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Nucleic Acids Research
2006, volume: 34, number: Web-Server-Issue


  1. Editorial. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:1- [Journal]
  2. Joanne A. Fox, Scott McMillan, B. F. Francis Ouellette
    A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:3-5 [Journal]
  3. Jian Ye, Scott McGinnis, Thomas L. Madden
    BLAST: improvements for better sequence analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:6-9 [Journal]
  4. Jeanette Tångrot, Lixiao Wang, Bo Kågström, Uwe H. Sauer
    FISH - family identification of sequence homologues using structure anchored hidden Markov models. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:10-14 [Journal]
  5. Markus Rampp, Thomas Soddemann, Hermann Lederer
    The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:15-19 [Journal]
  6. Hanjo Täubig, Arno Buchner, Jan Griebsch
    PAST: fast structure-based searching in the PDB. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:20-23 [Journal]
  7. Yuko Tsuchiya, Kengo Kinoshita, Nobutoshi Ito, Haruki Nakamura
    PreBI: prediction of biological interfaces of proteins in crystals. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:20-24 [Journal]
  8. Lee-Wei Yang, A. J. Rader, Xiong Liu, Christopher Jon Jursa, Shann-Ching Chen, Hassan A. Karimi, Ivet Bahar
    oGNM: online computation of structural dynamics using the Gaussian Network Model. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:24-31 [Journal]
  9. Z. R. Li, H. H. Lin, L. Y. Han, L. Jiang, X. Chen, Y. Z. Chen
    PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:32-37 [Journal]
  10. Cyril Azuara, Erik Lindahl, Patrice Koehl, Henri Orland, Marc Delarue
    PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:38-42 [Journal]
  11. Alexander A. Kantardjiev, Boris P. Atanasov
    PHEPS: web-based pH-dependent Protein Electrostatics Server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:43-47 [Journal]
  12. Barbara M. Tynan-Connolly, Jens Erik Nielsen
    pKD: re-designing protein pKa values. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:48-51 [Journal]
  13. Erik Lindahl, Cyril Azuara, Patrice Koehl, Marc Delarue
    NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:52-56 [Journal]
  14. Yunho Jang, Jay I. Jeong, Moon K. Kim
    UMMS: constrained harmonic and anharmonic analyses of macromolecules based on elastic network models. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:57-62 [Journal]
  15. Mark V. Berjanskii, Stephen Neal, David S. Wishart
    PREDITOR: a web server for predicting protein torsion angle restraints. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:63-69 [Journal]
  16. M. Michael Gromiha, A. Mary Thangakani, Samuel Selvaraj
    FOLD-RATE: prediction of protein folding rates from amino acid sequence. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:70-74 [Journal]
  17. Jean-Christophe Gelly, Catherine Etchebest, Serge A. Hazout, Alexandre G. de Brevern
    Protein Peeling 2: a web server to convert protein structures into series of protein units. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:75-78 [Journal]
  18. Razif R. Gabdoulline, S. Ulbrich, S. Richter, Rebecca C. Wade
    ProSAT2 - Protein Structure Annotation Server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:79-83 [Journal]
  19. Rasmus Wernersson, Kristoffer Rapacki, Hans Henrik Stærfeldt, Peter Wad Sackett, Anne Mølgaard
    FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:84-88 [Journal]
  20. Jui-Hung Hung, Hsien-Da Huang, Tzong-Yi Lee
    ProKware: integrated software for presenting protein structural properties in protein tertiary structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:89-94 [Journal]
  21. Edward S. C. Shih, Ruei-chi R. Gan, Ming-Jing Hwang
    OPAAS: a web server for optimal, permuted, and other alternative alignments of protein structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:95-98 [Journal]
  22. Sunghoon Lee, Byungwook Lee, Insoo Jang, Sangsoo Kim, Jong Bhak
    Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:99-103 [Journal]
  23. Blaise T. F. Alako, Daphne Rainey, Harm Nijveen, Jack A. M. Leunissen
    TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:104-109 [Journal]
