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Nucleic Acids Research
2007, volume: 35, number: Database-Issue

  1. Alex Bateman
    Editorial. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:1-2 [Journal]
  2. Michael Y. Galperin
    The Molecular Biology Database Collection: 2007 update. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:3-4 [Journal]
  3. David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Vadim Miller, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko
    Database resources of the National Center for Biotechnology Information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:5-12 [Journal]
  4. Hideaki Sugawara, Takashi Abe, Takashi Gojobori, Yoshio Tateno
    DDBJ working on evaluation and classification of bacterial genes in INSDC. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:13-15 [Journal]
  5. Tamara Kulikova, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Lawrence Bower, Paul Browne, Matias Castro, Guy Cochrane, Karyn Duggan, Ruth Eberhardt, Nadeem Faruque, Gemma Hoad, Carola Kanz, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Sheila Plaister, Siamak Sobhany, Peter Stoehr, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
    EMBL Nucleotide Sequence Database in 2006. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:16-20 [Journal]
  6. Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler
    GenBank. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:21-25 [Journal]
  7. Donna R. Maglott, James Ostell, Kim D. Pruitt, Tatiana A. Tatusova
    Entrez Gene: gene-centered information at NCBI. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:26-31 [Journal]
  8. Christoph Dieterich, M. W. Franz, Martin Vingron
    Developments in CORG: a gene-centric comparative genomics resource. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:32-35 [Journal]
  9. Sunil Archak, Eshwar Meduri, P. Sravana Kumar, Javaregowda Nagaraju
    InSatDb: a microsatellite database of fully sequenced insect genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:36-39 [Journal]
  10. Conrad A. Nieduszynski, Shin-ichiro Hiraga, Prashanth Ak, Craig J. Benham, Anne D. Donaldson
    OriDB: a DNA replication origin database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:40-46 [Journal]
  11. Byungwook Lee, Taehyung Kim, Seon-Kyu Kim, Kwang Hyung Lee, Doheon Lee
    Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:47-50 [Journal]
  12. Lei Bao, Mi Zhou, Ligang Wu, Lu Lu, Dan Goldowitz, Robert W. Williams, Yan Cui
    PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:51-54 [Journal]
  13. John E. Karro, Yangpan Yan, Deyou Zheng, Zhaolei Zhang, Nicholas Carriero, Philip Cayting, Paul M. Harrison, Mark Gerstein
    Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:55-60 [Journal]
  14. Kim D. Pruitt, Tatiana A. Tatusova, Donna R. Maglott
    NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:61-65 [Journal]
  15. Cristian Chaparro, Romain Guyot, Andrea Zuccolo, Benoît Piégu, Olivier Panaud
    RetrOryza: a database of the rice LTR-retrotransposons. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:66-70 [Journal]
  16. I. Agrafioti, Michael P. H. Stumpf
    SNPSTR: a database of compound microsatellite-SNP markers. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:71-75 [Journal]
  17. Gang Wu, Yuanpu Zheng, Imran Qureshi, Htar Thant Zin, Tyler Beck, Blazej Bulka, Stephen J. Freeland
    SGDB: a database of synthetic genes re-designed for optimizing protein over-expression. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:76-79 [Journal]
  18. Yevgeniy Gelfand, Alfredo Rodriguez, Gary Benson
    TRDB - The Tandem Repeats Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:80-87 [Journal]
  19. Axel Visel, Simon Minovitsky, Inna Dubchak, Len A. Pennacchio
    VISTA Enhancer Browser - a database of tissue-specific human enhancers. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:88-92 [Journal]
  20. Namshin Kim, Alexander V. Alekseyenko, Meenakshi Roy, Christopher Lee
    The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:93-98 [Journal]
  21. Yeunsook Lee, Younghee Lee, Bumjin Kim, Youngah Shin, Seungyoon Nam, Pora Kim, Namshin Kim, Won-Hyong Chung, Jaesang Kim, Sanghyuk Lee
    ECgene: an alternative splicing database update. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:99-103 [Journal]
  22. Jun-ichi Takeda, Yutaka Suzuki, Mitsuteru Nakao, Tsuyoshi Kuroda, Sumio Sugano, Takashi Gojobori, Tadashi Imanishi
    H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:104-109 [Journal]
  23. Tyler S. Alioto
    U12DB: a database of orthologous U12-type spliceosomal introns. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:110-115 [Journal]
  24. Anil G. Jegga, Jing Chen, Sivakumar Gowrisankar, Mrunal A. Deshmukh, RangaChandra Gudivada, Sue Kong, Vivek Kaimal, Bruce J. Aronow
    GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:116-121 [Journal]
  25. Vincent Ferretti, Christian Poitras, Dominique Bergeron, Benoit Coulombe, François Robert, Mathieu Blanchette
    PReMod: a database of genome-wide mammalian cis-regulatory module predictions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:122-126 [Journal]
  26. Mikhail Pachkov, Ionas Erb, Nacho Molina, Erik van Nimwegen
