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Nucleic Acids Research
2005, volume: 33, number: Web-Server-Issue


  1. Editorial. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:1- [Journal]
  2. Joanne A. Fox, Stefanie L. Butland, Scott McMillan, Graeme Campbell, B. F. Francis Ouellette
    The Bioinformatics Links Directory: a Compilation of Molecular Biology Web Servers. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:3-24 [Journal]
  3. Sharmila Pillai, Ville Silventoinen, Kimmo Kallio, M. Senger, Siamak Sobhany, John G. Tate, Samir S. Velankar, Adel Golovin, Kim Henrick, P. Rice, Peter Stoehr, Rodrigo Lopez
    SOAP-based services provided by the European Bioinformatics Institute. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:25-28 [Journal]
  4. Goran Neshich, Luiz C. Borro, Roberto H. Higa, Paula R. Kuser, Michel E. B. Yamagishi, Eduardo H. Franco, João N. Krauchenco, Renato Fileto, André A. Ribeiro, George B. P. Bezerra, Thiago M. Velludo, Tomás S. Jimenez, Noboru Furukawa, Hirofumi Teshima, Koji Kitajima, K. Abdulla Bava, Akinori Sarai, Roberto C. Togawa, Adauto L. Mancini
    The Diamond STING server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:29-35 [Journal]
  5. Kevin Bryson, Liam J. McGuffin, Russell L. Marsden, Jonathan J. Ward, Jaspreet Singh Sodhi, David T. Jones
    Protein structure prediction servers at University College London. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:36-38 [Journal]
  6. Vladimir Sobolev, Eran Eyal, Sergey Gerzon, Vladimir Potapov, Mariana Babor, Jaime Prilusky, Marvin Edelman
    SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:39-43 [Journal]
  7. C. Alland, F. Moreews, D. Boens, M. Carpentier, S. Chiusa, M. Lonquety, N. Renault, Y. Wong, H. Cantalloube, J. Chomilier, J. Hochez, J. Pothier, B. O. Villoutreix, J. F. Zagury, P. Tufféry
    RPBS: a web resource for structural bioinformatics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:44-49 [Journal]
  8. Alessandro Paiardini, Francesco Bossa, Stefano Pascarella
    CAMPO, SCR_FIND and CHC_FIND: a suite of web tools for computational structural biology. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:50-55 [Journal]
  9. Gabriela G. Loots, Ivan Ovcharenko
    Dcode.org anthology of comparative genomic tools. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:56-64 [Journal]
  10. Jérôme Gracy, Laurent Chiche
    PAT: a protein analysis toolkit for integrated biocomputing on the web. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:65-71 [Journal]
  11. Jianlin Cheng, Arlo Z. Randall, Michael J. Sweredoski, Pierre Baldi
    SCRATCH: a protein structure and structural feature prediction server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:72-76 [Journal]
  12. Ling-Hong Hung, Shing-Chung Ngan, Tianyun Liu, Ram Samudrala
    PROTINFO: new algorithms for enhanced protein structure predictions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:77-80 [Journal]
  13. Ori Sasson, Michal Linial
    ProTarget: automatic prediction of protein structure novelty. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:81-84 [Journal]
  14. P. Ananthalakshmi, Ch. Kiran Kumar, M. Jeyasimhan, K. Sumathi, Krishna Sekar
    Fragment Finder: a web-based software to identify similar three-dimensional structural motif. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:85-88 [Journal]
  15. Roman A. Laskowski, James D. Watson, Janet M. Thornton
    ProFunc: a server for predicting protein function from 3D structure. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:89-93 [Journal]