  24. Angel Carro, Michael L. Tress, David de Juan, Florencio Pazos, Pedro Lopez-Romero, Antonio del Sol, Alfonso Valencia, Ana María Rojas
    TreeDet: a web server to explore sequence space. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:110-115 [Journal]
  25. Joe Dundas, Zheng Ouyang, Jeffery Tseng, T. Andrew Binkowski, Yaron Turpaz, Jie Liang
    CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:116-118 [Journal]
  26. M. Tyagi, P. Sharma, C. S. Swamy, F. Cadet, N. Srinivasan, Alexandre G. de Brevern, B. Offmann
    Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:119-123 [Journal]
  27. Shandar Ahmad, Hidetoshi Kono, Marcos J. Araúzo-Bravo, Akinori Sarai
    ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:124-127 [Journal]
  28. K. Sumathi, P. Ananthalakshmi, M. N. A. Md. Roshan, Krishna Sekar
    3dSS: 3D structural superposition. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:128-132 [Journal]
  29. Hatice Gulcin Ozer, William C. Ray
    MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:133-136 [Journal]
  30. Johannes Söding, Michael Remmert, Andreas Biegert
    HHrep: de novo protein repeat detection and the origin of TIM barrels. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:137-142 [Journal]
  31. R. Bhadra, S. Sandhya, K. R. Abhinandan, Saikat Chakrabarti, Ramanathan Sowdhamini, N. Srinivasan
    Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:143-146 [Journal]
  32. Julien Maupetit, R. Gautier, Pierre Tufféry
    SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:147-151 [Journal]
  33. Chih-Chieh Chen, Jenn-Kang Hwang, Jinn-Moon Yang
    (PS)2: protein structure prediction server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:152-157 [Journal]
  34. Lusheng Chen, Wei Wang, Shaoping Ling, Caiyan Jia, Fei Wang
    KemaDom: a web server for domain prediction using kernel machine with local context. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:158-163 [Journal]
  35. Alessandro Vullo, Oscar Bortolami, Gianluca Pollastri, Silvio C. E. Tosatto
    Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:164-168 [Journal]
  36. Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
    PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:169-172 [Journal]
  37. Narcis Fernandez-Fuentes, Jun Zhai, András Fiser
    ArchPRED: a template based loop structure prediction server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:173-176 [Journal]
  38. Alessio Ceroni, Andrea Passerini, Alessandro Vullo, Paolo Frasconi
    DISULFIND: a disulfide bonding state and cysteine connectivity prediction server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:177-181 [Journal]
  39. F. Ferrè, P. Clote
    DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:182-185 [Journal]
  40. Henry R. Bigelow, Burkhard Rost
    PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:186-188 [Journal]
  41. Jérôme Waldispühl, Bonnie Berger, Peter Clote, Jean-Marc Steyaert
    transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:189-193 [Journal]
  42. Pierre Dönnes, Oliver Kohlbacher
    SVMHC: a server for prediction of MHC-binding peptides. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:194-197 [Journal]
  43. Tun-Wen Pai, Margaret Dah-Tsyr Chang, Wen-Shyong Tzou, Bo-Han Su, Pei-Chih Wu, Hao-Teng Chang, Wei-I Chou
    REMUS: a tool for identification of unique peptide segments as epitopes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:198-201 [Journal]
  44. Sudipto Saha, G. P. S. Raghava
    AlgPred: prediction of allergenic proteins and mapping of IgE epitopes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:202-209 [Journal]
  45. Chittibabu Guda
    pTARGET: a web server for predicting protein subcellular localization. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:210-213 [Journal]
  46. Maria Novatchkova, Georg Schneider, Richard Fritz, Frank Eisenhaber, Alexander Schleiffer
    DOUTfinder - identification of distant domain outliers using subsignificant sequence similarity. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:214-218 [Journal]
  47. Honglin Li, Zhenting Gao, Ling Kang, Hailei Zhang, Kun Yang, Kunqian Yu, Xiaomin Luo, Weiliang Zhu, Kaixian Chen, Jianhua Shen, Xicheng Wang, Hualiang Jiang
    TarFisDock: a web server for identifying drug targets with docking approach. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:219-224 [Journal]