    SwissRegulon: a database of genome-wide annotations of regulatory sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:127-131 [Journal]
  27. Abel González Pérez, Vladimir Espinosa Angarica, Ana Tereza R. Vasconcelos, Julio Collado-Vides
    Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:132-136 [Journal]
  28. C. Jiang, Z. Xuan, F. Zhao, M. Q. Zhang
    TRED: a transcriptional regulatory element database, new entries and other development. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:137-140 [Journal]
  29. Tao He, Pufeng Du, Yanda Li
    dbRES: a web-oriented database for annotated RNA editing sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:141-144 [Journal]
  30. Taishin Kin, Kouichirou Yamada, Goro Terai, Hiroaki Okida, Yasuhiko Yoshinari, Yukiteru Ono, Aya Kojima, Yuki Kimura, Takashi Komori, Kiyoshi Asai
    fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:145-148 [Journal]
  31. Molly Megraw, Praveen Sethupathy, Benoit Corda, Artemis G. Hatzigeorgiou
    miRGen: a database for the study of animal microRNA genomic organization and function. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:149-155 [Journal]
  32. Yong Zhang, Jiongtang Li, Lei Kong, Ge Gao, Qing-Rong Liu, Liping Wei
    NATsDB: Natural Antisense Transcripts DataBase. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:156-161 [Journal]
  33. Maciej Szymanski, Volker A. Erdmann, Jan Barciszewski
    Noncoding RNAs database (ncRNAdb). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:162-164 [Journal]
  34. Ju Youn Lee, Ijen Yeh, Ji Yeon Park, Bin Tian
    PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:165-168 [Journal]
  35. James R. Cole, B. Chai, Ryan J. Farris, Q. Wang, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, A. M. Bandela, E. Cardenas, George M. Garrity, James M. Tiedje
    The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:169-172 [Journal]
  36. Ernesto Picardi, Teresa Maria Rosaria Regina, Axel Brennicke, Carla Quagliariello
    REDIdb: the RNA editing database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:173-177 [Journal]
  37. Ken C. Pang, Stuart Stephen, Marcel E. Dinger, Pär G. Engström, Boris Lenhard, John S. Mattick
    RNAdb 2.0 - an expanded database of mammalian non-coding RNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:178-182 [Journal]
  38. Jun Xie, Ming Zhang, Tao Zhou, Xia Hua, LiSha Tang, Weilin Wu
    Sno/scaRNAbase: a curated database for small nucleolar RNAs and cajal body-specific RNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:183-187 [Journal]
  39. Michael Hiller, Swetlana Nikolajewa, Klaus Huse, Karol Szafranski, Philip Rosenstiel, Stefan Schuster, Rolf Backofen, Matthias Platzer
    TassDB: a database of alternative tandem splice sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:188-192 [Journal]

  40. The Universal Protein Resource (UniProt). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:193-197 [Journal]
  41. Tiqing Liu, Yuhmei Lin, Xin Wen, Robert N. Jorissen, Michael K. Gilson
    BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:198-201 [Journal]
  42. Di Wu, Feng Cui, Robert L. Jernigan, Zhijun Wu
    PIDD: database for Protein Inter-atomic Distance Distributions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:202-207 [Journal]
  43. Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
    eSLDB: eukaryotic subcellular localization database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:208-212 [Journal]
  44. Joshua L. Heazlewood, Robert E. Verboom, Julian Tonti-Filippini, Ian Small, A. Harvey Millar
    SUBA: the Arabidopsis Subcellular Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:213-218 [Journal]
  45. Gonzalo Lopez, Alfonso Valencia, Michael L. Tress
    FireDB - a database of functionally important residues from proteins of known structure. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:219-223 [Journal]
  46. Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats
    New developments in the InterPro database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:224-228 [Journal]
  47. Andreas Zanzoni, Gabriele Ausiello, Allegra Via, Pier Federico Gherardini, Manuela Helmer-Citterich
    Phospho3D: a database of three-dimensional structures of protein phosphorylation sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:229-231 [Journal]
  48. Paolo Sonego, Mircea Pacurar, Somdutta Dhir, Attila Kertész-Farkas, András Kocsor, Zoltán Gáspári, Jack A. M. Leunissen, Sándor Pongor
    A Protein Classification Benchmark collection for machine learning. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:232-236 [Journal]
  49. Aron Marchler-Bauer, John B. Anderson, Myra K. Derbyshire, Carol DeWeese-Scott, Noreen R. Gonzales, Marc Gwadz, Luning Hao, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Dmitri M. Krylov, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Shennan Lu, Gabriele H. Marchler, Mikhail Mullokandov, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant
    CDD: a conserved domain database for interactive domain family analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:237-240 [Journal]
  50. Elon Portugaly, Nathan Linial, Michal Linial
    EVEREST: a collection of evolutionary conserved protein domains. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:241-246 [Journal]