  16. Guoli Wang, Roland L. Dunbrack Jr.
    PISCES: recent improvements to a PDB sequence culling server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:94-98 [Journal]
  17. Vladimir A. Ivanisenko, Alexey M. Eroshkin, Nikolay A. Kolchanov
    WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:99-104 [Journal]
  18. Dan Xie, Ao Li, Minghui Wang, Zhewen Fan, Huanqing Feng
    LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:105-110 [Journal]
  19. Adam Zemla, Carol Ecale Zhou, Tom Slezak, Tom Kuczmarski, D. Rama, Clinton Torres, D. Sawicka, Daniel Barsky
    AS2TS system for protein structure modeling and analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:111-115 [Journal]
  20. Emmanuel Quevillon, Ville Silventoinen, Sharmila Pillai, Nicola Harte, Nicola J. Mulder, Rolf Apweiler, Rodrigo Lopez
    InterProScan: protein domains identifier. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:116-120 [Journal]
  21. Maria Novatchkova, Michael Wildpaner, Dieter Schweizer, Frank Eisenhaber
    PhyloDome - visualization of taxonomic distributions of domains occurring in eukaryote protein sequence sets. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:121-125 [Journal]
  22. O. Krishnadev, N. Rekha, Shashi B. Pandit, S. Abhiman, S. Mohanty, L. S. Swapna, S. Gore, Narayanaswamy Srinivasan
    PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:126-129 [Journal]
  23. Ganesan Pugalenthi, Govindaraju Archunan, Ramanathan Sowdhamini
    DIAL: a web-based server for the automatic identification of structural domains in proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:130-132 [Journal]
  24. Gabriele Ausiello, Andreas Zanzoni, Daniele Peluso, Allegra Via, Manuela Helmer-Citterich
    pdbFun: mass selection and fast comparison of annotated PDB residues. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:133-137 [Journal]
  25. Pedro A. Reche, Ellis L. Reinherz
    PEPVAC: a web server for multi-epitope vaccine development based on the prediction of supertypic MHC ligands. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:138-142 [Journal]
  26. Manoj Bhasin, G. P. S. Raghava
    GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:143-147 [Journal]
  27. Yukimitsu Yabuki, Takahiko Muramatsu, Takatsugu Hirokawa, Hidehito Mukai, Makiko Suwa
    GRIFFIN: a system for predicting GPCR-G-protein coupling selectivity using a support vector machine and a hidden Markov model. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:148-153 [Journal]
  28. Manish Kumar, Manoj Bhasin, Navjot K. Natt, G. P. S. Raghava
    BhairPred: prediction of ß-hairpins in a protein from multiple alignment information using ANN and SVM techniques. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:154-159 [Journal]
  29. Richard A. George, Kuang Lin, Jaap Heringa
    Scooby-domain: prediction of globular domains in protein sequence. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:160-163 [Journal]
  30. M. Michael Gromiha, Shandar Ahmad, Makiko Suwa
    TMBETA-NET: discrimination and prediction of membrane spanning ß-strands in outer membrane proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:164-167 [Journal]
  31. Urmila Kulkarni-Kale, Shriram Bhosle, Ashok S. Kolaskar
    CEP: a conformational epitope prediction server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:168-171 [Journal]
  32. Guanglan Zhang, Asif M. Khan, Kellathur N. Srinivasan, J. Thomas August, Vladimir Brusic
    MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:172-179 [Journal]
  33. Guanglan Zhang, Kellathur N. Srinivasan, Anitha Veeramani, J. Thomas August, Vladimir Brusic
    PREDBALB/c: a system for the prediction of peptide binding to H2d molecules, a haplotype of the BALB/c mouse. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:180-183 [Journal]
  34. Yu Xue, Fengfeng Zhou, Minjie Zhu, Kashif Ahmed, Guoliang Chen, Xuebiao Yao
    GPS: a comprehensive www server for phosphorylation sites prediction. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:184-187 [Journal]
  35. Andrew G. Garrow, Alison Agnew, David R. Westhead
    TMB-Hunt: a web server to screen sequence sets for transmembrane ß-barrel proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:188-192 [Journal]
  36. Hongyi Zhou, Chi Zhang, Song Liu, Yaoqi Zhou
    Web-based toolkits for topology prediction of transmembrane helical proteins, fold recognition, structure and binding scoring, folding-kinetics analysis and comparative analysis of domain combinations. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:193-197 [Journal]
  37. Piero Fariselli, Michele Finelli, Ivan Rossi, Mauro Amico, Andrea Zauli, Pier Luigi Martelli, Rita Casadio
    TRAMPLE: the transmembrane protein labelling environment. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:198-201 [Journal]
  38. Manoj Bhasin, G. P. S. Raghava
    Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:202-207 [Journal]