  48. Ana P. C. Rodrigues, Barry J. Grant, Roderick E. Hubbard
    sgTarget: a target selection resource for structural genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:225-230 [Journal]
  49. Ganesan Pugalenthi, K. Shameer, N. Srinivasan, Ramanathan Sowdhamini
    HARMONY: a server for the assessment of protein structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:231-234 [Journal]
  50. Yi Liu, Brian Kuhlman
    RosettaDesign server for protein design. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:235-238 [Journal]
  51. Vijaya Parthiban, M. Michael Gromiha, Dietmar Schomburg
    CUPSAT: prediction of protein stability upon point mutations. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:239-242 [Journal]
  52. Liangjiang Wang, Susan J. Brown
    BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:243-248 [Journal]
  53. Hu Chen, Yu Xue, Ni Huang, Xuebiao Yao, Zhirong Sun
    MeMo: a web tool for prediction of protein methylation modifications. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:249-253 [Journal]
  54. Yu Xue, Fengfeng Zhou, Chuanhai Fu, Ying Xu, Xuebiao Yao
    SUMOsp: a web server for sumoylation site prediction. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:254-257 [Journal]
  55. Sangtae Kim, Seungjin Na, Ji Woong Sim, Heejin Park, Jaeho Jeong, Hokeun Kim, Younghwan Seo, Jawon Seo, Kong-Joo Lee, Eunok Paek
    MODi : a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:258-263 [Journal]
  56. Nagarajan Harish, Rekha Gupta, Parul Agarwal, Vinod Scaria, Beena Pillai
    DyNAVacS: an integrative tool for optimized DNA vaccine design. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:264-266 [Journal]
  57. Bruce R. Southey, Andinet Amare, Tyler A. Zimmerman, Sandra L. Rodriguez-Zas, Jonathan V. Sweedler
    NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:267-272 [Journal]
  58. Anne de Jong, Sacha A. F. T. van Hijum, Jetta J. E. Bijlsma, Jan Kok, Oscar P. Kuipers
    BAGEL: a web-based bacteriocin genome mining tool. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:273-279 [Journal]
  59. Shu Ju Hsieh, Chun-Yuan Lin, Ning Han Liu, Wei Yuan Chow, Chuan Yi Tang
    GeneAlign: a coding exon prediction tool based on phylogenetical comparisons. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:280-284 [Journal]
  60. Simona Rossi, Daniele Masotti, Christine Nardini, Elena Bonora, Giovanni Romeo, Enrico Macii, Luca Benini, Stefano Volinia
    TOM: a web-based integrated approach for identification of candidate disease genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:285-292 [Journal]
  61. Jia Ye, Lin Fang, Hongkun Zheng, Yong Zhang, Jie Chen, Zengjin Zhang, Jing Wang, Shengting Li, Ruiqiang Li, Lars Bolund, Jun Wang
    WEGO: a web tool for plotting GO annotations. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:293-297 [Journal]
  62. Carlos Prieto, Javier De Las Rivas
    APID: Agile Protein Interaction DataAnalyzer. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:298-302 [Journal]
  63. Darby Tien-Hau Chang, Yi-Zhong Weng, Jung-Hsin Lin, Ming-Jing Hwang, Yen-Jen Oyang
    Protemot: prediction of protein binding sites with automatically extracted geometrical templates. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:303-309 [Journal]
  64. Andrey Tovchigrechko, Ilya A. Vakser
    GRAMM-X public web server for protein-protein docking. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:310-314 [Journal]
  65. José M. G. Izarzugaza, David Juan, Carles Pons, Juan A. G. Ranea, Alfonso Valencia, Florencio Pazos
    TSEMA: interactive prediction of protein pairings between interacting families. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:315-319 [Journal]
  66. Laetitia Martin, Vincent Catherinot, Gilles Labesse
    kinDOCK: a tool for comparative docking of protein kinase ligands. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:325-329 [Journal]
  67. Christopher J. Penkett, James A. Morris, Valerie Wood, Jürg Bähler
    YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:330-334 [Journal]
  68. Andreas Biegert, Christian Mayer, Michael Remmert, Johannes Söding, Andrei N. Lupas
    The MPI Bioinformatics Toolkit for protein sequence analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:335-339 [Journal]
  69. Naveed Massjouni, Corban G. Rivera, T. M. Murali