  51. Huaiyu Mi, Nan Guo, Anish Kejariwal, Paul D. Thomas
    PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:247-252 [Journal]
  52. Antonina Andreeva, Andreas Prlic, Tim J. P. Hubbard, Alexey G. Murzin
    SISYPHUS - structural alignments for proteins with non-trivial relationships. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:253-259 [Journal]
  53. Jeremy D. Selengut, Daniel H. Haft, Tanja Davidsen, Anurhada Ganapathy, Michelle Gwinn-Giglio, William C. Nelson, Alexander R. Richter, Owen White
    TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:260-264 [Journal]
  54. Shalin Seebah, Anita Suresh, Shaowei Zhuo, Yong How Choong, Hazel Chua, Danny Chuon, Roger Beuerman, Chandra Verma
    Defensins knowledgebase: a manually curated database and information source focused on the defensins family of antimicrobial peptides. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:265-268 [Journal]
  55. Richard J. Roberts, Tamas Vincze, Janos Posfai, Dana Macelis
    REBASE - enzymes and genes for DNA restriction and modification. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:269-270 [Journal]
  56. Mark D'Souza, Elizabeth M. Glass, Mustafa H. Syed, Yi Zhang, Alexis Rodriguez, Natalia Maltsev, Michael Y. Galperin
    Sentra: a database of signal transduction proteins for comparative genome analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:271-273 [Journal]
  57. Qinghu Ren, Kaixi Chen, Ian T. Paulsen
    TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:274-279 [Journal]
  58. Philip Toukach, Hiren J. Joshi, René Ranzinger, Yuri Knirel, Claus-Wilhelm von der Lieth
    Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:280-286 [Journal]
  59. M. Frank, T. Lütteke, C.-W. von der Lieth
    GlycoMapsDB: a database of the accessible conformational space of glycosidic linkages. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:287-290 [Journal]
  60. Lesley H. Greene, Tony E. Lewis, Sarah Addou, Alison Cuff, Timothy Dallman, Mark Dibley, Oliver Redfern, Frances M. G. Pearl, Rekha Nambudiry, Adam Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton, Christine A. Orengo
    The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:291-297 [Journal]
  61. Yanli Wang, Kenneth J. Addess, Jie Chen, Lewis Y. Geer, Jane He, Siqian He, Shennan Lu, Thomas Madej, Aron Marchler-Bauer, Paul A. Thiessen, Naigong Zhang, Stephen H. Bryant
    MMDB: annotating protein sequences with Entrez's 3D-structure database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:298-300 [Journal]
  62. Helen M. Berman, Kim Henrick, Haruki Nakamura, John L. Markley
    The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:301-303 [Journal]
  63. Kate F. Fulton, Mark A. Bate, Noel G. Faux, Khalid Mahmood, Chris Betts, Ashley M. Buckle
    Protein Folding Database (PFD 2.0): an online environment for the International Foldeomics Consortium. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:304-307 [Journal]
  64. Derek Wilson, Martin Madera, Christine Vogel, Cyrus Chothia, Julian Gough
    The SUPERFAMILY database in 2007: families and functions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:308-313 [Journal]
  65. M. Michael Gromiha, Yukimitsu Yabuki, Srinesh Kundu, Sivasundaram Suharnan, Makiko Suwa
    TMBETA-GENOME: database for annotated ß-barrel membrane proteins in genomic sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:314-316 [Journal]
  66. Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyin
    TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:317-321 [Journal]
  67. Gil Alterovitz, Michael Xiang, Mamta Mohan, Marco Ramoni
    GO PaD: the Gene Ontology Partition Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:322-327 [Journal]
  68. Yuying Tian, Allan W. Dickerman
    GeneTrees: a phylogenomics resource for prokaryotes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:328-331 [Journal]
  69. T. Ryan Gregory, James A. Nicol, Heidi Tamm, Bellis Kullman, Kaur Kullman, Ilia J. Leitch, Brian G. Murray, Donald F. Kapraun, Johann Greilhuber, Michael D. Bennett
    Eukaryotic genome size databases. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:332-338 [Journal]
  70. Masaki Hirahata, Takashi Abe, Naoto Tanaka, Yoshikazu Kuwana, Yasumasa Shigemoto, Satoru Miyazaki, Yoshiyuki Suzuki, Hideaki Sugawara
    Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:339-342 [Journal]
  71. Ikuo Uchiyama
    MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:343-346 [Journal]
  72. Leslie Klis McNeil, Claudia Reich, Ramy K. Aziz, Daniela Bartels, Matthew Cohoon, Terry Disz, Robert A. Edwards, Svetlana Gerdes, Kaitlyn Hwang, Michael Kubal, Gohar Rem Margaryan, Folker Meyer, William Mihalo, Gary J. Olsen, Robert Olson, Andrei Osterman, Daniel Paarmann, Tobias Paczian, Bruce D. Parrello, Gordon D. Pusch, Dmitry A. Rodionov, Xinghua Shi, Olga Vassieva, Veronika Vonstein, Olga Zagnitko, Fangfang Xia, Jenifer Zinner, Ross A. Overbeek, Rick Stevens
    The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:347-353 [Journal]
  73. M. Louise Riley, Thorsten Schmidt, Irena I. Artamonova, Christian Wagner, Andreas Volz, Klaus Heumann, Hans-Werner Mewes, Dmitrij Frishman
    PEDANT genome database: 10 years online. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:354-357 [Journal]