  39. Christina Backes, Jan Kuentzer, Hans-Peter Lenhof, Nicole Comtesse, Eckart Meese
    GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:208-213 [Journal]
  40. Andreas Bohne-Lang, Claus-Wilhelm von der Lieth
    GlyProt: in silico glycosylation of proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:214-219 [Journal]
  41. Pankaj Kamra, Rajesh S. Gokhale, Debasisa Mohanty
    SEARCHGTr: a program for analysis of glycosyltransferases involved in glycosylation of secondary metabolites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:220-225 [Journal]
  42. Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Jorng-Tzong Horng
    KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:226-229 [Journal]
  43. F. Ferrè, P. Clote
    DiANNA: a web server for disulfide connectivity prediction. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:230-232 [Journal]
  44. Darby Tien-Hau Chang, Yen-Jen Oyang, Jung-Hsin Lin
    MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:233-238 [Journal]
  45. Markus Gruber, Johannes Söding, Andrei N. Lupas
    REPPER - repeats and their periodicities in fibrous proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:239-243 [Journal]
  46. Johannes Söding, Andreas Biegert, Andrei N. Lupas
    The HHpred interactive server for protein homology detection and structure prediction. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:244-248 [Journal]
  47. Iddo Friedberg, Adam Godzik
    Fragnostic: walking through protein structure space. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:249-251 [Journal]
  48. Kristian Vlahovicek, Alessandro Pintar, Laavanya Parthasarathi, Oliviero Carugo, Sándor Pongor
    CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:252-254 [Journal]
  49. Roee Gutman, Carine Berezin, Roy Wollman, Yossi Rosenberg, Nir Ben-Tal
    QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:255-261 [Journal]
  50. Thomas Yan, Danny Yoo, Tanya Z. Berardini, Lukas A. Mueller, Dan C. Weems, Shuai Weng, J. Michael Cherry, Seung Yon Rhee
    PatMatch: a program for finding patterns in peptide and nucleotide sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:262-266 [Journal]
  51. David La, Dennis R. Livesay
    MINER: software for phylogenetic motif identification. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:267-270 [Journal]
  52. Stefan Roepcke, Petko Fiziev, P. H. Seeburg, Martin Vingron
    SVC: structured visualization of evolutionary sequence conservation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:271-273 [Journal]
  53. Saikat Chakrabarti, Prem A. Anand, Nitin Bhardwaj, Ganesan Pugalenthi, Ramanathan Sowdhamini
    SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:274-276 [Journal]
  54. Iris Bahir, Michal Linial
    ProTeus: identifying signatures in protein termini. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:277-280 [Journal]
  55. Milana Frenkel-Morgenstern, Alice Singer, Hagit Bronfeld, Shmuel Pietrokovski
    One-Block CYRCA: an automated procedure for identifying multiple-block alignments from single block queries. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:281-283 [Journal]
  56. Lukasz Jaroszewski, Leszek Rychlewski, Zhanwen Li, Weizhong Li, Adam Godzik
    FFAS03: a server for profile-profile sequence alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:284-288 [Journal]
  57. Victor A. Simossis, Jaap Heringa
    PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:289-294 [Journal]
  58. Can Alkan, Eray Tüzün, Jerome Buard, Franck Lethiec, Evan E. Eichler, Jeffrey A. Bailey, Süleyman Cenk Sahinalp
    Manipulating multiple sequence alignments via MaM and WebMaM. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:295-298 [Journal]
  59. Meytal Landau, Itay Mayrose, Yossi Rosenberg, Fabian Glaser, Eric Martz, Tal Pupko, Nir Ben-Tal
    ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:299-302 [Journal]
  60. Csaba Magyar, M. Michael Gromiha, Gerard Pujadas, Gábor E. Tusnády, István Simon
    SRide: a server for identifying stabilizing residues in proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:303-305 [Journal]
  61. Emidio Capriotti, Piero Fariselli, Rita Casadio
    I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:306-310 [Journal]
  62. Jessica Dantzer, Charles Moad, Randy Heiland, Sean Mooney
    MutDB services: interactive structural analysis of mutation data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:311-314 [Journal]
  63. William C. Ray
    MAVL/StickWRLD for protein: visualizing protein sequence families to detect non-consensus features. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:315-319 [Journal]
  64. Cédric Binisti, Ahmed Ali Salim, Pierre Tufféry
    PPG: online generation of protein pictures and animations. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:320-323 [Journal]