    VIRGO: computational prediction of gene functions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:340-344 [Journal]
  70. Chisato Yamasaki, Hiroaki Kawashima, Fusano Todokoro, Yasuhiro Imamizu, Makoto Ogawa, Motohiko Tanino, Takeshi Itoh, Takashi Gojobori, Tadashi Imanishi
    TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:345-349 [Journal]
  71. Victor Neduva, Robert B. Russell
    DILIMOT: discovery of linear motifs in proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:350-355 [Journal]
  72. Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu
    MAGIIC-PRO: detecting functional signatures by efficient discovery of long patterns in protein sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:356-361 [Journal]
  73. Edouard De Castro, Christian J. A. Sigrist, Alexandre Gattiker, Virginie Bulliard, Petra S. Langendijk-Genevaux, Elisabeth Gasteiger, Amos Bairoch, Nicolas Hulo
    ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:362-365 [Journal]
  74. Shane Neph, Martin Tompa
    MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:366-368 [Journal]
  75. Timothy L. Bailey, Nadya Williams, Chris Misleh, Wilfred W. Li
    MEME: discovering and analyzing DNA and protein sequence motifs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:369-373 [Journal]
  76. Johannes Söding, Michael Remmert, Andreas Biegert, Andrei N. Lupas
    HHsenser: exhaustive transitive profile search using HMM-HMM comparison. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:374-378 [Journal]
  77. Iddo Friedberg, Tim Harder, Adam Godzik
    JAFA: a protein function annotation meta-server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:379-381 [Journal]
  78. Han Liang, Weihua Zhou, Laura F. Landweber
    SWAKK: a web server for detecting positive selection in proteins using a sliding window substitution rate analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:382-384 [Journal]
  79. Rasmus Wernersson
    Virtual Ribosome - a comprehensive DNA translation tool with support for integration of sequence feature annotation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:385-388 [Journal]
  80. Federico Abascal, Rafael Zardoya, David Posada
    GenDecoder: genetic code prediction for metazoan mitochondria. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:389-393 [Journal]
  81. T. Z. DeSantis Jr., Philip Hugenholtz, K. Keller, E. L. Brodie, N. Larsen, Y. M. Piceno, R. Phan, G. L. Andersen
    NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:394-399 [Journal]
  82. Tobias Dezulian, Martin Schaefer, Roland Wiese, Detlef Weigel, Daniel H. Huson
    CrossLink: visualization and exploration of sequence relationships between (micro) RNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:400-404 [Journal]
  83. Eckart Bindewald, Thomas D. Schneider, Bruce A. Shapiro
    CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:405-411 [Journal]
  84. Oranit Dror, Ruth Nussinov, Haim J. Wolfson
    The ARTS web server for aligning RNA tertiary structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:412-415 [Journal]
  85. Yanga Byun, Kyungsook Han
    PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:416-422 [Journal]
  86. Tzu-Hao Chang, Hsien-Da Huang, Tzu-Neng Chuang, Dray-Ming Shien, Jorng-Tzong Horng
    RNAMST: efficient and flexible approach for identifying RNA structural homologs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:423-428 [Journal]
  87. Hsi-Yuan Huang, Chia-Hung Chien, Kuan-Hua Jen, Hsien-Da Huang
    RegRNA: an integrated web server for identifying regulatory RNA motifs and elements. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:429-434 [Journal]
  88. Mario Stanke, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, Burkhard Morgenstern
    AUGUSTUS: ab initio prediction of alternative transcripts. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:435-439 [Journal]
  89. Tiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole
    ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:440-443 [Journal]
  90. Durgaprasad Bollina, Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan
    ASGS: an alternative splicing graph web service. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:444-447 [Journal]
  91. Yuki Naito, Kumiko Ui-Tei, Toru Nishikawa, Yutaka Takebe, Kaoru Saigo