  74. Christian von Mering, Lars Juhl Jensen, Michael Kuhn, Samuel Chaffron, Tobias Doerks, Beate Krüger, Berend Snel, Peer Bork
    STRING 7 - recent developments in the integration and prediction of protein interactions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:358-362 [Journal]
  75. Christophe Combet, Nicolas Garnier, Céline Charavay, Delphine Grando, Daniel Crisan, Julien Lopez, Alexandre Dehne-Garcia, Christophe Geourjon, Emmanuel Bettler, Chantal Hulo, Philippe Le Mercier, Ralf Bartenschlager, Helmut Diepolder, Darius Moradpour, Jean-Michel Pawlotsky, Charles M. Rice, Christian Trépo, François Penin, Gilbert Deléage
    euHCVdb: the European hepatitis C virus database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:363-366 [Journal]
  76. Saravanamuttu Gnaneshan, Samreen Ijaz, Joanne Moran, Mary Ramsay, Jonathan Green
    HepSEQ: International Public Health Repository for Hepatitis B. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:367-370 [Journal]
  77. Calvin Pan, Joseph Kim, Lamei Chen, Qi Wang, Christopher Lee
    The HIV positive selection mutation database. [Citation Graph (0, 0)][DBLP]
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    Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research. [Citation Graph (0, 0)][DBLP]
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    ViTa: prediction of host microRNAs targets on viruses. [Citation Graph (0, 0)][DBLP]
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  80. Luke E. Ulrich, Igor B. Zhulin
    MiST: a microbial signal transduction database. [Citation Graph (0, 0)][DBLP]
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  81. Carol Ecale Zhou, Jason Smith, Marisa Lam, Adam Zemla, M. D. Dyer, Tom Slezak
    MvirDB - a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. [Citation Graph (0, 0)][DBLP]
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  82. Sung Ho Yoon, Young-Kyu Park, Soohyun Lee, Doil Choi, Tae Kwang Oh, Cheol-Goo Hur, Jihyun F. Kim
    Towards pathogenomics: a web-based resource for pathogenicity islands. [Citation Graph (0, 0)][DBLP]
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  83. E. E. Snyder, N. Kampanya, J. Lu, Eric K. Nordberg, H. R. Karur, M. Shukla, Jeetendra Soneja, Y. Tian, Tian Xue, H. Yoo, F. Zhang, C. Dharmanolla, N. V. Dongre, J. J. Gillespie, J. Hamelius, M. Hance, K. I. Huntington, D. Jukneliene, J. Koziski, L. Mackasmiel, S. P. Mane, V. Nguyen, A. Purkayastha, J. Shallom, G. Yu, Y. Guo, J. Gabbard, D. Hix, A. F. Azad, S. C. Baker, S. M. Boyle, Y. Khudyakov, X. J. Meng, C. Rupprecht, J. Vinje, Oswald Crasta, M. J. Czar, Allan Dickerman, J. Dana Eckart, Ron Kenyon, Rebecca Will, J. C. Setubal, Bruno W. S. Sobral
    PATRIC: The VBI PathoSystems Resource Integration Center. [Citation Graph (0, 0)][DBLP]
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  84. Alexei E. Kazakov, Michael J. Cipriano, Pavel S. Novichkov, Simon Minovitsky, Dmitry V. Vinogradov, Adam Arkin, Andrey A. Mironov, Mikhail S. Gelfand, Inna Dubchak
    RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. [Citation Graph (0, 0)][DBLP]
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  85. Kim Brügger
    The Sulfolobus database. [Citation Graph (0, 0)][DBLP]
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  86. Chia-Hung Chang, Yu-Chung Chang, Anthony Underwood, Chien-Shun Chiou, Cheng-Yan Kao
    VNTRDB: a bacterial variable number tandem repeat locus database. [Citation Graph (0, 0)][DBLP]
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  87. Bradley I. Arshinoff, Garret Suen, Eric M. Just, Sohel M. Merchant, Warren A. Kibbe, Rex L. Chisholm, Roy D. Welch
    Xanthusbase: adapting wikipedia principles to a model organism database. [Citation Graph (0, 0)][DBLP]
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  88. Cristina Aurrecoechea, Mark Heiges, Haiming Wang, Zhiming Wang, Steve Fischer, Philippa Rhodes, John A. Miller, Eileen Kraemer, Christian J. Stoeckert Jr., David S. Roos, Jessica C. Kissinger
    ApiDB: integrated resources for the apicomplexan bioinformatics resource center. [Citation Graph (0, 0)][DBLP]
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  89. Junichi Watanabe, Hiroyuki Wakaguri, Masahide Sasaki, Yutaka Suzuki, Sumio Sugano
    Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs. [Citation Graph (0, 0)][DBLP]
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  90. Olivier Arnaiz, Scott Cain, Jean Cohen, Linda Sperling
    ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. [Citation Graph (0, 0)][DBLP]
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  91. Emmet A. O'Brien, Liisa B. Koski, Yue Zhang, LiuSong Yang, Eric Wang, Michael W. Gray, Gertraud Burger, B. Franz Lang
    TBestDB: a taxonomically broad database of expressed sequence tags (ESTs). [Citation Graph (0, 0)][DBLP]
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  92. Martha B. Arnaud, Maria C. Costanzo, Marek S. Skrzypek, Prachi Shah, Gail Binkley, Christopher Lane, Stuart R. Miyasato, Gavin Sherlock
    Sequence resources at the Candida Genome Database. [Citation Graph (0, 0)][DBLP]
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  93. Alexandre Gattiker, Christa Niederhauser-Wiederkehr, James Moore, Leandro Hermida, Michael Primig
    The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction. [Citation Graph (0, 0)][DBLP]