  65. Jason McDermott, Michal Guerquin, Zachary Frazier, Aaron N. Chang, Ram Samudrala
    BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:324-325 [Journal]
  66. Didier Croes, Fabian Couche, Shoshana J. Wodak, Jacques van Helden
    Metabolic PathFinding: inferring relevant pathways in biochemical networks. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:326-330 [Journal]
  67. Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy
    PRISM: protein interactions by structural matching. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:331-336 [Journal]
  68. Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
    SiteEngines: recognition and comparison of binding sites and protein-protein interfaces. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:337-341 [Journal]
  69. Jens Kleinjung, Franca Fraternali
    POPSCOMP: an automated interaction analysis of biomolecular complexes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:342-346 [Journal]
  70. Osvaldo Graña, Volker A. Eyrich, Florencio Pazos, Burkhard Rost, Alfonso Valencia
    EVAcon: a protein contact prediction evaluation service. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:347-351 [Journal]
  71. Zhenjun Hu, Joe Mellor, Jie Wu, Takuji Yamada, Dustin Holloway, Charles DeLisi
    VisANT: data-integrating visual framework for biological networks and modules. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:352-357 [Journal]
  72. Rajarshi Maiti, Gary H. Van Domselaar, David S. Wishart
    MovieMaker: a web server for rapid rendering of protein motions and interactions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:358-362 [Journal]
  73. Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
    PatchDock and SymmDock: servers for rigid and symmetric docking. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:363-367 [Journal]
  74. John C. Gordon, Jonathan B. Myers, Timothy Folta, Valia Shoja, Lenwood S. Heath, Alexey Onufriev
    H++: a server for estimating pKas and adding missing hydrogens to macromolecules. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:368-371 [Journal]
  75. Maria A. Miteva, Pierre Tufféry, Bruno O. Villoutreix
    PCE: web tools to compute protein continuum electrostatics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:372-375 [Journal]
  76. Brian D. Halligan, Victor Ruotti, Simon N. Twigger, Andrew S. Greene
    DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:376-381 [Journal]
  77. Joost Schymkowitz, Jesper Borg, Francois Stricher, Robby Nys, Frederic Rousseau, Luis Serrano
    The FoldX web server: an online force field. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:382-388 [Journal]
  78. Christopher T. Workman, Yutong Yin, David L. Corcoran, Trey Ideker, Gary D. Stormo, Panayiotis V. Benos
    enoLOGOS: a versatile web tool for energy normalized sequence logos. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:389-392 [Journal]
  79. Stein Aerts, Peter Van Loo, Gert Thijs, Herbert Mayer, Rainer de Martin, Yves Moreau, Bart De Moor
    TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:393-396 [Journal]
  80. Nils Ole Steffens, Claudia Galuschka, Martin Schindler, Lorenz Bülow, Reinhard Hehl
    AthaMap web tools for database-assisted identification of combinatorial cis-regulatory elements and the display of highly conserved transcription factor binding sites in Arabidopsis thaliana. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:397-402 [Journal]
  81. Ivan Ovcharenko, Marcelo A. Nobrega
    Identifying synonymous regulatory elements in vertebrate genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:403-407 [Journal]
  82. Anil G. Jegga, Ashima Gupta, Sivakumar Gowrisankar, Mrunal A. Deshmukh, Steven Connolly, Kevin Finley, Bruce J. Aronow
    CisMols Analyzer: identification of compositionally similar cis-element clusters in ortholog conserved regions of coordinately expressed genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:408-411 [Journal]
  83. Guandong Wang, Taotao Yu, Weixiong Zhang
    WordSpy: identifying transcription factor binding motifs by building a dictionary and learning a grammar. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:412-416 [Journal]
  84. Oleg V. Vishnevsky, Nikolay A. Kolchanov
    ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:417-422 [Journal]
  85. Alessandro Di Cara, Karsten Schmidt 0003, Brian A. Hemmings, Edward J. Oakeley
    PromoterPlot: a graphical display of promoter similarities by pattern recognition. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:423-426 [Journal]
  86. Matti Kankainen, Liisa Holm
    POCO: discovery of regulatory patterns from promoters of oppositely expressed gene sets. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:427-431 [Journal]
  87. D. S. Chekmenev, C. Haid, A. E. Kel
    P-Match: transcription factor binding site search by combining patterns and weight matrices. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:432-437 [Journal]