    siVirus: web-based antiviral siRNA design software for highly divergent viral sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:448-450 [Journal]
  92. Jan Krüger, Marc Rehmsmeier
    RNAhybrid: microRNA target prediction easy, fast and flexible. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:451-454 [Journal]
  93. Jin-Wu Nam, Jinhan Kim, Sung-Kyu Kim, Byoung-Tak Zhang
    ProMiR II: a web server for the probabilistic prediction of clustered, nonclustered, conserved and nonconserved microRNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:455-458 [Journal]
  94. Ali Masoudi-Nejad, Koichiro Tonomura, Shuichi Kawashima, Yuki Moriya, Masanori Suzuki, Masumi Itoh, Minoru Kanehisa, Takashi Endo, Susumu Goto
    EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:459-462 [Journal]
  95. Ming Zhang, Anne-Kathrin Schultz, Charles Calef, Carla Kuiken, Thomas Leitner, Bette Korber, Burkhard Morgenstern, Mario Stanke
    jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:463-465 [Journal]
  96. Michael Baitaluk, Mayya Sedova, Animesh Ray, Amarnath Gupta
    BiologicalNetworks: visualization and analysis tool for systems biology. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:466-471 [Journal]
  97. Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, David Montaner, Eva Alloza, Juan M. Vaquerizas, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo
    BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:472-476 [Journal]
  98. Stéphane Liva, Philippe Hupé, Pierre Neuvial, Isabel Brito, Eric Viara, Philippe La Rosa, Emmanuel Barillot
    CAPweb: a bioinformatics CGH array Analysis Platform. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:477-481 [Journal]
  99. F. Ferrè, P. Clote
    BTW: a web server for Boltzmann time warping of gene expression time series. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:482-485 [Journal]
  100. David Montaner, Joaquín Tárraga, Jaime Huerta-Cepas, Jordi Burguet, Juan M. Vaquerizas, Lucía Conde, Pablo Minguez, Javier Vera, Sach Mukherjee, Joan Valls, Miguel A. G. Pujana, Eva Alloza, Javier Herrero, Fátima Al-Shahrour, Joaquín Dopazo
    Next station in microarray data analysis: GEPAS. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:486-491 [Journal]
  101. Yu-Peng Wang, Liang Liang, Bu-Cong Han, Yu Quan, Xiao Wang, Tao Tao, Zhi-Liang Ji
    GEPS: the Gene Expression Pattern Scanner. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:492-497 [Journal]
  102. Johannes Rainer, Fatima Sanchez-Cabo, Gernot Stocker, Alexander Sturn, Zlatko Trajanoski
    CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:498-503 [Journal]
  103. Iain W. Manfield, Chih-Hung Jen, John W. Pinney, Ioannis Michalopoulos, James R. Bradford, Philip M. Gilmartin, David R. Westhead
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:504-509 [Journal]
  104. Maurice Scheer, Frank Klawonn, Richard Münch, Andreas Grote, Karsten Hiller, Claudia Choi, Ina Koch, Max Schobert, Elisabeth Härtig, Ulrich Klages, Dieter Jahn
    JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:510-515 [Journal]
  105. Jeffrey G. Mandell, Carlos F. Barbas III
    Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:516-523 [Journal]
  106. Ian John Donaldson, Berthold Göttgens
    TFBScluster web server for the identification of mammalian composite regulatory elements. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:524-528 [Journal]
  107. Jan Grau, Irad E. Ben-Gal, Stefan Posch, Ivo Grosse
    VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:529-533 [Journal]
  108. Matti Kankainen, Petri Pehkonen, Päivi Rosenstöm, Petri Törönen, Garry Wong, Liisa Holm
    POXO: a web-enabled tool series to discover transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:534-540 [Journal]
  109. T. Waleev, D. Shtokalo, Tatiana Konovalova, Nico Voss, Evgeny Cheremushkin, P. Stegmaier, Olga V. Kel-Margoulis, Edgar Wingender, Alexander E. Kel
    Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:541-545 [Journal]
  110. Thomas Fiedler, Marc Rehmsmeier
    jPREdictor: a versatile tool for the prediction of cis-regulatory elements. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:546-550 [Journal]
  111. Xuwo Ji, Wei Li, Jun Song, Liping Wei, X. Shirley Liu
    CEAS: cis-regulatory element annotation system. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:551-554 [Journal]