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  94. Luciano Fernandez-Ricaud, Jonas Warringer, Elke Ericson, Kerstin Glaab, Pär Davidsson, Fabian Nilsson, Graham J. L. Kemp, Olle Nerman, Anders Blomberg
    PROPHECY - a yeast phenome database, update 2006. [Citation Graph (0, 0)][DBLP]
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  95. Robert S. Nash, Shuai Weng, Ben Hitz, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Michael S. Livstone, Rose Oughtred, Julie Park, Marek S. Skrzypek, Chandra L. Theesfeld, Gail Binkley, Qing Dong, Christopher Lane, Stuart R. Miyasato, Anand Sethuraman, Mark Schroeder, Kara Dolinski, David Botstein, J. Michael Cherry
    Expanded protein information at SGD: new pages and proteome browser. [Citation Graph (0, 0)][DBLP]
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  96. Lisa R. Girard, Tristan J. Fiedler, Todd W. Harris, Felicia Carvalho, Igor Antoshechkin, Michael Han, Paul W. Sternberg, Lincoln D. Stein, Martin Chalfie
    WormBook: the online review of Caenorhabditis elegans biology. [Citation Graph (0, 0)][DBLP]
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  97. Liangjiang Wang, Suzhi Wang, Yonghua Li, Martin S. R. Paradesi, Susan J. Brown
    BeetleBase: the model organism database for Tribolium castaneum. [Citation Graph (0, 0)][DBLP]
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  98. Donald G. Gilbert
    DroSpeGe: rapid access database for new Drosophila species genomes. [Citation Graph (0, 0)][DBLP]
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  99. Madeline A. Crosby, Joshua L. Goodman, Victor B. Strelets, Peili Zhang, William M. Gelbart
    FlyBase: genomes by the dozen. [Citation Graph (0, 0)][DBLP]
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  100. Thomas Horn, Zeynep Arziman, Juerg Berger, Michael Boutros
    GenomeRNAi: a database for cell-based RNAi phenotypes. [Citation Graph (0, 0)][DBLP]
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  101. Christoph Dieterich, Waltraud Roeseler, Patrick Sobetzko, Ralf J. Sommer
    Pristionchus.org: a genome-centric database of the nematode satellite species Pristionchus pacificus. [Citation Graph (0, 0)][DBLP]
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  102. Daniel Lawson, Peter Arensburger, Peter Atkinson, Nora J. Besansky, Robert V. Bruggner, Ryan Butler, Kathryn S. Campbell, George K. Christophides, Scott Christley, Emmanuel Dialynas, David Emmert, Martin Hammond, Catherine A. Hill, Ryan C. Kennedy, Neil F. Lobo, M. Robert MacCallum, Gregory R. Madey, Karine Megy, Seth Redmond, Susan Russo, David W. Severson, Eric O. Stinson, Pantelis Topalis, Evgeni M. Zdobnov, Ewan Birney, William M. Gelbart, Fotis C. Kafatos, Christos Louis, Frank H. Collins
    VectorBase: a home for invertebrate vectors of human pathogens. [Citation Graph (0, 0)][DBLP]
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  103. Tamberlyn Bieri, Darin Blasiar, Philip Ozersky, Igor Antoshechkin, Carol Bastiani, Payan Canaran, Juancarlos Chan, Nansheng Chen, Wen J. Chen, Paul Davis, Tristan J. Fiedler, Lisa Girard, Michael Han, Todd W. Harris, Ranjana Kishore, Raymond Lee, Sheldon McKay, Hans-Michael Müller, Cecilia Nakamura, Andrei Petcherski, Arun Rangarajan, Anthony Rogers, Gary Schindelman, Erich M. Schwarz, William Spooner, Mary Ann Tuli, Kimberly Van Auken, Daniel Wang, Xiaodong Wang, Gary Williams, Richard Durbin, Lincoln D. Stein, Paul W. Sternberg, John Spieth
    WormBase: new content and better access. [Citation Graph (0, 0)][DBLP]
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  104. Jens Barthelmes, Christian Ebeling, Antje Chang, Ida Schomburg, Dietmar Schomburg
    BRENDA, AMENDA and FRENDA: the enzyme information system in 2007. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:511-514 [Journal]
  105. Gemma L. Holliday, Daniel E. Almonacid, Gail J. Bartlett, Noel M. O'Boyle, James W. Torrance, Peter Murray-Rust, John B. O. Mitchell, Janet M. Thornton
    MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:515-520 [Journal]
  106. David S. Wishart, Dan Tzur, Craig Knox, Roman Eisner, Anchi Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude Coutouly, Ian J. Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David. D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. MacInnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russell Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, Lori Querengesser
    HMDB: the Human Metabolome Database. [Citation Graph (0, 0)][DBLP]
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  107. Manish Sud, Eoin Fahy, Dawn Cotter, Alex Brown, Edward A. Dennis, Christopher K. Glass, Alfred H. Merrill Jr., Robert C. Murphy, Christian R. H. Raetz, David W. Russell, Shankar Subramaniam
    LMSD: LIPID MAPS structure database. [Citation Graph (0, 0)][DBLP]
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  108. Claudia Choi, Richard Münch, Stefan Leupold, Johannes Klein, Inga Siegel, Bernhard Thielen, Beatrice Benkert, Martin Kucklick, Max Schobert, Jens Barthelmes, Christian Ebeling, Isam Haddad, Maurice Scheer, Andreas Grote, Karsten Hiller, Boyke Bunk, Kerstin Schreiber, Ida Retter, Dietmar Schomburg, Dieter Jahn
    SYSTOMONAS - an integrated database for systems biology analysis of Pseudomonas. [Citation Graph (0, 0)][DBLP]
