Journals in DBLP
Editorial. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:1- [Journal ] Joanne A. Fox , Scott McMillan , B. F. Francis Ouellette A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:3-5 [Journal ] Jian Ye , Scott McGinnis , Thomas L. Madden BLAST: improvements for better sequence analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:6-9 [Journal ] Jeanette Tångrot , Lixiao Wang , Bo Kågström , Uwe H. Sauer FISH - family identification of sequence homologues using structure anchored hidden Markov models. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:10-14 [Journal ] Markus Rampp , Thomas Soddemann , Hermann Lederer The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:15-19 [Journal ] Hanjo Täubig , Arno Buchner , Jan Griebsch PAST: fast structure-based searching in the PDB. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:20-23 [Journal ] Yuko Tsuchiya , Kengo Kinoshita , Nobutoshi Ito , Haruki Nakamura PreBI: prediction of biological interfaces of proteins in crystals. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:20-24 [Journal ] Lee-Wei Yang , A. J. Rader , Xiong Liu , Christopher Jon Jursa , Shann-Ching Chen , Hassan A. Karimi , Ivet Bahar o GNM: online computation of structural dynamics using the Gaussian Network Model. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:24-31 [Journal ] Z. R. Li , H. H. Lin , L. Y. Han , L. Jiang , X. Chen , Y. Z. Chen PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:32-37 [Journal ] Cyril Azuara , Erik Lindahl , Patrice Koehl , Henri Orland , Marc Delarue PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:38-42 [Journal ] Alexander A. Kantardjiev , Boris P. Atanasov PHEPS: web-based pH-dependent Protein Electrostatics Server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:43-47 [Journal ] Barbara M. Tynan-Connolly , Jens Erik Nielsen pKD: re-designing protein pK a values. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:48-51 [Journal ] Erik Lindahl , Cyril Azuara , Patrice Koehl , Marc Delarue NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:52-56 [Journal ] Yunho Jang , Jay I. Jeong , Moon K. Kim UMMS: constrained harmonic and anharmonic analyses of macromolecules based on elastic network models. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:57-62 [Journal ] Mark V. Berjanskii , Stephen Neal , David S. Wishart PREDITOR: a web server for predicting protein torsion angle restraints. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:63-69 [Journal ] M. Michael Gromiha , A. Mary Thangakani , Samuel Selvaraj FOLD-RATE: prediction of protein folding rates from amino acid sequence. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:70-74 [Journal ] Jean-Christophe Gelly , Catherine Etchebest , Serge A. Hazout , Alexandre G. de Brevern Protein Peeling 2: a web server to convert protein structures into series of protein units. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:75-78 [Journal ] Razif R. Gabdoulline , S. Ulbrich , S. Richter , Rebecca C. Wade ProSAT2 - Protein Structure Annotation Server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:79-83 [Journal ] Rasmus Wernersson , Kristoffer Rapacki , Hans Henrik Stærfeldt , Peter Wad Sackett , Anne Mølgaard FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:84-88 [Journal ] Jui-Hung Hung , Hsien-Da Huang , Tzong-Yi Lee ProKware: integrated software for presenting protein structural properties in protein tertiary structures. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:89-94 [Journal ] Edward S. C. Shih , Ruei-chi R. Gan , Ming-Jing Hwang OPAAS: a web server for optimal, permuted, and other alternative alignments of protein structures. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:95-98 [Journal ] Sunghoon Lee , Byungwook Lee , Insoo Jang , Sangsoo Kim , Jong Bhak Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:99-103 [Journal ] Blaise T. F. Alako , Daphne Rainey , Harm Nijveen , Jack A. M. Leunissen TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:104-109 [Journal ] Angel Carro , Michael L. Tress , David de Juan , Florencio Pazos , Pedro Lopez-Romero , Antonio del Sol , Alfonso Valencia , Ana María Rojas TreeDet: a web server to explore sequence space. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:110-115 [Journal ] Joe Dundas , Zheng Ouyang , Jeffery Tseng , T. Andrew Binkowski , Yaron Turpaz , Jie Liang CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:116-118 [Journal ] M. Tyagi , P. Sharma , C. S. Swamy , F. Cadet , N. Srinivasan , Alexandre G. de Brevern , B. Offmann Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:119-123 [Journal ] Shandar Ahmad , Hidetoshi Kono , Marcos J. Araúzo-Bravo , Akinori Sarai ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:124-127 [Journal ] K. Sumathi , P. Ananthalakshmi , M. N. A. Md. Roshan , Krishna Sekar 3dSS: 3D structural superposition. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:128-132 [Journal ] Hatice Gulcin Ozer , William C. Ray MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:133-136 [Journal ] Johannes Söding , Michael Remmert , Andreas Biegert HHrep: de novo protein repeat detection and the origin of TIM barrels. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:137-142 [Journal ] R. Bhadra , S. Sandhya , K. R. Abhinandan , Saikat Chakrabarti , Ramanathan Sowdhamini , N. Srinivasan Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:143-146 [Journal ] Julien Maupetit , R. Gautier , Pierre Tufféry SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:147-151 [Journal ] Chih-Chieh Chen , Jenn-Kang Hwang , Jinn-Moon Yang (PS)2 : protein structure prediction server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:152-157 [Journal ] Lusheng Chen , Wei Wang , Shaoping Ling , Caiyan Jia , Fei Wang KemaDom: a web server for domain prediction using kernel machine with local context. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:158-163 [Journal ] Alessandro Vullo , Oscar Bortolami , Gianluca Pollastri , Silvio C. E. Tosatto Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:164-168 [Journal ] Mauro Amico , Michele Finelli , Ivan Rossi , Andrea Zauli , Arne Elofsson , Håkan Viklund , Gunnar von Heijne , David Jones , Anders Krogh , Piero Fariselli , Pier Luigi Martelli , Rita Casadio PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:169-172 [Journal ] Narcis Fernandez-Fuentes , Jun Zhai , András Fiser ArchPRED: a template based loop structure prediction server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:173-176 [Journal ] Alessio Ceroni , Andrea Passerini , Alessandro Vullo , Paolo Frasconi DISULFIND: a disulfide bonding state and cysteine connectivity prediction server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:177-181 [Journal ] F. Ferrè , P. Clote DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:182-185 [Journal ] Henry R. Bigelow , Burkhard Rost PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:186-188 [Journal ] Jérôme Waldispühl , Bonnie Berger , Peter Clote , Jean-Marc Steyaert transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:189-193 [Journal ] Pierre Dönnes , Oliver Kohlbacher SVMHC: a server for prediction of MHC-binding peptides. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:194-197 [Journal ] Tun-Wen Pai , Margaret Dah-Tsyr Chang , Wen-Shyong Tzou , Bo-Han Su , Pei-Chih Wu , Hao-Teng Chang , Wei-I Chou RE MUS: a tool for identification of unique peptide segments as epitopes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:198-201 [Journal ] Sudipto Saha , G. P. S. Raghava AlgPred: prediction of allergenic proteins and mapping of IgE epitopes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:202-209 [Journal ] Chittibabu Guda pTARGET: a web server for predicting protein subcellular localization. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:210-213 [Journal ] Maria Novatchkova , Georg Schneider , Richard Fritz , Frank Eisenhaber , Alexander Schleiffer DOUTfinder - identification of distant domain outliers using subsignificant sequence similarity. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:214-218 [Journal ] Honglin Li , Zhenting Gao , Ling Kang , Hailei Zhang , Kun Yang , Kunqian Yu , Xiaomin Luo , Weiliang Zhu , Kaixian Chen , Jianhua Shen , Xicheng Wang , Hualiang Jiang TarFisDock: a web server for identifying drug targets with docking approach. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:219-224 [Journal ] Ana P. C. Rodrigues , Barry J. Grant , Roderick E. Hubbard sgTarget: a target selection resource for structural genomics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:225-230 [Journal ] Ganesan Pugalenthi , K. Shameer , N. Srinivasan , Ramanathan Sowdhamini HARMONY: a server for the assessment of protein structures. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:231-234 [Journal ] Yi Liu , Brian Kuhlman RosettaDesign server for protein design. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:235-238 [Journal ] Vijaya Parthiban , M. Michael Gromiha , Dietmar Schomburg CUPSAT: prediction of protein stability upon point mutations. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:239-242 [Journal ] Liangjiang Wang , Susan J. Brown BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:243-248 [Journal ] Hu Chen , Yu Xue , Ni Huang , Xuebiao Yao , Zhirong Sun MeMo: a web tool for prediction of protein methylation modifications. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:249-253 [Journal ] Yu Xue , Fengfeng Zhou , Chuanhai Fu , Ying Xu , Xuebiao Yao SUMOsp: a web server for sumoylation site prediction. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:254-257 [Journal ] Sangtae Kim , Seungjin Na , Ji Woong Sim , Heejin Park , Jaeho Jeong , Hokeun Kim , Younghwan Seo , Jawon Seo , Kong-Joo Lee , Eunok Paek MODi : a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:258-263 [Journal ] Nagarajan Harish , Rekha Gupta , Parul Agarwal , Vinod Scaria , Beena Pillai DyNAVacS: an integrative tool for optimized DNA vaccine design. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:264-266 [Journal ] Bruce R. Southey , Andinet Amare , Tyler A. Zimmerman , Sandra L. Rodriguez-Zas , Jonathan V. Sweedler NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:267-272 [Journal ] Anne de Jong , Sacha A. F. T. van Hijum , Jetta J. E. Bijlsma , Jan Kok , Oscar P. Kuipers BAGEL: a web-based bacteriocin genome mining tool. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:273-279 [Journal ] Shu Ju Hsieh , Chun-Yuan Lin , Ning Han Liu , Wei Yuan Chow , Chuan Yi Tang GeneAlign: a coding exon prediction tool based on phylogenetical comparisons. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:280-284 [Journal ] Simona Rossi , Daniele Masotti , Christine Nardini , Elena Bonora , Giovanni Romeo , Enrico Macii , Luca Benini , Stefano Volinia TOM: a web-based integrated approach for identification of candidate disease genes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:285-292 [Journal ] Jia Ye , Lin Fang , Hongkun Zheng , Yong Zhang , Jie Chen , Zengjin Zhang , Jing Wang , Shengting Li , Ruiqiang Li , Lars Bolund , Jun Wang WEGO: a web tool for plotting GO annotations. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:293-297 [Journal ] Carlos Prieto , Javier De Las Rivas APID: Agile Protein Interaction DataAnalyzer. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:298-302 [Journal ] Darby Tien-Hau Chang , Yi-Zhong Weng , Jung-Hsin Lin , Ming-Jing Hwang , Yen-Jen Oyang Protemot: prediction of protein binding sites with automatically extracted geometrical templates. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:303-309 [Journal ] Andrey Tovchigrechko , Ilya A. Vakser GRAMM-X public web server for protein-protein docking. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:310-314 [Journal ] José M. G. Izarzugaza , David Juan , Carles Pons , Juan A. G. Ranea , Alfonso Valencia , Florencio Pazos TSEMA: interactive prediction of protein pairings between interacting families. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:315-319 [Journal ] Laetitia Martin , Vincent Catherinot , Gilles Labesse kinDOCK: a tool for comparative docking of protein kinase ligands. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:325-329 [Journal ] Christopher J. Penkett , James A. Morris , Valerie Wood , Jürg Bähler YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:330-334 [Journal ] Andreas Biegert , Christian Mayer , Michael Remmert , Johannes Söding , Andrei N. Lupas The MPI Bioinformatics Toolkit for protein sequence analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:335-339 [Journal ] Naveed Massjouni , Corban G. Rivera , T. M. Murali VIRGO: computational prediction of gene functions. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:340-344 [Journal ] Chisato Yamasaki , Hiroaki Kawashima , Fusano Todokoro , Yasuhiro Imamizu , Makoto Ogawa , Motohiko Tanino , Takeshi Itoh , Takashi Gojobori , Tadashi Imanishi TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:345-349 [Journal ] Victor Neduva , Robert B. Russell DILIMOT: discovery of linear motifs in proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:350-355 [Journal ] Chen-Ming Hsu , Chien-Yu Chen , Baw-Jhiune Liu MAGIIC-PRO: detecting functional signatures by efficient discovery of long patterns in protein sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:356-361 [Journal ] Edouard De Castro , Christian J. A. Sigrist , Alexandre Gattiker , Virginie Bulliard , Petra S. Langendijk-Genevaux , Elisabeth Gasteiger , Amos Bairoch , Nicolas Hulo ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:362-365 [Journal ] Shane Neph , Martin Tompa MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:366-368 [Journal ] Timothy L. Bailey , Nadya Williams , Chris Misleh , Wilfred W. Li MEME: discovering and analyzing DNA and protein sequence motifs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:369-373 [Journal ] Johannes Söding , Michael Remmert , Andreas Biegert , Andrei N. Lupas HHsenser: exhaustive transitive profile search using HMM-HMM comparison. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:374-378 [Journal ] Iddo Friedberg , Tim Harder , Adam Godzik JAFA: a protein function annotation meta-server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:379-381 [Journal ] Han Liang , Weihua Zhou , Laura F. Landweber SWAKK: a web server for detecting positive selection in proteins using a sliding window substitution rate analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:382-384 [Journal ] Rasmus Wernersson Virtual Ribosome - a comprehensive DNA translation tool with support for integration of sequence feature annotation. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:385-388 [Journal ] Federico Abascal , Rafael Zardoya , David Posada GenDecoder: genetic code prediction for metazoan mitochondria. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:389-393 [Journal ] T. Z. DeSantis Jr. , Philip Hugenholtz , K. Keller , E. L. Brodie , N. Larsen , Y. M. Piceno , R. Phan , G. L. Andersen NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:394-399 [Journal ] Tobias Dezulian , Martin Schaefer , Roland Wiese , Detlef Weigel , Daniel H. Huson CrossLink: visualization and exploration of sequence relationships between (micro) RNAs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:400-404 [Journal ] Eckart Bindewald , Thomas D. Schneider , Bruce A. Shapiro CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:405-411 [Journal ] Oranit Dror , Ruth Nussinov , Haim J. Wolfson The ARTS web server for aligning RNA tertiary structures. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:412-415 [Journal ] Yanga Byun , Kyungsook Han PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:416-422 [Journal ] Tzu-Hao Chang , Hsien-Da Huang , Tzu-Neng Chuang , Dray-Ming Shien , Jorng-Tzong Horng RNAMST: efficient and flexible approach for identifying RNA structural homologs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:423-428 [Journal ] Hsi-Yuan Huang , Chia-Hung Chien , Kuan-Hua Jen , Hsien-Da Huang RegRNA: an integrated web server for identifying regulatory RNA motifs and elements. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:429-434 [Journal ] Mario Stanke , Oliver Keller , Irfan Gunduz , Alec Hayes , Stephan Waack , Burkhard Morgenstern AUGUSTUS: ab initio prediction of alternative transcripts. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:435-439 [Journal ] Tiziana Castrignanò , Raffaella Rizzi , Ivano Giuseppe Talamo , Paolo D'Onorio De Meo , Anna Anselmo , Paola Bonizzoni , Graziano Pesole ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:440-443 [Journal ] Durgaprasad Bollina , Bernett T. K. Lee , Tin Wee Tan , Shoba Ranganathan ASGS: an alternative splicing graph web service. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:444-447 [Journal ] Yuki Naito , Kumiko Ui-Tei , Toru Nishikawa , Yutaka Takebe , Kaoru Saigo siVirus: web-based antiviral siRNA design software for highly divergent viral sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:448-450 [Journal ] Jan Krüger , Marc Rehmsmeier RNAhybrid: microRNA target prediction easy, fast and flexible. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:451-454 [Journal ] Jin-Wu Nam , Jinhan Kim , Sung-Kyu Kim , Byoung-Tak Zhang ProMiR II: a web server for the probabilistic prediction of clustered, nonclustered, conserved and nonconserved microRNAs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:455-458 [Journal ] Ali Masoudi-Nejad , Koichiro Tonomura , Shuichi Kawashima , Yuki Moriya , Masanori Suzuki , Masumi Itoh , Minoru Kanehisa , Takashi Endo , Susumu Goto EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:459-462 [Journal ] Ming Zhang , Anne-Kathrin Schultz , Charles Calef , Carla Kuiken , Thomas Leitner , Bette Korber , Burkhard Morgenstern , Mario Stanke jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:463-465 [Journal ] Michael Baitaluk , Mayya Sedova , Animesh Ray , Amarnath Gupta BiologicalNetworks: visualization and analysis tool for systems biology. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:466-471 [Journal ] Fátima Al-Shahrour , Pablo Minguez , Joaquín Tárraga , David Montaner , Eva Alloza , Juan M. Vaquerizas , Lucía Conde , Christian Blaschke , Javier Vera , Joaquín Dopazo BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:472-476 [Journal ] Stéphane Liva , Philippe Hupé , Pierre Neuvial , Isabel Brito , Eric Viara , Philippe La Rosa , Emmanuel Barillot CAPweb: a bioinformatics CGH array Analysis Platform. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:477-481 [Journal ] F. Ferrè , P. Clote BTW: a web server for Boltzmann time warping of gene expression time series. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:482-485 [Journal ] David Montaner , Joaquín Tárraga , Jaime Huerta-Cepas , Jordi Burguet , Juan M. Vaquerizas , Lucía Conde , Pablo Minguez , Javier Vera , Sach Mukherjee , Joan Valls , Miguel A. G. Pujana , Eva Alloza , Javier Herrero , Fátima Al-Shahrour , Joaquín Dopazo Next station in microarray data analysis: GEPAS. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:486-491 [Journal ] Yu-Peng Wang , Liang Liang , Bu-Cong Han , Yu Quan , Xiao Wang , Tao Tao , Zhi-Liang Ji GEPS: the Gene Expression Pattern Scanner. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:492-497 [Journal ] Johannes Rainer , Fatima Sanchez-Cabo , Gernot Stocker , Alexander Sturn , Zlatko Trajanoski CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:498-503 [Journal ] Iain W. Manfield , Chih-Hung Jen , John W. Pinney , Ioannis Michalopoulos , James R. Bradford , Philip M. Gilmartin , David R. Westhead Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:504-509 [Journal ] Maurice Scheer , Frank Klawonn , Richard Münch , Andreas Grote , Karsten Hiller , Claudia Choi , Ina Koch , Max Schobert , Elisabeth Härtig , Ulrich Klages , Dieter Jahn JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:510-515 [Journal ] Jeffrey G. Mandell , Carlos F. Barbas III Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:516-523 [Journal ] Ian John Donaldson , Berthold Göttgens TFBScluster web server for the identification of mammalian composite regulatory elements. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:524-528 [Journal ] Jan Grau , Irad E. Ben-Gal , Stefan Posch , Ivo Grosse VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:529-533 [Journal ] Matti Kankainen , Petri Pehkonen , Päivi Rosenstöm , Petri Törönen , Garry Wong , Liisa Holm POXO: a web-enabled tool series to discover transcription factor binding sites. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:534-540 [Journal ] T. Waleev , D. Shtokalo , Tatiana Konovalova , Nico Voss , Evgeny Cheremushkin , P. Stegmaier , Olga V. Kel-Margoulis , Edgar Wingender , Alexander E. Kel Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:541-545 [Journal ] Thomas Fiedler , Marc Rehmsmeier jPREdictor: a versatile tool for the prediction of cis -regulatory elements. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:546-550 [Journal ] Xuwo Ji , Wei Li , Jun Song , Liping Wei , X. Shirley Liu CEAS: cis -regulatory element annotation system. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:551-554 [Journal ] Saurabh Sinha , Yupu Liang , Eric D. Siggia Stubb: a program for discovery and analysis of cis -regulatory modules. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:555-559 [Journal ] Peter Luykx , Ivan V. Bajic , Sawsan Khuri NXSensor web tool for evaluating DNA for nucleosome exclusion sequences and accessibility to binding factors. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:560-565 [Journal ] Giulio Pavesi , Paolo Mereghetti , Federico Zambelli , Marco Stefani , Giancarlo Mauri , Graziano Pesole MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:566-570 [Journal ] Chun-Chi Liu , Chin-Chung Lin , Wen-Shyen E. Chen , Hsuan-Yu Chen , Pei-Chun Chang , Jeremy J. W. Chen , Pan-Chyr Yang CRSD: a comprehensive web server for composite regulatory signature discovery. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:571-577 [Journal ] Aurélie Lardenois , Frédéric Chalmel , Laurent Bianchetti , José-Alain Sahel , Thierry Léveillard , Olivier Poch PromAn: an integrated knowledge-based web server dedicated to promoter analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:578-583 [Journal ] Sarita Ranjan , Jayashree Seshadri , Vaibhav Vindal , Sailu Yellaboina , Akash Ranjan iCR: a web tool to identify conserved targets of a regulatory protein across the multiple related prokaryotic species. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:584-587 [Journal ] Maike Tech , Burkhard Morgenstern , Peter Meinicke TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:588-590 [Journal ] Igor V. Deyneko , Björn Bredohl , Daniel Wesely , Yulia M. Kalybaeva , Alexander E. Kel , Helmut Blöcker , Gerhard Kauer FeatureScan: revealing property-dependent similarity of nucleotide sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:591-595 [Journal ] Timo Lassmann , Erik L. L. Sonnhammer Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:596-599 [Journal ] Sébastien Moretti , Frédéric Reinier , Olivier Poirot , Fabrice Armougom , Stéphane Audic , Vladimir Keduas , Cédric Notredame PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:600-603 [Journal ] Fabrice Armougom , Sébastien Moretti , Olivier Poirot , Stéphane Audic , Pierre Dumas , Basile Schaeli , Vladimir Keduas , Cédric Notredame Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:604-608 [Journal ] Mikita Suyama , David Torrents , Peer Bork PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:609-612 [Journal ] Neil C. Jones , Degui Zhi , Benjamin J. Raphael AliWABA: alignment on the web through an A-Bruijn approach. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:613-616 [Journal ] Fei Fang , Mathieu Blanchette FootPrinter3: phylogenetic footprinting in partially alignable sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:617-620 [Journal ] Lucía Conde , Juan M. Vaquerizas , Hernán Dopazo , Leonardo Arbiza , Joke Reumers , Frederic Rousseau , Joost Schymkowitz , Joaquín Dopazo PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:621-625 [Journal ] Purvesh Khatri , Valmik Desai , Adi L. Tarca , Sivakumar Sellamuthu , Derek E. Wildman , Roberto Romero , Sorin Draghici New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:626-631 [Journal ] Sònia Casillas , Antonio Barbadilla PDA v.2: improving the exploration and estimation of nucleotide polymorphism in large datasets of heterogeneous DNA. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:632-634 [Journal ] Hsiang-Yu Yuan , Jen-Jie Chiou , Wen-Hsien Tseng , Chia-Hung Liu , Chuan-Kun Liu , Yi-Jung Lin , Hui-Hung Wang , Adam Yao , Yuan-Tsong Chen , Chun-Nan Hsu FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:635-641 [Journal ] Areum Han , Hyo Jin Kang , Yoobok Cho , Sunghoon Lee , Young Joo Kim , Sungsam Gong SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:642-644 [Journal ] Paul D. Thomas , Anish Kejariwal , Nan Guo , Huaiyu Mi , Michael J. Campbell , Anushya Muruganujan , Betty Lazareva-Ulitsky Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:645-650 [Journal ] Reidar Andreson , Tarmo Puurand , Maido Remm SNPmasker: automatic masking of SNPs and repeats across eukaryotic genomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:651-655 [Journal ] Erica G. Jewell , Andrew Robinson , David Savage , Timothy A. Erwin , Christopher G. Love , Geraldine A. C. Lim , Xi Li , Jacqueline Batley , German C. Spangenberg , David Edwards SSRPrimer and SSR Taxonomy Tree : Biome SSR discovery. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:656-659 [Journal ] Fengxia Yao , Ruifang Zhang , Zanhua Zhu , Kun Xia , Chunyu Liu MutScreener: primer design tool for PCR-direct sequencing. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:660-664 [Journal ] Tomoyuki Yamada , Haruhiko Soma , Shinichi Morishita PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:665-669 [Journal ] Jakob Fredslund , Lene H. Madsen , Birgit K. Hougaard , Niels Sandal , Jens Stougaard , David Bertioli , Leif Schauser GeMprospector - online design of cross-species genetic marker candidates in legumes and grasses. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:670-675 [Journal ] Oleg Kikin , Lawrence D'Antonio , Paramjeet Bagga QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:676-682 [Journal ] Vinod Scaria , Manoj Hariharan , Amit Arora , Souvik Maiti Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:683-685 [Journal ] Feng Gao , Chun-Ting Zhang GC-Profile: a web-based tool for visualizing and analyzing the variation of GC content in genomic sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:686-691 [Journal ] Philipp W. Messer , Peter F. Arndt CorGen - measuring and generating long-range correlations for DNA sequence analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:692-695 [Journal ] Ying Chih Lin , Chin Lung Lu , Ying-Chuan Liu , Chuan Yi Tang SPRING: a tool for the analysis of genome rearrangement using reversals and block-interchanges. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:696-699 [Journal ] David Posada ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:700-703 [Journal ] Jörg Schultz , Tobias Müller , Marco Achtziger , Philipp N. Seibel , Thomas Dandekar , Matthias Wolf The internal transcribed spacer 2 database - a web server for (not only) low level phylogenetic analyses. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:704-707 [Journal ] Gábor Tóth , Gábor Deák , Endre Barta , György B. Kiss PLOTREP: a web tool for defragmentation and visual analysis of dispersed genomic repeats. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:708-713 [Journal ] Luca Pireddu , Duane Szafron , Paul Lu , Russell Greiner The Path-A metabolic pathway prediction web server. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:714-719 [Journal ] Jianmin Wu , Xizeng Mao , Tao Cai , Jingchu Luo , Liping Wei KOBAS server: a web-based platform for automated annotation and pathway identification. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:720-724 [Journal ] Christopher Hyland , John W. Pinney , Glenn A. McConkey , David R. Westhead metaSHARK: a WWW platform for interactive exploration of metabolic networks. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:725-728 [Journal ] Duncan Hull , Katy Wolstencroft , Robert Stevens , Carole A. Goble , Matthew R. Pocock , Peter Li , Tom Oinn Taverna: a tool for building and running workflows of services. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:729-732 [Journal ] Alexander Loß , Roland Stenutz , Eberhard Schwarzer , Claus-Wilhelm von der Lieth GlyNest and CASPER: two independent approaches to estimate 1 H and 13 C NMR shifts of glycans available through a common web-interface. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:733-737 [Journal ] Maria A. Miteva , Stephanie Violas , Matthieu Montes , David Gomez , Pierre Tufféry , Bruno O. Villoutreix FAF-Drugs: free ADME/tox filtering of compound collections. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:738-744 [Journal ] Alfred D. Eaton HubMed: a web-based biomedical literature search interface. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:745-747 [Journal ] Uma Mudunuri , Robert Stephens , David Bruining , David Liu , Frank J. Lebeda botXminer: mining biomedical literature with a new web-based application. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:748-752 [Journal ]