  112. Saurabh Sinha, Yupu Liang, Eric D. Siggia
    Stubb: a program for discovery and analysis of cis-regulatory modules. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:555-559 [Journal]
  113. Peter Luykx, Ivan V. Bajic, Sawsan Khuri
    NXSensor web tool for evaluating DNA for nucleosome exclusion sequences and accessibility to binding factors. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:560-565 [Journal]
  114. Giulio Pavesi, Paolo Mereghetti, Federico Zambelli, Marco Stefani, Giancarlo Mauri, Graziano Pesole
    MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:566-570 [Journal]
  115. Chun-Chi Liu, Chin-Chung Lin, Wen-Shyen E. Chen, Hsuan-Yu Chen, Pei-Chun Chang, Jeremy J. W. Chen, Pan-Chyr Yang
    CRSD: a comprehensive web server for composite regulatory signature discovery. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:571-577 [Journal]
  116. Aurélie Lardenois, Frédéric Chalmel, Laurent Bianchetti, José-Alain Sahel, Thierry Léveillard, Olivier Poch
    PromAn: an integrated knowledge-based web server dedicated to promoter analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:578-583 [Journal]
  117. Sarita Ranjan, Jayashree Seshadri, Vaibhav Vindal, Sailu Yellaboina, Akash Ranjan
    iCR: a web tool to identify conserved targets of a regulatory protein across the multiple related prokaryotic species. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:584-587 [Journal]
  118. Maike Tech, Burkhard Morgenstern, Peter Meinicke
    TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:588-590 [Journal]
  119. Igor V. Deyneko, Björn Bredohl, Daniel Wesely, Yulia M. Kalybaeva, Alexander E. Kel, Helmut Blöcker, Gerhard Kauer
    FeatureScan: revealing property-dependent similarity of nucleotide sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:591-595 [Journal]
  120. Timo Lassmann, Erik L. L. Sonnhammer
    Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:596-599 [Journal]
  121. Sébastien Moretti, Frédéric Reinier, Olivier Poirot, Fabrice Armougom, Stéphane Audic, Vladimir Keduas, Cédric Notredame
    PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:600-603 [Journal]
  122. Fabrice Armougom, Sébastien Moretti, Olivier Poirot, Stéphane Audic, Pierre Dumas, Basile Schaeli, Vladimir Keduas, Cédric Notredame
    Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:604-608 [Journal]
  123. Mikita Suyama, David Torrents, Peer Bork
    PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:609-612 [Journal]
  124. Neil C. Jones, Degui Zhi, Benjamin J. Raphael
    AliWABA: alignment on the web through an A-Bruijn approach. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:613-616 [Journal]
  125. Fei Fang, Mathieu Blanchette
    FootPrinter3: phylogenetic footprinting in partially alignable sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:617-620 [Journal]
  126. Lucía Conde, Juan M. Vaquerizas, Hernán Dopazo, Leonardo Arbiza, Joke Reumers, Frederic Rousseau, Joost Schymkowitz, Joaquín Dopazo
    PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:621-625 [Journal]
  127. Purvesh Khatri, Valmik Desai, Adi L. Tarca, Sivakumar Sellamuthu, Derek E. Wildman, Roberto Romero, Sorin Draghici
    New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:626-631 [Journal]
  128. Sònia Casillas, Antonio Barbadilla
    PDA v.2: improving the exploration and estimation of nucleotide polymorphism in large datasets of heterogeneous DNA. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:632-634 [Journal]
  129. Hsiang-Yu Yuan, Jen-Jie Chiou, Wen-Hsien Tseng, Chia-Hung Liu, Chuan-Kun Liu, Yi-Jung Lin, Hui-Hung Wang, Adam Yao, Yuan-Tsong Chen, Chun-Nan Hsu
    FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:635-641 [Journal]
  130. Areum Han, Hyo Jin Kang, Yoobok Cho, Sunghoon Lee, Young Joo Kim, Sungsam Gong
    SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:642-644 [Journal]
  131. Paul D. Thomas, Anish Kejariwal, Nan Guo, Huaiyu Mi, Michael J. Campbell, Anushya Muruganujan, Betty Lazareva-Ulitsky
    Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:645-650 [Journal]
  132. Reidar Andreson, Tarmo Puurand, Maido Remm
    SNPmasker: automatic masking of SNPs and repeats across eukaryotic genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:651-655 [Journal]