  88. Stefan Roepcke, Steffen Grossmann, Sven Rahmann, Martin Vingron
    T-Reg Comparator: an analysis tool for the comparison of position weight matrices. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:438-441 [Journal]
  89. David L. Corcoran, Eleanor Feingold, Panayiotis V. Benos
    FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:442-446 [Journal]
  90. Eugene Berezikov, Victor Guryev, Edwin Cuppen
    CONREAL web server: identification and visualization of conserved transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:447-450 [Journal]
  91. John Besemer, Mark Borodovsky
    GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:451-454 [Journal]
  92. Gary H. Van Domselaar, Paul Stothard, Savita Shrivastava, Joseph A. Cruz, Anchi Guo, Xiaoli Dong, Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart
    BASys: a web server for automated bacterial genome annotation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:455-459 [Journal]
  93. Fátima Al-Shahrour, Pablo Minguez, Juan M. Vaquerizas, Lucía Conde, Joaquín Dopazo
    BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:460-464 [Journal]
  94. Mario Stanke, Burkhard Morgenstern
    AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:465-467 [Journal]
  95. Páll Ísólfur Ólason
    Integrating protein annotation resources through the Distributed Annotation System. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:468-470 [Journal]
  96. Stéphane Cruveiller, Jérôme Le Saux, David Vallenet, Aurélie Lajus, Stéphanie Bocs, Claudine Médigue
    MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:471-479 [Journal]
  97. Lei Bao, Mi Zhou, Yan Cui
    nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:480-482 [Journal]
  98. Jinho Yoo, Bonghee Seo, Yangseok Kim
    SNPAnalyzer: a web-based integrated workbench for single-nucleotide polymorphism analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:483-488 [Journal]
  99. Ruifang Zhang, Zanhua Zhu, Hongming Zhu, Tu Nguyen, Fengxia Yao, Kun Xia, Desheng Liang, Chunyu Liu
    SNP Cutter: a comprehensive tool for SNP PCR-RFLP assay design. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:489-492 [Journal]
  100. David Savage, Jacqueline Batley, Timothy A. Erwin, Erica Logan, Christopher G. Love, Geraldine A. C. Lim, Emmanuel Mongin, Gary Barker, German C. Spangenberg, David Edwards
    SNPServer: a real-time SNP discovery tool. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:493-495 [Journal]
  101. Matthias Klaften, Martin Hrabé de Angelis
    ARTS: a web-based tool for the set-up of high-throughput genome-wide mapping panels for the SNP genotyping of mouse mutants. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:496-500 [Journal]
  102. Lucía Conde, Juan M. Vaquerizas, Carles Ferrer-Costa, Xavier de la Cruz, Modesto Orozco, Joaquín Dopazo
    PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:501-505 [Journal]
  103. Eric W. Klee, Kyong Jin Shim, Michael A. Pickart, Stephen C. Ekker, Lynda B. M. Ellis
    AMOD: a morpholino oligonucleotide selection tool. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:506-511 [Journal]
  104. Bernard Fertil, Matthieu Massin, Sylvain Lespinats, Caroline Devic, Philippe Dumee, Alain Giron
    GENSTYLE: exploration and analysis of DNA sequences with genomic signature. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:512-515 [Journal]
  105. Jakob Fredslund, Leif Schauser, Lene H. Madsen, Niels Sandal, Jens Stougaard
    PriFi: using a multiple alignment of related sequences to find primers for amplification of homologs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:516-520 [Journal]
  106. Roman Rydzanicz, X. Sharon Zhao, Philip E. Johnson
    Assembly PCR oligo maker: a tool for designing oligodeoxynucleotides for constructing long DNA molecules for RNA production. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:521-525 [Journal]
  107. Andreas Grote, Karsten Hiller, Maurice Scheer, Richard Münch, Bernd Nörtemann, Dietmar C. Hempel, Dieter Jahn
    JCat: a novel tool to adapt codon usage of a target gene to its potential expression host. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:526-531 [Journal]
  108. Dirk Pöhler, Nadine Werner, Rasmus Steinkamp, Burkhard Morgenstern
    Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:532-534 [Journal]
  109. Per Eystein Sæbø, Sten Morten Andersen, Jon Myrseth, Jon K. Laerdahl, Torbjørn Rognes
    PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:535-539 [Journal]
  110. Laurent Noé, Gregory Kucherov
    YASS: enhancing the sensitivity of DNA similarity search. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:540-543 [Journal]
  111. John Rachlin, Chunming Ding, Charles Cantor, Simon Kasif
    MuPlex: multi-objective multiplex PCR assay design. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:544-547 [Journal]