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  109. H. Craig Mak, Mike Daly, Bianca Gruebel, Trey Ideker
    CellCircuits: a database of protein network models. [Citation Graph (0, 0)][DBLP]
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  110. Yoshinobu Igarashi, Alexey M. Eroshkin, Svetlana Gramatikova, Kosi Gramatikoff, Ying Zhang, Jeffrey W. Smith, Andrei Osterman, Adam Godzik
    CutDB: a proteolytic event database. [Citation Graph (0, 0)][DBLP]
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  111. Fedor Kolpakov, Vladimir Poroikov, Ruslan Sharipov, Yury Kondrakhin, Alexey Zakharov, Alexey Lagunin, Luciano Milanesi, Alexander E. Kel
    CYCLONET - an integrated database on cell cycle regulation and carcinogenesis. [Citation Graph (0, 0)][DBLP]
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    DOMINO: a database of domain-peptide interactions. [Citation Graph (0, 0)][DBLP]
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  113. Samuel Kerrien, Y. Alam-Faruque, B. Aranda, I. Bancarz, A. Bridge, C. Derow, Emily Dimmer, M. Feuermann, A. Friedrichsen, R. Huntley, C. Kohler, J. Khadake, C. Leroy, A. Liban, C. Lieftink, Luisa Montecchi-Palazzi, Sandra E. Orchard, J. Risse, K. Robbe, Bernd Roechert, D. Thorneycroft, Y. Zhang, Rolf Apweiler, Henning Hermjakob
    IntAct - open source resource for molecular interaction data. [Citation Graph (0, 0)][DBLP]
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    Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. [Citation Graph (0, 0)][DBLP]
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  115. Andrew Chatr-aryamontri, Arnaud Ceol, Luisa Montecchi-Palazzi, Giuliano Nardelli, Maria Victoria Schneider, Luisa Castagnoli, Gianni Cesareni
    MINT: the Molecular INTeraction database. [Citation Graph (0, 0)][DBLP]
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    PROTCOM: searchable database of protein complexes enhanced with domain-domain structures. [Citation Graph (0, 0)][DBLP]
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  117. Emily R. Jefferson, Thomas P. Walsh, Timothy J. Roberts, Geoffrey J. Barton
    SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions. [Citation Graph (0, 0)][DBLP]
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    UniHI: an entry gate to the human protein interactome. [Citation Graph (0, 0)][DBLP]
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  119. Kieran Hervold, Andrew Martin, Roger A. Kirkpatrick, Paul F. Mc Kenna, F. A. Ramirez-Weber
    Hedgehog Signaling Pathway Database: a repository of current annotation efforts and resources for the Hh research community. [Citation Graph (0, 0)][DBLP]
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    AgBase: a unified resource for functional analysis in agriculture. [Citation Graph (0, 0)][DBLP]
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    AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond. [Citation Graph (0, 0)][DBLP]
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    Ensembl 2007. [Citation Graph (0, 0)][DBLP]
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    The mouse Gene Expression Database (GXD): 2007 update. [Citation Graph (0, 0)][DBLP]
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  124. Raquel Egea, Sònia Casillas, Enol Fernández, Miquel Àngel Senar, Antonio Barbadilla
    MamPol: a database of nucleotide polymorphism in the Mammalia class. [Citation Graph (0, 0)][DBLP]
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  125. Janan T. Eppig, Judith A. Blake, Carol J. Bult, James A. Kadin, Joel E. Richardson
    The mouse genome database (MGD): new features facilitating a model system. [Citation Graph (0, 0)][DBLP]
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  126. Dale A. Begley, Debra M. Krupke, Matthew J. Vincent, John P. Sundberg, Carol J. Bult, Janan T. Eppig
    Mouse Tumor Biology Database (MTB): status update and future directions. [Citation Graph (0, 0)][DBLP]
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    Mouse Phenome Database (MPD). [Citation Graph (0, 0)][DBLP]
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    PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. [Citation Graph (0, 0)][DBLP]
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    PigGIS: Pig Genomic Informatics System. [Citation Graph (0, 0)][DBLP]
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    The Rat Genome Database, update 2007 - Easing the path from disease to data and back again. [Citation Graph (0, 0)][DBLP]
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    The ENCODE Project at UC Santa Cruz. [Citation Graph (0, 0)][DBLP]
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    The UCSC genome browser database: update 2007. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:668-673 [Journal]
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    GeneSpeed: protein domain organization of the transcriptome. [Citation Graph (0, 0)][DBLP]
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  134. Dongmei Zuo, Stephanie E. Mohr, Yanhui Hu, Elena Taycher, Andreas Rolfs, Jason Kramer, Janice Williamson, Joshua LaBaer
    PlasmID: a centralized repository for plasmid clone information and distribution. [Citation Graph (0, 0)][DBLP]