  133. Erica G. Jewell, Andrew Robinson, David Savage, Timothy A. Erwin, Christopher G. Love, Geraldine A. C. Lim, Xi Li, Jacqueline Batley, German C. Spangenberg, David Edwards
    SSRPrimer and SSR Taxonomy Tree: Biome SSR discovery. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:656-659 [Journal]
  134. Fengxia Yao, Ruifang Zhang, Zanhua Zhu, Kun Xia, Chunyu Liu
    MutScreener: primer design tool for PCR-direct sequencing. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:660-664 [Journal]
  135. Tomoyuki Yamada, Haruhiko Soma, Shinichi Morishita
    PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:665-669 [Journal]
  136. Jakob Fredslund, Lene H. Madsen, Birgit K. Hougaard, Niels Sandal, Jens Stougaard, David Bertioli, Leif Schauser
    GeMprospector - online design of cross-species genetic marker candidates in legumes and grasses. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:670-675 [Journal]
  137. Oleg Kikin, Lawrence D'Antonio, Paramjeet Bagga
    QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:676-682 [Journal]
  138. Vinod Scaria, Manoj Hariharan, Amit Arora, Souvik Maiti
    Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:683-685 [Journal]
  139. Feng Gao, Chun-Ting Zhang
    GC-Profile: a web-based tool for visualizing and analyzing the variation of GC content in genomic sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:686-691 [Journal]
  140. Philipp W. Messer, Peter F. Arndt
    CorGen - measuring and generating long-range correlations for DNA sequence analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:692-695 [Journal]
  141. Ying Chih Lin, Chin Lung Lu, Ying-Chuan Liu, Chuan Yi Tang
    SPRING: a tool for the analysis of genome rearrangement using reversals and block-interchanges. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:696-699 [Journal]
  142. David Posada
    ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:700-703 [Journal]
  143. Jörg Schultz, Tobias Müller, Marco Achtziger, Philipp N. Seibel, Thomas Dandekar, Matthias Wolf
    The internal transcribed spacer 2 database - a web server for (not only) low level phylogenetic analyses. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:704-707 [Journal]
  144. Gábor Tóth, Gábor Deák, Endre Barta, György B. Kiss
    PLOTREP: a web tool for defragmentation and visual analysis of dispersed genomic repeats. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:708-713 [Journal]
  145. Luca Pireddu, Duane Szafron, Paul Lu, Russell Greiner
    The Path-A metabolic pathway prediction web server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:714-719 [Journal]
  146. Jianmin Wu, Xizeng Mao, Tao Cai, Jingchu Luo, Liping Wei
    KOBAS server: a web-based platform for automated annotation and pathway identification. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:720-724 [Journal]
  147. Christopher Hyland, John W. Pinney, Glenn A. McConkey, David R. Westhead
    metaSHARK: a WWW platform for interactive exploration of metabolic networks. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:725-728 [Journal]
  148. Duncan Hull, Katy Wolstencroft, Robert Stevens, Carole A. Goble, Matthew R. Pocock, Peter Li, Tom Oinn
    Taverna: a tool for building and running workflows of services. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:729-732 [Journal]
  149. Alexander Loß, Roland Stenutz, Eberhard Schwarzer, Claus-Wilhelm von der Lieth
    GlyNest and CASPER: two independent approaches to estimate 1H and 13C NMR shifts of glycans available through a common web-interface. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:733-737 [Journal]
  150. Maria A. Miteva, Stephanie Violas, Matthieu Montes, David Gomez, Pierre Tufféry, Bruno O. Villoutreix
    FAF-Drugs: free ADME/tox filtering of compound collections. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:738-744 [Journal]
  151. Alfred D. Eaton
    HubMed: a web-based biomedical literature search interface. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:745-747 [Journal]
  152. Uma Mudunuri, Robert Stephens, David Bruining, David Liu, Frank J. Lebeda
    botXminer: mining biomedical literature with a new web-based application. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:748-752 [Journal]
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