  112. Steven Ringquist, Christopher Pecoraro, Crystal M. S. Gilchrist, Alexis Styche, William A. Rudert, Panayiotis V. Benos, Massimo Trucco
    SOP3v2: web-based selection of oligonucleotide primer trios for genotyping of human and mouse polymorphisms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:548-552 [Journal]
  113. Chung-Yen Lin, Fan-Kai Lin, Chieh Hua Lin, Li-Wei Lai, Hsiu-Jun Hsu, Shu-Hwa Chen, Chao A. Hsiung
    POWER: PhylOgenetic WEb Repeater - an integrated and user-optimized framework for biomolecular phylogenetic analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:553-556 [Journal]
  114. Stéphane Guindon, Franck Lethiec, Patrice Duroux, Olivier Gascuel
    PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:557-559 [Journal]
  115. Sacha A. F. T. van Hijum, Aldert L. Zomer, Oscar P. Kuipers, Jan Kok
    Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:560-566 [Journal]
  116. Rasmus Wernersson
    FeatureExtract - extraction of sequence annotation made easy. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:567-569 [Journal]
  117. Alejandro Panjkovich, Tomás Norambuena, Francisco Melo
    dnaMATE: a consensus melting temperature prediction server for short DNA sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:570-572 [Journal]
  118. Eivind Tøstesen, Geir Ivar Jerstad, Eivind Hovig
    Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:573-576 [Journal]
  119. Nicholas R. Markham, Michael Zuker
    DINAMelt web server for nucleic acid melting prediction. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:577-581 [Journal]
  120. Zeynep Arziman, Thomas Horn, Michael Boutros
    E-RNAi: a web application to design optimized RNAi constructs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:582-588 [Journal]
  121. Yuki Naito, Tomoyuki Yamada, Takahiro Matsumiya, Kumiko Ui-Tei, Kaoru Saigo, Shinichi Morishita
    dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:589-591 [Journal]
  122. André Boorsma, Barrett C. Foat, Daniel Vis, Frans Klis, Harmen J. Bussemaker
    T-profiler: scoring the activity of predefined groups of genes using gene expression data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:592-595 [Journal]
  123. Chang-Jiun Wu, Simon Kasif
    GEMS: a web server for biclustering analysis of expression data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:596-599 [Journal]
  124. P. Clote
    RNALOSS: a web server for RNA locally optimal secondary structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:600-604 [Journal]
  125. A. Xayaphoummine, T. Bucher, H. Isambert
    Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:605-610 [Journal]
  126. Rasmus Wernersson, Henrik Bjørn Nielsen
    OligoWiz 2.0 - integrating sequence feature annotation into the design of microarray probes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:611-615 [Journal]
  127. Juan M. Vaquerizas, Lucía Conde, Patricio Yankilevich, Amaya Cabezón, Pablo Minguez, Ramón Díaz-Uriarte, Fátima Al-Shahrour, Javier Herrero, Joaquín Dopazo
    GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:616-620 [Journal]
  128. Hee-Joon Chung, Chan Hee Park, Mi Ryung Han, SeokHo Lee, Jung Hun Ohn, Jihoon Kim, Jihun Kim, Ju Han Kim
    ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:621-626 [Journal]
  129. Albert Hsiao, Trey Ideker, Jerrold M. Olefsky, Shankar Subramaniam
    VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:627-632 [Journal]
  130. Bernhard Mlecnik, Marcel Scheideler, Hubert Hackl, Jürgen Hartler, Fatima Sanchez-Cabo, Zlatko Trajanoski
    PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:633-637 [Journal]
  131. Michael Psarros, Steffen Heber, Manuela Sick, Gnanasekaran Thoppae, Keith Harshman, Beate Sick
    RACE: Remote Analysis Computation for gene Expression data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:638-643 [Journal]
  132. Chiara Romualdi, Nicola Vitulo, Micky Del Favero, Gerolamo Lanfranchi
    MIDAW: a web tool for statistical analysis of microarray data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:644-649 [Journal]
  133. Jakob Hull Havgaard, Rune B. Lyngsø, Jan Gorodkin
    The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:650-653 [Journal]
  134. Shobhit Gupta, Martin Vingron, Stefan A. Haas
    T-STAG: resource and web-interface for tissue-specific transcripts and genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:654-658 [Journal]
  135. Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Hiroyuki Toh, Katsuhisa Horimoto
    ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:659-664 [Journal]
  136. Giovanni Lavorgna, Riccardo Triunfo, Federico Santoni, Ugo Orfanelli, Sara Noci, Alessandro Bulfone, Gianluigi Zanetti, Giorgio Casari
    AntiHunter 2.0: increased speed and sensitivity in searching BLAST output for EST antisense transcripts. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:665-668 [Journal]