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  135. Koichiro Higasa, Katsuyuki Miyatake, Yoji Kukita, Tomoko Tahira, Kenshi Hayashi
    D-HaploDB: a database of definitive haplotypes determined by genotyping complete hydatidiform mole samples. [Citation Graph (0, 0)][DBLP]
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  136. Sjozef van Baal, Polynikis Kaimakis, Manyphong Phommarinh, Daphne Koumbi, Harry Cuppens, Francesca Riccardino, Milan Macek Jr., Charles R. Scriver, George P. Patrinos
    FINDbase: a relational database recording frequencies of genetic defects leading to inherited disorders worldwide. [Citation Graph (0, 0)][DBLP]
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  138. Anil G. Jegga, Sivakumar Gowrisankar, Jing Chen, Bruce J. Aronow
    PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease. [Citation Graph (0, 0)][DBLP]
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    Snap: an integrated SNP annotation platform. [Citation Graph (0, 0)][DBLP]
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    Variation resources at UC Santa Cruz. [Citation Graph (0, 0)][DBLP]
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    CancerGenes: a gene selection resource for cancer genome projects. [Citation Graph (0, 0)][DBLP]
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    OncoDB.HCC: an integrated oncogenomic database of hepatocellular carcinoma revealed aberrant cancer target genes and loci. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:727-731 [Journal]
  144. Suisheng Tang, Zhuo Zhang, Sin Lam Tan, Man-Hung Eric Tang, Arun Prashanth Kumar, Suresh Kumar Ramadoss, Vladimir B. Bajic
    KBERG: KnowledgeBase for Estrogen Responsive Genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:732-736 [Journal]
  145. Wuxue Zhang, Yong Zhang, Hui Zheng, Chen Zhang, Wei Xiong, John G. Olyarchuk, Michael Walker, Weifeng Xu, Min Zhao, Shuqi Zhao, Zhuan Zhou, Liping Wei
    SynDB: a Synapse protein DataBase based on synapse ontology. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:737-741 [Journal]
  146. Erin M. Hulbert, Luc J. Smink, Ellen C. Adlem, James E. Allen, David B. Burdick, Oliver S. Burren, Christopher C. Cavnor, Geoffrey E. Dolman, Daisy Flamez, Karen F. Friery, Barry C. Healy, Sarah A. Killcoyne, Burak Kutlu, Helen Schuilenburg, Neil M. Walker, Josyf Mychaleckyj, Decio L. Eizirik, Linda S. Wicker, John A. Todd, Nathan Goodman
    T1DBase: integration and presentation of complex data for type 1 diabetes research. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:742-746 [Journal]
  147. Helen E. Parkinson, Misha Kapushesky, Mohammadreza Shojatalab, Niran Abeygunawardena, R. Coulson, Anna Farne, Ele Holloway, N. Kolesnykov, P. Lilja, M. Lukk, R. Mani, Tim Rayner, Anjan Sharma, E. William, Ugis Sarkans, Alvis Brazma
    ArrayExpress - a public database of microarray experiments and gene expression profiles. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:747-750 [Journal]
  148. Joan M. Mazzarelli, John Brestelli, Regina K. Gorski, Junmin Liu, Elisabetta Manduchi, Deborah F. Pinney, Jonathan Schug, Peter White, Klaus H. Kaestner, Christian J. Stoeckert Jr.
    EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:751-755 [Journal]
  149. Fei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R. Mehan, Juan Nunez-Iglesias, Kangyu Zhang, Kiran Kamath, Michael S. Waterman, Caleb E. Finch, Xianghong Jasmine Zhou
    Gene Aging Nexus: a web database and data mining platform for microarray data on aging. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:756-759 [Journal]
  150. Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite, Pierre Ledoux, Dmitry Rudnev, Carlos Evangelista, Irene F. Kim, Alexandra Soboleva, Maxim Tomashevsky, Ron Edgar
    NCBI GEO: mining tens of millions of expression profiles - database and tools update. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:760-765 [Journal]
  151. Janos Demeter, Catherine Beauheim, Jeremy Gollub, Tina Hernandez-Boussard, Heng Jin, Donald Maier, John C. Matese, Michael Nitzberg, Farrell Wymore, Zachariah K. Zachariah, Patrick O. Brown, Gavin Sherlock, Catherine A. Ball
    The Stanford Microarray Database: implementation of new analysis tools and open source release of software. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:766-770 [Journal]
  152. Yanling Zhang, Yong Zhang, Jun Adachi, Jesper V. Olsen, Rong Shi, Gustavo de Souza, Erica Pasini, Leonard J. Foster, Boris Macek, Alexandre Zougman, Chanchal Kumar, Jacek R. Wisniewski, Jan Wang, Matthias Mann
    MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:771-779 [Journal]
  153. Yi-Bu Chen, Ansuman Chattopadhyay, Phillip Bergen, Cynthia Gadd, Nancy Tannery
    The Online Bioinformatics Resources Collection at the University of Pittsburgh Health Sciences Library System - a one-stop gateway to online bioinformatics databases and software tools. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:780-785 [Journal]
  154. Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic, Marc S. Cortese, Agnes Tantos, Beata Szabo, Peter Tompa, Jake Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker
    DisProt: the Database of Disordered Proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:786-793 [Journal]
