanty SEARCHGTr: a program for analysis of glycosyltransferases involved in glycosylation of secondary metabolites. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:220-225 [Journal ] Hsien-Da Huang , Tzong-Yi Lee , Shih-Wei Tzeng , Jorng-Tzong Horng KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:226-229 [Journal ] F. Ferrè , P. Clote DiANNA: a web server for disulfide connectivity prediction. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:230-232 [Journal ] Darby Tien-Hau Chang , Yen-Jen Oyang , Jung-Hsin Lin MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:233-238 [Journal ] Markus Gruber , Johannes Söding , Andrei N. Lupas REPPER - repeats and their periodicities in fibrous proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:239-243 [Journal ] Johannes Söding , Andreas Biegert , Andrei N. Lupas The HHpred interactive server for protein homology detection and structure prediction. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:244-248 [Journal ] Iddo Friedberg , Adam Godzik Fragnostic: walking through protein structure space. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:249-251 [Journal ] Kristian Vlahovicek , Alessandro Pintar , Laavanya Parthasarathi , Oliviero Carugo , Sándor Pongor CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:252-254 [Journal ] Roee Gutman , Carine Berezin , Roy Wollman , Yossi Rosenberg , Nir Ben-Tal QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:255-261 [Journal ] Thomas Yan , Danny Yoo , Tanya Z. Berardini , Lukas A. Mueller , Dan C. Weems , Shuai Weng , J. Michael Cherry , Seung Yon Rhee PatMatch: a program for finding patterns in peptide and nucleotide sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:262-266 [Journal ] David La , Dennis R. Livesay MINER: software for phylogenetic motif identification. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:267-270 [Journal ] Stefan Roepcke , Petko Fiziev , P. H. Seeburg , Martin Vingron SVC: structured visualization of evolutionary sequence conservation. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:271-273 [Journal ] Saikat Chakrabarti , Prem A. Anand , Nitin Bhardwaj , Ganesan Pugalenthi , Ramanathan Sowdhamini SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:274-276 [Journal ] Iris Bahir , Michal Linial ProTeus: identifying signatures in protein termini. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:277-280 [Journal ] Milana Frenkel-Morgenstern , Alice Singer , Hagit Bronfeld , Shmuel Pietrokovski One-Block CYRCA: an automated procedure for identifying multiple-block alignments from single block queries. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:281-283 [Journal ] Lukasz Jaroszewski , Leszek Rychlewski , Zhanwen Li , Weizhong Li , Adam Godzik FFAS03: a server for profile-profile sequence alignments. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:284-288 [Journal ] Victor A. Simossis , Jaap Heringa PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:289-294 [Journal ] Can Alkan , Eray Tüzün , Jerome Buard , Franck Lethiec , Evan E. Eichler , Jeffrey A. Bailey , Süleyman Cenk Sahinalp Manipulating multiple sequence alignments via MaM and WebMaM. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:295-298 [Journal ] Meytal Landau , Itay Mayrose , Yossi Rosenberg , Fabian Glaser , Eric Martz , Tal Pupko , Nir Ben-Tal ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:299-302 [Journal ] Csaba Magyar , M. Michael Gromiha , Gerard Pujadas , Gábor E. Tusnády , István Simon SRide: a server for identifying stabilizing residues in proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:303-305 [Journal ] Emidio Capriotti , Piero Fariselli , Rita Casadio I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:306-310 [Journal ] Jessica Dantzer , Charles Moad , Randy Heiland , Sean Mooney MutDB services: interactive structural analysis of mutation data. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:311-314 [Journal ] William C. Ray MAVL/StickWRLD for protein: visualizing protein sequence families to detect non-consensus features. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:315-319 [Journal ] Cédric Binisti , Ahmed Ali Salim , Pierre Tufféry PPG: online generation of protein pictures and animations. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:320-323 [Journal ] Jason McDermott , Michal Guerquin , Zachary Frazier , Aaron N. Chang , Ram Samudrala BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:324-325 [Journal ] Didier Croes , Fabian Couche , Shoshana J. Wodak , Jacques van Helden Metabolic PathFinding: inferring relevant pathways in biochemical networks. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:326-330 [Journal ] Utkan Ogmen , Ozlem Keskin , A. Selim Aytuna , Ruth Nussinov , Attila Gürsoy PRISM: protein interactions by structural matching. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:331-336 [Journal ] Alexandra Shulman-Peleg , Ruth Nussinov , Haim J. Wolfson SiteEngines: recognition and comparison of binding sites and protein-protein interfaces. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:337-341 [Journal ] Jens Kleinjung , Franca Fraternali POPSCOMP: an automated interaction analysis of biomolecular complexes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:342-346 [Journal ] Osvaldo Graña , Volker A. Eyrich , Florencio Pazos , Burkhard Rost , Alfonso Valencia EVAcon: a protein contact prediction evaluation service. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:347-351 [Journal ] Zhenjun Hu , Joe Mellor , Jie Wu , Takuji Yamada , Dustin Holloway , Charles DeLisi VisANT: data-integrating visual framework for biological networks and modules. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:352-357 [Journal ] Rajarshi Maiti , Gary H. Van Domselaar , David S. Wishart MovieMaker: a web server for rapid rendering of protein motions and interactions. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:358-362 [Journal ] Dina Schneidman-Duhovny , Yuval Inbar , Ruth Nussinov , Haim J. Wolfson PatchDock and SymmDock: servers for rigid and symmetric docking. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:363-367 [Journal ] John C. Gordon , Jonathan B. Myers , Timothy Folta , Valia Shoja , Lenwood S. Heath , Alexey Onufriev H++: a server for estimating pK a s and adding missing hydrogens to macromolecules. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:368-371 [Journal ] Maria A. Miteva , Pierre Tufféry , Bruno O. Villoutreix PCE: web tools to compute protein continuum electrostatics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:372-375 [Journal ] Brian D. Halligan , Victor Ruotti , Simon N. Twigger , Andrew S. Greene DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:376-381 [Journal ] Joost Schymkowitz , Jesper Borg , Francois Stricher , Robby Nys , Frederic Rousseau , Luis Serrano The FoldX web server: an online force field. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:382-388 [Journal ] Christopher T. Workman , Yutong Yin , David L. Corcoran , Trey Ideker , Gary D. Stormo , Panayiotis V. Benos enoLOGOS: a versatile web tool for energy normalized sequence logos. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:389-392 [Journal ] Stein Aerts , Peter Van Loo , Gert Thijs , Herbert Mayer , Rainer de Martin , Yves Moreau , Bart De Moor TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:393-396 [Journal ] Nils Ole Steffens , Claudia Galuschka , Martin Schindler , Lorenz Bülow , Reinhard Hehl AthaMap web tools for database-assisted identification of combinatorial cis -regulatory elements and the display of highly conserved transcription factor binding sites in Arabidopsis thaliana . [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:397-402 [Journal ] Ivan Ovcharenko , Marcelo A. Nobrega Identifying synonymous regulatory elements in vertebrate genomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:403-407 [Journal ] Anil G. Jegga , Ashima Gupta , Sivakumar Gowrisankar , Mrunal A. Deshmukh , Steven Connolly , Kevin Finley , Bruce J. Aronow CisMols Analyzer: identification of compositionally similar cis -element clusters in ortholog conserved regions of coordinately expressed genes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:408-411 [Journal ] Guandong Wang , Taotao Yu , Weixiong Zhang WordSpy: identifying transcription factor binding motifs by building a dictionary and learning a grammar. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:412-416 [Journal ] Oleg V. Vishnevsky , Nikolay A. Kolchanov ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:417-422 [Journal ] Alessandro Di Cara , Karsten Schmidt 0003 , Brian A. Hemmings , Edward J. Oakeley PromoterPlot: a graphical display of promoter similarities by pattern recognition. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:423-426 [Journal ] Matti Kankainen , Liisa Holm POCO: discovery of regulatory patterns from promoters of oppositely expressed gene sets. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:427-431 [Journal ] D. S. Chekmenev , C. Haid , A. E. Kel P-Match: transcription factor binding site search by combining patterns and weight matrices. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:432-437 [Journal ] Stefan Roepcke , Steffen Grossmann , Sven Rahmann , Martin Vingron T-Reg Comparator: an analysis tool for the comparison of position weight matrices. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:438-441 [Journal ] David L. Corcoran , Eleanor Feingold , Panayiotis V. Benos FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:442-446 [Journal ] Eugene Berezikov , Victor Guryev , Edwin Cuppen CONREAL web server: identification and visualization of conserved transcription factor binding sites. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:447-450 [Journal ] John Besemer , Mark Borodovsky GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:451-454 [Journal ] Gary H. Van Domselaar , Paul Stothard , Savita Shrivastava , Joseph A. Cruz , Anchi Guo , Xiaoli Dong , Paul Lu , Duane Szafron , Russell Greiner , David S. Wishart BASys: a web server for automated bacterial genome annotation. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:455-459 [Journal ] Fátima Al-Shahrour , Pablo Minguez , Juan M. Vaquerizas , Lucía Conde , Joaquín Dopazo BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:460-464 [Journal ] Mario Stanke , Burkhard Morgenstern AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:465-467 [Journal ] Páll Ísólfur Ólason Integrating protein annotation resources through the Distributed Annotation System. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:468-470 [Journal ] Stéphane Cruveiller , Jérôme Le Saux , David Vallenet , Aurélie Lajus , Stéphanie Bocs , Claudine Médigue MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:471-479 [Journal ] Lei Bao , Mi Zhou , Yan Cui nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:480-482 [Journal ] Jinho Yoo , Bonghee Seo , Yangseok Kim SNPAnalyzer: a web-based integrated workbench for single-nucleotide polymorphism analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:483-488 [Journal ] Ruifang Zhang , Zanhua Zhu , Hongming Zhu , Tu Nguyen , Fengxia Yao , Kun Xia , Desheng Liang , Chunyu Liu SNP Cutter: a comprehensive tool for SNP PCR-RFLP assay design. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:489-492 [Journal ] David Savage , Jacqueline Batley , Timothy A. Erwin , Erica Logan , Christopher G. Love , Geraldine A. C. Lim , Emmanuel Mongin , Gary Barker , German C. Spangenberg , David Edwards SNPServer: a real-time SNP discovery tool. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:493-495 [Journal ] Matthias Klaften , Martin Hrabé de Angelis ARTS: a web-based tool for the set-up of high-throughput genome-wide mapping panels for the SNP genotyping of mouse mutants. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:496-500 [Journal ] Lucía Conde , Juan M. Vaquerizas , Carles Ferrer-Costa , Xavier de la Cruz , Modesto Orozco , Joaquín Dopazo PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:501-505 [Journal ] Eric W. Klee , Kyong Jin Shim , Michael A. Pickart , Stephen C. Ekker , Lynda B. M. Ellis AMOD: a morpholino oligonucleotide selection tool. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:506-511 [Journal ] Bernard Fertil , Matthieu Massin , Sylvain Lespinats , Caroline Devic , Philippe Dumee , Alain Giron GENSTYLE: exploration and analysis of DNA sequences with genomic signature. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:512-515 [Journal ] Jakob Fredslund , Leif Schauser , Lene H. Madsen , Niels Sandal , Jens Stougaard PriFi: using a multiple alignment of related sequences to find primers for amplification of homologs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:516-520 [Journal ] Roman Rydzanicz , X. Sharon Zhao , Philip E. Johnson Assembly PCR oligo maker: a tool for designing oligodeoxynucleotides for constructing long DNA molecules for RNA production. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:521-525 [Journal ] Andreas Grote , Karsten Hiller , Maurice Scheer , Richard Münch , Bernd Nörtemann , Dietmar C. Hempel , Dieter Jahn JCat: a novel tool to adapt codon usage of a target gene to its potential expression host. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:526-531 [Journal ] Dirk Pöhler , Nadine Werner , Rasmus Steinkamp , Burkhard Morgenstern Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:532-534 [Journal ] Per Eystein Sæbø , Sten Morten Andersen , Jon Myrseth , Jon K. Laerdahl , Torbjørn Rognes PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:535-539 [Journal ] Laurent Noé , Gregory Kucherov YASS: enhancing the sensitivity of DNA similarity search. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:540-543 [Journal ] John Rachlin , Chunming Ding , Charles Cantor , Simon Kasif MuPlex: multi-objective multiplex PCR assay design. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:544-547 [Journal ] Steven Ringquist , Christopher Pecoraro , Crystal M. S. Gilchrist , Alexis Styche , William A. Rudert , Panayiotis V. Benos , Massimo Trucco SOP3 v2: web-based selection of oligonucleotide primer trios for genotyping of human and mouse polymorphisms. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:548-552 [Journal ] Chung-Yen Lin , Fan-Kai Lin , Chieh Hua Lin , Li-Wei Lai , Hsiu-Jun Hsu , Shu-Hwa Chen , Chao A. Hsiung POWER: PhylOgenetic WEb Repeater - an integrated and user-optimized framework for biomolecular phylogenetic analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:553-556 [Journal ] Stéphane Guindon , Franck Lethiec , Patrice Duroux , Olivier Gascuel PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:557-559 [Journal ] Sacha A. F. T. van Hijum , Aldert L. Zomer , Oscar P. Kuipers , Jan Kok Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:560-566 [Journal ] Rasmus Wernersson FeatureExtract - extraction of sequence annotation made easy. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:567-569 [Journal ] Alejandro Panjkovich , Tomás Norambuena , Francisco Melo dnaMATE: a consensus melting temperature prediction server for short DNA sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:570-572 [Journal ] Eivind Tøstesen , Geir Ivar Jerstad , Eivind Hovig Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:573-576 [Journal ] Nicholas R. Markham , Michael Zuker DINAMelt web server for nucleic acid melting prediction. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:577-581 [Journal ] Zeynep Arziman , Thomas Horn , Michael Boutros E-RNAi: a web application to design optimized RNAi constructs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:582-588 [Journal ] Yuki Naito , Tomoyuki Yamada , Takahiro Matsumiya , Kumiko Ui-Tei , Kaoru Saigo , Shinichi Morishita dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:589-591 [Journal ] André Boorsma , Barrett C. Foat , Daniel Vis , Frans Klis , Harmen J. Bussemaker T-profiler: scoring the activity of predefined groups of genes using gene expression data. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:592-595 [Journal ] Chang-Jiun Wu , Simon Kasif GEMS: a web server for biclustering analysis of expression data. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:596-599 [Journal ] P. Clote RNALOSS: a web server for RNA locally optimal secondary structures. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:600-604 [Journal ] A. Xayaphoummine , T. Bucher , H. Isambert Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:605-610 [Journal ] Rasmus Wernersson , Henrik Bjørn Nielsen OligoWiz 2.0 - integrating sequence feature annotation into the design of microarray probes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:611-615 [Journal ] Juan M. Vaquerizas , Lucía Conde , Patricio Yankilevich , Amaya Cabezón , Pablo Minguez , Ramón Díaz-Uriarte , Fátima Al-Shahrour , Javier Herrero , Joaquín Dopazo GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:616-620 [Journal ] Hee-Joon Chung , Chan Hee Park , Mi Ryung Han , SeokHo Lee , Jung Hun Ohn , Jihoon Kim , Jihun Kim , Ju Han Kim ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:621-626 [Journal ] Albert Hsiao , Trey Ideker , Jerrold M. Olefsky , Shankar Subramaniam VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:627-632 [Journal ] Bernhard Mlecnik , Marcel Scheideler , Hubert Hackl , Jürgen Hartler , Fatima Sanchez-Cabo , Zlatko Trajanoski PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:633-637 [Journal ] Michael Psarros , Steffen Heber , Manuela Sick , Gnanasekaran Thoppae , Keith Harshman , Beate Sick RACE : Remote Analysis Computation for gene Expression data. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:638-643 [Journal ] Chiara Romualdi , Nicola Vitulo , Micky Del Favero , Gerolamo Lanfranchi MIDAW: a web tool for statistical analysis of microarray data. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:644-649 [Journal ] Jakob Hull Havgaard , Rune B. Lyngsø , Jan Gorodkin The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:650-653 [Journal ] Shobhit Gupta , Martin Vingron , Stefan A. Haas T-STAG: resource and web-interface for tissue-specific transcripts and genes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:654-658 [Journal ] Sachiyo Aburatani , Kousuke Goto , Shigeru Saito , Hiroyuki Toh , Katsuhisa Horimoto ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:659-664 [Journal ] Giovanni Lavorgna , Riccardo Triunfo , Federico Santoni , Ugo Orfanelli , Sara Noci , Alessandro Bulfone , Gianluigi Zanetti , Giorgio Casari AntiHunter 2.0: increased speed and sensitivity in searching BLAST output for EST antisense transcripts. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:665-668 [Journal ] Xiang Jia Min , Gregory Butler , Reginald Storms , Adrian Tsang TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:669-672 [Journal ] Xin Wu , Michael G. Walker , Jingchu Luo , Liping Wei GBA server: EST-based digital gene expression profiling. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:673-676 [Journal ] Xiang Jia Min , Gregory Butler , Reginald Storms , Adrian Tsang OrfPredictor: predicting protein-coding regions in EST-derived sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:677-680 [Journal ] Namshin Kim , Dajeong Lim , Sanghyuk Lee , Heebal Kim ASePCR: alternative splicing electronic RT-PCR in multiple tissues and organs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:681-685 [Journal ] Peter Schattner , Angela N. Brooks , Todd M. Lowe The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:686-689 [Journal ] Cei Abreu-Goodger , Enrique Merino RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:690-692 [Journal ] Jean Pylouster , Catherine Sénamaud-Beaufort , Tula Ester Saison-Behmoaras WEBSAGE: a web tool for visual analysis of differentially expressed human SAGE tags. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:693-695 [Journal ] Ventsislav Rusinov , Vesselin Baev , Ivan Nikiforov Minkov , Martin Tabler MicroInspector: a web tool for detection of miRNA binding sites in an RNA sequence. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:696-700 [Journal ] Yuanji Zhang miRU: an automated plant miRNA target prediction server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:701-704 [Journal ] Andreas Bohne-Lang , Wolf-Dieter Groch , René Ranzinger AISMIG - an interactive server-side molecule image generator. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:705-709 [Journal ] A. Goesmann , B. Linke , D. Bartels , M. Dondrup , L. Krause , H. Neuweger , S. Oehm , T. Paczian , A. Wilke , F. Meyer BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:710-716 [Journal ] Marco Masseroli , Osvaldo Galati , Francesco Pinciroli GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:717-723 [Journal ] Stephen Rudd , Igor V. Tetko Éclair - a web service for unravelling species origin of sequences sampled from mixed host interfaces. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:724-727 [Journal ] David M. Aanensen , Brian G. Spratt The multilocus sequence typing network: mlst.net. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:728-733 [Journal ] Tsute Chen , Kevin Abbey , Wen-jie Deng , Meng-chuan Cheng The bioinformatics resource for oral pathogens. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:734-740 [Journal ] Bing Zhang , Stefan Kirov , Jay Snoddy WebGestalt: an integrated system for exploring gene sets in various biological contexts. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:741-748 [Journal ] Peter Juvan , Janez Demsar , Gad Shaulsky , Blaz Zupan GenePath: from mutations to genetic networks and back. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:749-752 [Journal ] Taro L. Saito , Jun Sese , Yoichiro Nakatani , Fumi Sano , Masashi Yukawa , Yoshikazu Ohya , Shinichi Morishita Data mining tools for the Saccharomyces cerevisiae morphological database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:753-757 [Journal ] M. A. van Driel , K. Cuelenaere , P. P. C. W. Kemmeren , J. A. M. Leunissen , H. G. Brunner , Gert Vriend GeneSeeker: extraction and integration of human disease-related information from web-based genetic databases. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:758-761 [Journal ] Purvesh Khatri , Sivakumar Sellamuthu , Pooja Malhotra , Kashyap Amin , Arina Done , Sorin Draghici Recent additions and improvements to the Onto-Tools. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:762-765 [Journal ] M. L. Hekkelman , G. Vriend MRS: a fast and compact retrieval system for biological data. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:766-769 [Journal ] Benjamin R. Landsteiner , Michael R. Olson , Robert Rutherford Current Comparative Table (CCT) automates customized searches of dynamic biological databases. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:770-773 [Journal ] Thomas Götz , Claus-Wilhelm von der Lieth PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:774-778 [Journal ] Holger Maier , Stefanie Döhr , Korbinian Grote , Sean O'Keeffe , Thomas Werner , Martin Hrabé de Angelis , Ralf Schneider LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:779-782 [Journal ] Andreas Doms , Michael Schroeder GoPubMed: exploring PubMed with the Gene Ontology. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:783-786 [Journal ]