  137. Xiang Jia Min, Gregory Butler, Reginald Storms, Adrian Tsang
    TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:669-672 [Journal]
  138. Xin Wu, Michael G. Walker, Jingchu Luo, Liping Wei
    GBA server: EST-based digital gene expression profiling. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:673-676 [Journal]
  139. Xiang Jia Min, Gregory Butler, Reginald Storms, Adrian Tsang
    OrfPredictor: predicting protein-coding regions in EST-derived sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:677-680 [Journal]
  140. Namshin Kim, Dajeong Lim, Sanghyuk Lee, Heebal Kim
    ASePCR: alternative splicing electronic RT-PCR in multiple tissues and organs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:681-685 [Journal]
  141. Peter Schattner, Angela N. Brooks, Todd M. Lowe
    The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:686-689 [Journal]
  142. Cei Abreu-Goodger, Enrique Merino
    RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:690-692 [Journal]
  143. Jean Pylouster, Catherine Sénamaud-Beaufort, Tula Ester Saison-Behmoaras
    WEBSAGE: a web tool for visual analysis of differentially expressed human SAGE tags. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:693-695 [Journal]
  144. Ventsislav Rusinov, Vesselin Baev, Ivan Nikiforov Minkov, Martin Tabler
    MicroInspector: a web tool for detection of miRNA binding sites in an RNA sequence. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:696-700 [Journal]
  145. Yuanji Zhang
    miRU: an automated plant miRNA target prediction server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:701-704 [Journal]
  146. Andreas Bohne-Lang, Wolf-Dieter Groch, René Ranzinger
    AISMIG - an interactive server-side molecule image generator. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:705-709 [Journal]
  147. A. Goesmann, B. Linke, D. Bartels, M. Dondrup, L. Krause, H. Neuweger, S. Oehm, T. Paczian, A. Wilke, F. Meyer
    BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:710-716 [Journal]
  148. Marco Masseroli, Osvaldo Galati, Francesco Pinciroli
    GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:717-723 [Journal]
  149. Stephen Rudd, Igor V. Tetko
    Éclair - a web service for unravelling species origin of sequences sampled from mixed host interfaces. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:724-727 [Journal]
  150. David M. Aanensen, Brian G. Spratt
    The multilocus sequence typing network: mlst.net. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:728-733 [Journal]
  151. Tsute Chen, Kevin Abbey, Wen-jie Deng, Meng-chuan Cheng
    The bioinformatics resource for oral pathogens. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:734-740 [Journal]
  152. Bing Zhang, Stefan Kirov, Jay Snoddy
    WebGestalt: an integrated system for exploring gene sets in various biological contexts. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:741-748 [Journal]
  153. Peter Juvan, Janez Demsar, Gad Shaulsky, Blaz Zupan
    GenePath: from mutations to genetic networks and back. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:749-752 [Journal]
  154. Taro L. Saito, Jun Sese, Yoichiro Nakatani, Fumi Sano, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita
    Data mining tools for the Saccharomyces cerevisiae morphological database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:753-757 [Journal]
  155. M. A. van Driel, K. Cuelenaere, P. P. C. W. Kemmeren, J. A. M. Leunissen, H. G. Brunner, Gert Vriend
    GeneSeeker: extraction and integration of human disease-related information from web-based genetic databases. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:758-761 [Journal]
  156. Purvesh Khatri, Sivakumar Sellamuthu, Pooja Malhotra, Kashyap Amin, Arina Done, Sorin Draghici
    Recent additions and improvements to the Onto-Tools. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:762-765 [Journal]
  157. M. L. Hekkelman, G. Vriend
    MRS: a fast and compact retrieval system for biological data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:766-769 [Journal]
  158. Benjamin R. Landsteiner, Michael R. Olson, Robert Rutherford
    Current Comparative Table (CCT) automates customized searches of dynamic biological databases. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:770-773 [Journal]
  159. Thomas Götz, Claus-Wilhelm von der Lieth
    PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:774-778 [Journal]
  160. Holger Maier, Stefanie Döhr, Korbinian Grote, Sean O'Keeffe, Thomas Werner, Martin Hrabé de Angelis, Ralf Schneider
    LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:779-782 [Journal]
  161. Andreas Doms, Michael Schroeder
    GoPubMed: exploring PubMed with the Gene Ontology. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:783-786 [Journal]
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