  155. C. J. Zheng, L. Y. Han, B. Xie, C. Y. Liew, S. Ong, J. Cui, H. L. Zhang, Z. Q. Tang, S. H. Gan, L. Jiang, Y. Z. Chen
    PharmGED: Pharmacogenetic Effect Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:794-799 [Journal]
  156. Alexander Loy, Frank Maixner, Michael Wagner, Matthias Horn
    probeBase - an online resource for rRNA-targeted oligonucleotide probes: new features 2007. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:800-804 [Journal]
  157. Wenwu Cui, Dennis D. Taub, Kevin Gardner
    qPrimerDepot: a primer database for quantitative real time PCR. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:805-809 [Journal]
  158. Nuwee Wiwatwattana, Christopher M. Landau, G. Jamie Cope, Gabriel A. Harp, Anuj Kumar
    Organelle DB: an updated resource of eukaryotic protein localization and function. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:810-814 [Journal]
  159. Agatha Schlüter, Stéphane Fourcade, Enric Domènech-Estévez, Toni Gabaldón, Jaime Huerta-Cepas, Guillaume Berthommier, Raymond Ripp, Ronald J. A. Wanders, Olivier Poch, Aurora Pujol
    PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:815-822 [Journal]
  160. Eduardo Ruiz-Pesini, Marie T. Lott, Vincent Procaccio, Jason C. Poole, Marty C. Brandon, Dan Mishmar, Christina Yi, James Kreuziger, Pierre Baldi, Douglas C. Wallace
    An enhanced MITOMAP with a global mtDNA mutational phylogeny. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:823-828 [Journal]
  161. Cameron Johnson, Lewis Bowman, Alex T. Adai, Vicki Vance, Venkatesan Sundaresan
    CSRDB: a small RNA integrated database and browser resource for cereals. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:829-833 [Journal]
  162. Manuel Spannagl, Octave Noubibou, Dirk Haase, Li Yang, Heidrun Gundlach, Tobias Hindemitt, Kathrin Klee, Georg Haberer, Heiko Schoof, Klaus F. X. Mayer
    MIPSPlantsDB - plant database resource for integrative and comparative plant genome research. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:834-840 [Journal]
  163. Lorenz Bülow, Martin Schindler, Reinhard Hehl
    PathoPlant®: a platform for microarray expression data to analyze co-regulated genes involved in plant defense responses. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:841-845 [Journal]
  164. Kevin L. Childs, John P. Hamilton, Wei Zhu, Eugene Ly, Foo Cheung, Hank Wu, Pablo D. Rabinowicz, Chris D. Town, C. Robin Buell, Agnes P. Chan
    The TIGR Plant Transcript Assemblies database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:846-851 [Journal]
  165. Nigel S. Walker, Nicholas Stiffler, Alice Barkan
    POGs/PlantRBP: a resource for comparative genomics in plants. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:852-856 [Journal]
  166. Claudia Galuschka, Martin Schindler, Lorenz Bülow, Reinhard Hehl
    AthaMap web tools for the analysis and identification of co-regulated genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:857-862 [Journal]
  167. Takeshi Obayashi, Kengo Kinoshita, Kenta Nakai, Masayuki Shibaoka, Shinpei Hayashi, Motoshi Saeki, Daisuke Shibata, Kazuki Saito, Hiroyuki Ohta
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:863-869 [Journal]
  168. Timothy A. Erwin, Erica G. Jewell, Christopher G. Love, Geraldine A. C. Lim, Xi Li, Ross Chapman, Jacqueline Batley, Jason E. Stajich, Emmanuel Mongin, Elia Stupka, Bruce Ross, German C. Spangenberg, David Edwards
    BASC: an integrated bioinformatics system for Brassica research. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:870-873 [Journal]
  169. Yong Li, Mario G. Rosso, Prisca Viehoever, Bernd Weisshaar
    GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:874-878 [Journal]
  170. Huazong Zeng, Lijun Luo, Weixiong Zhang, Jie Zhou, Zuofeng Li, Hongyan Liu, Tiansheng Zhu, Xiangqian Feng, Yang Zhong
    PlantQTL-GE: a database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:879-882 [Journal]
  171. Shu Ouyang, Wei Zhu, John Hamilton, Haining Lin, Matthew Campbell, Kevin L. Childs, Françoise Thibaud-Nissen, Renae L. Malek, Yuandan Lee, Li Zheng, Joshua Orvis, Brian Haas, Jennifer Wortman, C. Robin Buell
    The TIGR Rice Genome Annotation Resource: improvements and new features. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:883-887 [Journal]
  172. Nathalie Pavy, James J. Johnson, John A. Crow, Charles Paule, Timothy M. Kunau, John MacKay, Ernest F. Retzel
    ForestTreeDB: a database dedicated to the mining of tree transcriptomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:888-894 [Journal]
  173. Carolyn J. Lawrence, Mary L. Schaeffer, Trent E. Seigfried, Darwin A. Campbell, Lisa C. Harper
    MaizeGDB's new data types, resources and activities. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:895-900 [Journal]
  174. Nunzio D'Agostino, Mario Aversano, Luigi Frusciante, Maria Luisa Chiusano
    TomatEST database: in silico exploitation of EST data to explore expression patterns in tomato species. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:901-905 [Journal]
  175. Stefan Günther, Dorothea Hempel, Mathias Dunkel, Kristian Rother, Robert Preissner
    SuperHapten: a comprehensive database for small immunogenic compounds. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:906-910 [Journal]
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