Journals in DBLP
Alex Bateman Editorial. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:1- [Journal ] Dov Greenbaum , Andrew Smith , Mark Gerstein Editorial. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:3-4 [Journal ] Michael Y. Galperin The Molecular Biology Database Collection: 2005 update. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:5-24 [Journal ] Yoshio Tateno , Naruya Saitou , Kousaku Okubo , Hideaki Sugawara , Takashi Gojobori DDBJ in collaboration with mass-sequencing teams on annotation. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:25-28 [Journal ] Carola Kanz , Philippe Aldebert , Nicola Althorpe , Wendy Baker , Alastair Baldwin , Kirsty Bates , Paul Browne , Alexandra van den Broek , Matias Castro , Guy Cochrane , Karyn Duggan , Ruth Eberhardt , Nadeem Faruque , John Gamble , Federico Garcia Diez , Nicola Harte , Tamara Kulikova , Quan Lin , Vincent Lombard , Rodrigo Lopez , Renato Mancuso , Michelle McHale , Francesco Nardone , Ville Silventoinen , Siamak Sobhany , Peter Stoehr , Mary Ann Tuli , Katerina Tzouvara , Robert Vaughan , Dan Wu , Weimin Zhu , Rolf Apweiler The EMBL Nucleotide Sequence Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:29-33 [Journal ] Dennis A. Benson , Ilene Karsch-Mizrachi , David J. Lipman , James Ostell , David L. Wheeler GenBank. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:34-38 [Journal ] David L. Wheeler , Tanya Barrett , Dennis A. Benson , Stephen H. Bryant , Kathi Canese , Deanna M. Church , Michael DiCuccio , Ron Edgar , Scott Federhen , Wolfgang Helmberg , David L. Kenton , Oleg Khovayko , David J. Lipman , Thomas L. Madden , Donna R. Maglott , James Ostell , Joan U. Pontius , Kim D. Pruitt , Gregory D. Schuler , Lynn M. Schriml , Edwin Sequeira , Steven T. Sherry , Karl Sirotkin , Grigory Starchenko , Tugba O. Suzek , Roman L. Tatusov , Tatiana A. Tatusova , Lukas Wagner , Eugene Yaschenko Database resources of the National Center for Biotechnology Information. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:39-45 [Journal ] Catherine Brooksbank , Graham Cameron , Janet M. Thornton The European Bioinformatics Institute's data resources: towards systems biology. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:46-53 [Journal ] Donna R. Maglott , James Ostell , Kim D. Pruitt , Tatiana A. Tatusova Entrez Gene: gene-centered information at NCBI. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:54-58 [Journal ] Adel Khelifi , Laurent Duret , Dominique Mouchiroud HOPPSIGEN: a database of human and mouse processed pseudogenes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:59-66 [Journal ] Victor G. Levitsky , Aleksey V. Katokhin , Olga A. Podkolodnaya , Dagmara P. Furman , Nikolay A. Kolchanov NPRD: Nucleosome Positioning Region Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:67-70 [Journal ] Yuandan Lee , Jennifer Tsai , S. Sunkara , Svetlana Karamycheva , Geo Pertea , Razvan Sultana , Valentin Antonescu , A. Chan , Foo Cheung , John Quackenbush The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:71-74 [Journal ] Pora Kim , Namshin Kim , Younghee Lee , Bumjin Kim , Youngah Shin , Sanghyuk Lee ECgene: genome annotation for alternative splicing. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:75-79 [Journal ] Hsien-Da Huang , Jorng-Tzong Horng , Feng-Mao Lin , Yu-Chung Chang , Chen-Chia Huang SpliceInfo: an information repository for mRNA alternative splicing in human genome. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:80-85 [Journal ] Endre Barta , Endre Sebestyén , Tamás B. Pálfy , Gábor Tóth , Csaba P. Ortutay , László Patthy DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:86-90 [Journal ] Voichita D. Marinescu , Isaac S. Kohane , Alberto Riva The MAPPER database: a multi-genome catalog of putative transcription factor binding sites. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:91-97 [Journal ] Abel D. González , Vladimir Espinosa , Ana Tereza R. Vasconcelos , Ernesto Pérez-Rueda , Julio Collado-Vides TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:98-102 [Journal ] Fang Zhao , Zhenyu Xuan , Lihua Liu , Michael Q. Zhang TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:103-107 [Journal ] Matthias Truss , Maciej Swat , Szymon M. Kielbasa , Reinhold Schäfer , Hanspeter Herzel , Christian Hagemeier HuSiDa - the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:108-111 [Journal ] Changning Liu , Baoyan Bai , Geir Skogerbø , Lun Cai , Wei Deng , Yong Zhang , Dongbo Bu , Yi Zhao , Runsheng Chen NONCODE: an integrated knowledge database of non-coding RNAs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:112-115 [Journal ] Haibo Zhang , Jun Hu , Michael Recce , Bin Tian PolyA_DB: a database for mammalian mRNA polyadenylation. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:116-120 [Journal ] Sam Griffiths-Jones , Simon Moxon , Mhairi Marshall , Ajay Khanna , Sean R. Eddy , Alex Bateman Rfam: annotating non-coding RNAs in complete genomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:121-124 [Journal ] Ken C. Pang , Stuart Stephen , Pär G. Engström , Khairina Tajul-Arifin , Weisan Chen , Claes Wahlestedt , Boris Lenhard , Yoshihide Hayashizaki , John S. Mattick RNAdb - a comprehensive mammalian noncoding RNA database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:125-130 [Journal ] Alistair M. Chalk , Richard E. Warfinge , Patrick Georgii-Hemming , Erik L. L. Sonnhammer siRNAdb: a database of siRNA sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:131-134 [Journal ] James A. McCloskey , Jef Rozenski The Small Subunit rRNA Modification Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:135-138 [Journal ] Mathias Sprinzl , Konstantin S. Vassilenko Compilation of tRNA sequences and sequences of tRNA genes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:139-140 [Journal ] Flavio Mignone , Giorgio Grillo , Flavio Licciulli , Michele Iacono , Sabino Liuni , Paul Kersey , Jorge Duarte , Cecilia Saccone , Graziano Pesole UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:141-146 [Journal ] Paul Lu , Duane Szafron , Russell Greiner , David S. Wishart , Alona Fyshe , Brandon Pearcy , Brett Poulin , Roman Eisner , Danny Ngo , Nicholas Lamb PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:147-153 [Journal ] Amos Bairoch , Rolf Apweiler , Cathy H. Wu , Winona C. Barker , Brigitte Boeckmann , Serenella Ferro , Elisabeth Gasteiger , Hongzhan Huang , Rodrigo Lopez , Michele Magrane , María J. Martín , Darren A. Natale , Claire O'Donovan , Nicole Redaschi , Lai-Su L. Yeh The Universal Protein Resource (UniProt). [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:154-159 [Journal ] Sven Mika , Burkhard Rost NMPdb: Database of Nuclear Matrix Proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:160-163 [Journal ] Sébastien Rey , Michael Acab , Jennifer L. Gardy , Matthew R. Laird , Katalin de Fays , Christophe G. Lambert , Fiona S. L. Brinkman PSORTdb: a protein subcellular localization database for bacteria. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:164-168 [Journal ] Yunjia Chen , Yong Zhang , Yanbin Yin , Ge Gao , Songgang Li , Ying Jiang , Xiaocheng Gu , Jingchu Luo SPD - a web-based secreted protein database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:169-173 [Journal ] Ya-Hui Chang , Wen-Hui Su , Tso-Ching Lee , Hsiao-Fang Sunny Sun , Chia-Hsiang Chen , Wen-Harn Pan , Shih-Feng Tsai , Yuh-Shan Jou TPMD: a database and resources of microsatellite marker genotyped in Taiwanese populations. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:174-177 [Journal ] Qiaojuan Jane Su , Lin Lu , Serge Saxonov , Douglas L. Brutlag eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:178-182 [Journal ] Vladimir A. Ivanisenko , Sergey S. Pintus , Dmitry A. Grigorovich , Nikolay A. Kolchanov PDBSite: a database of the 3D structure of protein functional sites. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:183-187 [Journal ] Andreas Heger , Christopher Andrew Wilton , Ashwin Sivakumar , Liisa Holm ADDA: a domain database with global coverage of the protein universe. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:188-191 [Journal ] Aron Marchler-Bauer , John B. Anderson , Praveen F. Cherukuri , Carol DeWeese-Scott , Lewis Y. Geer , Marc Gwadz , Siqian He , David I. Hurwitz , John D. Jackson , Zhaoxi Ke , Christopher J. Lanczycki , Cynthia A. Liebert , Chunlei Liu , Fu Lu , Gabriele H. Marchler , Mikhail Mullokandov , Benjamin A. Shoemaker , Vahan Simonyan , James S. Song , Paul A. Thiessen , Roxanne A. Yamashita , Jodie J. Yin , Dachuan Zhang , Stephen H. Bryant CDD: a Conserved Domain Database for protein classification. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:192-196 [Journal ] Saraswathi Abhiman , Erik L. L. Sonnhammer FunShift: a database of function shift analysis on protein subfamilies. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:197-200 [Journal ] Nicola J. Mulder , Rolf Apweiler , Teresa K. Attwood , Amos Bairoch , Alex Bateman , David Binns , Paul Bradley , Peer Bork , Phillip Bucher , Lorenzo Cerutti , Richard R. Copley , Emmanuel Courcelle , Ujjwal Das , Richard Durbin , Wolfgang Fleischmann , Julian Gough , Daniel H. Haft , Nicola Harte , Nicolas Hulo , Daniel Kahn , Alexander Kanapin , Maria Krestyaninova , David Lonsdale , Rodrigo Lopez , Ivica Letunic , Martin Madera , John Maslen , Jennifer McDowall , Alex Mitchell , Anastasia N. Nikolskaya , Sandra E. Orchard , Marco Pagni , Chris P. Ponting , Emmanuel Quevillon , Jeremy D. Selengut , Christian J. A. Sigrist , Ville Silventoinen , David J. Studholme , Robert Vaughan , Cathy H. Wu InterPro, progress and status in 2005. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:201-205 [Journal ] Shu-Hsien Sheu , David R. Lancia Jr. , Karl H. Clodfelter , Melissa R. Landon , Sandor Vajda PRECISE: a Database of Predicted and Consensus Interaction Sites in Enzymes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:206-211 [Journal ] Catherine Bru , Emmanuel Courcelle , Sébastien Carrère , Yoann Beausse , Sandrine Dalmar , Daniel Kahn The ProDom database of protein domain families: more emphasis on 3D. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:212-215 [Journal ] Noam Kaplan , Ori Sasson , Uri Inbar , Moriah Friedlich , Menachem Fromer , Hillel Fleischer , Elon Portugaly , Nathan Linial , Michal Linial ProtoNet 4.0: A hierarchical classification of one million protein sequences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:216-218 [Journal ] James A. Casbon , Mansoor A. S. Saqi S4: structure-based sequence alignments of SCOP superfamilies. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:219-222 [Journal ] Kristian Vlahovicek , László Kaján , Vilmos Ágoston , Sándor Pongor The SBASE domain sequence resource, release 12: prediction of protein domain-architecture using support vector machines. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:223-225 [Journal ] Thomas Meinel , Antje Krause , Hannes Luz , Martin Vingron , Eike Staub The SYSTERS Protein Family Database in 2005. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:226-229 [Journal ] Richard J. Roberts , Tamas Vincze , Janos Posfai , Dana Macelis REBASE - restriction enzymes and DNA methyltransferases. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:230-232 [Journal ] Nita Deshpande , Kenneth J. Addess , Wolfgang Bluhm , Jeffrey C. Merino-Ott , Wayne Townsend-Merino , Qing Zhang , Charlie Knezevich , Lie Xie , Li Chen , Zukang Feng , Rachel Kramer Green , Judith L. Flippen-Anderson , John D. Westbrook , Helen M. Berman , Philip E. Bourne The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:233-237 [Journal ] Jae-Min Shin , Doo-Ho Cho PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:238-241 [Journal ] Thomas Lütteke , Martin Frank , Claus-Wilhelm von der Lieth Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:242-246 [Journal ] Frances M. G. Pearl , Annabel E. Todd , Ian Sillitoe , Mark Dibley , Oliver Redfern , Tony E. Lewis , Christopher Bennett , Russell L. Marsden , Alastair Grant , David Lee , Adrian Akpor , Michael Maibaum , Andrew P. Harrison , Timothy Dallman , Gabrielle A. Reeves , Ilhem Diboun , Sarah Addou , Stefano Lise , Caroline Johnston , Antonio Sillero , Janet M. Thornton , Christine A. Orengo The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:247-251 [Journal ] Ganesan Pugalenthi , Anirban Bhaduri , Ramanathan Sowdhamini GenDiS: Genomic Distribution of protein structural domain Superfamilies. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:252-255 [Journal ] Véronique Giudicelli , Denys Chaume , Marie-Paule Lefranc IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:256-261 [Journal ] Samir S. Velankar , P. McNeil , V. Mittard-Runte , A. Suarez , Daniel Barrell , Rolf Apweiler , Kim Henrick E-MSD: an integrated data resource for bioinformatics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:262-265 [Journal ] Roman A. Laskowski , Victor V. Chistyakov , Janet M. Thornton PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:266-268 [Journal ] Goran Neshich , Adauto L. Mancini , Michel E. B. Yamagishi , Paula R. Kuser , Renato Fileto , Ivan P. Pinto , Juliana F. Palandrani , João N. Krauchenco , Christian Baudet , Arnaldo J. Montagner , Roberto H. Higa STING Report: convenient web-based application for graphic and tabular presentations of protein sequence, structure and function descriptors from the STING database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:269-274 [Journal ] Gábor E. Tusnády , Zsuzsanna Dosztányi , István Simon PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:275-278 [Journal ] Kate F. Fulton , Glyn L. Devlin , Rachel A. Jodun , Linda Silvestri , Stephen P. Bottomley , Alan R. Fersht , Ashley M. Buckle PFD: a database for the investigation of protein folding kinetics and stability. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:279-283 [Journal ] Huaiyu Mi , Betty Lazareva-Ulitsky , Rozina Loo , Anish Kejariwal , Jody A. Vandergriff , Steven Rabkin , Nan Guo , Anushya Muruganujan , Olivier Doremieux , Michael J. Campbell , Hiroaki Kitano , Paul D. Thomas The PANTHER database of protein families, subfamilies, functions and pathways. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:284-288 [Journal ] Jonathan D. Wren , Jeffrey T. Chang , James Pustejovsky , Eytan Adar , Harold R. Garner , Russ B. Altman Biomedical term mapping databases. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:289-293 [Journal ] James R. Cole , B. Chai , Ryan J. Farris , Q. Wang , S. A. Kulam , D. M. McGarrell , George M. Garrity , James M. Tiedje The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:294-296 [Journal ] Paul Kersey , Lawrence Bower , Lorna Morris , Alan Horne , Robert Petryszak , Carola Kanz , Alexander Kanapin , Ujjwal Das , Karine Michoud , Isabelle Phan , Alexandre Gattiker , Tamara Kulikova , Nadeem Faruque , Karyn Duggan , Peter Mclaren , Britt Reimholz , Laurent Duret , Simon Penel , Ingmar Reuter , Rolf Apweiler Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:297-302 [Journal ] José M. Peregrin-Alvarez , Andrew Yam , Gaya Sivakumar , John Parkinson PartiGeneDB - collating partial genomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:303-307 [Journal ] M. Louise Riley , Thorsten Schmidt , Christian Wagner , Hans-Werner Mewes , Dmitrij Frishman The PEDANT genome database in 2005. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:308-310 [Journal ] Elliot J. Lefkowitz , Chris Upton , Shankar S. Changayil , Charles Buck , Paula Traktman , R. Mark L. Buller Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:311-316 [Journal ] Paul Stothard , Gary H. Van Domselaar , Savita Shrivastava , Anchi Guo , Brian O'Neill , Joseph A. Cruz , Michael Ellison , David S. Wishart BacMap: an interactive picture atlas of annotated bacterial genomes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:317-320 [Journal ] Hiroyuki Ogata , Jean-Michel Claverie Metagrowth: a new resource for the building of metabolic hypotheses in microbiology. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:321-324 [Journal ] Lihong Chen , Jian Yang , Jun Yu , Zhijian Yao , Lilian Sun , Yan Shen , Qi Jin VFDB: a reference database for bacterial virulence factors. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:325-328 [Journal ] Raju V. Misra , Richard S. P. Horler , Wolfgang Reindl , Igor Goryanin , Gavin H. Thomas Echo BASE: an integrated post-genomic database for Escherichia coli . [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:329-333 [Journal ] Ingrid M. Keseler , Julio Collado-Vides , Socorro Gama-Castro , John Ingraham , Suzanne M. Paley , Ian T. Paulsen , Martín Peralta-Gil , Peter D. Karp EcoCyc: a comprehensive database resource for Escherichia coli . [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:334-337 [Journal ] Geoffrey L. Winsor , Raymond Lo , Shannan J. Ho Sui , Korine S. E. Ung , Shao-Shan Huang , Dean Cheng , Wai-Kay Ho Ching , Robert E. W. Hancock , Fiona S. L. Brinkman Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:338-343 [Journal ] Uma Maheswari , Anton Montsant , Johannes Goll , S. Krishnasamy , K. R. Rajyashri , Villoo Morawala Patell , Chris Bowler The Diatom EST Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:344-347 [Journal ] Leandro Hermida , Sophie Brachat , Sylvia Voegeli , Peter Philippsen , Michael Primig The Ashbya Genome Database (AGD) - a tool for the yeast community and genome biologists. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:348-352 [Journal ] C. d'Enfert , S. Goyard , S. Rodriguez-Arnaveilhe , L. Frangeul , L. Jones , Fredj Tekaia , O. Bader , Antje Albrecht , L. Castillo , A. Dominguez , J. F. Ernst , C. Fradin , C. Gaillardin , S. Garcia-Sanchez , P. de Groot , B. Hube , F. M. Klis , S. Krishnamurthy , D. Kunze , M.-C. Lopez , A. Mavor , N. Martin , I. Moszer , D. Onésime , J. Perez Martin , R. Sentandreu , E. Valentin , A. J. P. Brown CandidaDB: a genome database for Candida albicans pathogenomics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:353-357 [Journal ] Martha B. Arnaud , Maria C. Costanzo , Marek S. Skrzypek , Gail Binkley , Christopher Lane , Stuart R. Miyasato , Gavin Sherlock The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:358-363 [Journal ] Ulrich Güldener , Martin Münsterkötter , Gabi Kastenmüller , Norman Strack , Jacques van Helden , Christian Lemer , J. Richelles , Shoshana J. Wodak , J. García-Martínez , J. E. Pérez-Ortín , Holger Michael , Andreas Kaps , E. Talla , Bernard Dujon , B. André , J. L. Souciet , J. De Montigny , E. Bon , C. Gaillardin , Hans-Werner Mewes CYGD: the Comprehensive Yeast Genome Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:364-368 [Journal ] Luciano Fernandez-Ricaud , Jonas Warringer , Elke Ericson , Ilona Pylvänäinen , Graham J. L. Kemp , Olle Nerman , Anders Blomberg PROPHECY - a database for high-resolution phenomics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:369-373 [Journal ] Rama Balakrishnan , Karen R. Christie , Maria C. Costanzo , Kara Dolinski , Selina S. Dwight , Stacia R. Engel , Dianna G. Fisk , Jodi E. Hirschman , Eurie L. Hong , Robert S. Nash , Rose Oughtred , Marek S. Skrzypek , Chandra L. Theesfeld , Gail Binkley , Qing Dong , Christopher Lane , Anand Sethuraman , Shuai Weng , David Botstein , J. Michael Cherry Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD). [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:374-377 [Journal ] Michael Riffle , Lars Malmström , Trisha N. Davis The Yeast Resource Center Public Data Repository. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:378-382 [Journal ] Nansheng Chen , Todd W. Harris , Igor Antoshechkin , Carol Bastiani , Tamberlyn Bieri , Darin Blasiar , Keith Bradnam , Payan Canaran , Juancarlos Chan , Chao-Kung Chen , Wen J. Chen , Fiona Cunningham , Paul Davis , Eimear Kenny , Ranjana Kishore , Daniel Lawson , Raymond Lee , Hans-Michael Müller , Cecilia Nakamura , Shraddha Pai , Philip Ozersky , Andrei Petcherski , Anthony Rogers , Aniko Sabo , Erich M. Schwarz , Kimberly Van Auken , Qinghua Wang , Richard Durbin , John Spieth , Paul W. Sternberg , Lincoln D. Stein WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:383-389 [Journal ] Rachel A. Drysdale , Madeline A. Crosby FlyBase: genes and gene models. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:390-395 [Journal ] Andre R. O. Cavalcanti , Thomas H. Clarke , Laura F. Landweber MDS_IES_DB: a database of macronuclear and micronuclear genes in spirotrichous ciliates. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:396-398 [Journal ] Jing Wang , Qingyou Xia , Ximiao He , Mingtao Dai , Jue Ruan , Jie Chen , Guo Yu , Haifeng Yuan , Yafeng Hu , Ruiqiang Li , Tao Feng , Chen Ye , Cheng Lu , Jun Wang , Songgang Li , Gane Ka-Shu Wong , Huanming Yang , Jian Wang , Zhonghuai Xiang , Zeyang Zhou , Jun Yu SilkDB: a knowledgebase for silkworm biology and genomics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:399-402 [Journal ] M. D. Prasad , M. Muthulakshmi , K. P. Arunkumar , M. Madhu , Vattipally B. Sreenu , V. Pavithra , Buddhaditta Bose , Hampapathalu A. Nagarajaram , K. Mita , T. Shimada , Javaregowda Nagaraju SilkSatDb: a microsatellite database of the silkworm, Bombyx mori . [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:403-406 [Journal ] Nozomi Nagano EzCatDB: the Enzyme Catalytic-mechanism Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:407-412 [Journal ] Amelie Stein , Robert B. Russell , Patrick Aloy 3did: interacting protein domains of known three-dimensional structure. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:413-417 [Journal ] C. Alfarano , C. E. Andrade , K. Anthony , N. Bahroos , M. Bajec , K. Bantoft , Doron Betel , B. Bobechko , K. Boutilier , E. Burgess , K. Buzadzija , R. Cavero , C. D'Abreo , Ian Donaldson , D. Dorairajoo , M. J. Dumontier , M. R. Dumontier , V. Earles , R. Farrall , H. Feldman , E. Garderman , Y. Gong , R. Gonzaga , V. Grytsan , E. Gryz , V. Gu , E. Haldorsen , A. Halupa , R. Haw , A. Hrvojic , L. Hurrell , Ruth Isserlin , F. Jack , F. Juma , A. Khan , T. Kon , S. Konopinsky , V. Le , E. Lee , S. Ling , M. Magidin , J. Moniakis , J. Montojo , S. Moore , B. Muskat , I. Ng , J. P. Paraiso , B. Parker , Greg Pintilie , R. Pirone , John J. Salama , S. Sgro , T. Shan , Y. Shu , J. Siew , D. Skinner , Kevin A. Snyder , R. Stasiuk , D. Strumpf , Brigitte Tuekam , S. Tao , Z. Wang , M. White , R. Willis , Cheryl Wolting , S. Wong , A. Wrong , C. Xin , R. Yao , B. Yates , S. Zhang , K. Zheng , Tony Pawson , B. F. Francis Ouellette , Christopher W. V. Hogue The Biomolecular Interaction Network Database and related tools 2005 update. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:418-424 [Journal ] Elena A. Ananko , Nikolay L. Podkolodny , Irina L. Stepanenko , Olga A. Podkolodnaya , D. A. Rasskazov , D. S. Miginsky , Vitali A. Likhoshvai , Alexander V. Ratushny , N. N. Podkolodnaya , Nikolay A. Kolchanov GeneNet in 2005. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:425-427 [Journal ] G. Joshi-Tope , Marc Gillespie , Imre Vastrik , Peter D'Eustachio , Esther Schmidt , Bernard de Bono , Bijay Jassal , G. R. Gopinath , G. R. Wu , Lisa Matthews , Suzanna Lewis , Ewan Birney , Lincoln Stein Reactome: a knowledgebase of biological pathways. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:428-432 [Journal ] Christian von Mering , Lars Juhl Jensen , Berend Snel , Sean D. Hooper , Markus Krupp , Mathilde Foglierini , Nelly Jouffre , Martijn A. Huynen , Peer Bork STRING: known and predicted protein-protein associations, integrated and transferred across organisms. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:433-437 [Journal ] Jing Wang , Ximiao He , Jue Ruan , Mingtao Dai , Jie Chen , Yong Zhang , Yafeng Hu , Chen Ye , Shengting Li , Lijuan Cong , Lin Fang , Bin Liu , Songgang Li , Jian Wang , David W. Burt , Gane Ka-Shu Wong , Jun Yu , Huanming Yang , Jun Wang ChickVD: a sequence variation database for the chicken genome. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:438-441 [Journal ] Vamsi Veeramachaneni , Wojciech Makalowski DED: Database of Evolutionary Distances. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:442-446 [Journal ] Tim J. P. Hubbard , D. Andrews , Mario Cáccamo , Graham Cameron , Yuan Chen , Michele E. Clamp , Laura Clarke , G. Coates , Tony Cox , Fiona Cunningham , Val Curwen , Tim Cutts , Thomas Down , Richard Durbin , X. M. Fernandez-Suarez , James Gilbert , Martin Hammond , J. Herrero , H. Hotz , K. Howe , V. Iyer , K. Jekosch , Andreas Kähäri , Arek Kasprzyk , Damian Keefe , S. Keenan , Felix Kokocinski , D. London , I. Longden , Graham P. McVicker , Craig Melsopp , Patrick Meidl , Simon C. Potter , Glenn Proctor , Mark Rae , D. Rios , M. Schuster , Stephen M. J. Searle , J. Severin , Guy Slater , Damian Smedley , James Smith , William Spooner , Arne Stabenau , Jim Stalker , R. Storey , S. Trevanion , Abel Ureta-Vidal , J. Vogel , S. White , Cara Woodwark , Ewan Birney Ensembl 2005. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:447-453 [Journal ] Fan Hsu , Tom H. Pringle , Robert M. Kuhn , Donna Karolchik , Mark Diekhans , David Haussler , W. James Kent The UCSC Proteome Browser. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:454-458 [Journal ] J. L. Ashurst , C.-K. Chen , J. G. R. Gilbert , K. Jekosch , S. Keenan , Patrick Meidl , Stephen M. J. Searle , Jim Stalker , R. Storey , S. Trevanion , L. Wilming , Tim J. P. Hubbard The Vertebrate Genome Annotation (Vega) database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:459-465 [Journal ] Laura Elnitski , Belinda Giardine , Prachi Shah , Yi Zhang , Cathy Riemer , Matthew Weirauch , Richard Burhans , Webb Miller , Ross C. Hardison Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:466-470 [Journal ] Janan T. Eppig , Carol J. Bult , James A. Kadin , Joel E. Richardson , Judith A. Blake The Mouse Genome Database (MGD): from genes to mice - a community resource for mouse biology. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:471-475 [Journal ] Kevin P. O'Brien , Maido Remm , Erik L. L. Sonnhammer Inparanoid: a comprehensive database of eukaryotic orthologs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:476-480 [Journal ] Eric Bazin , Laurent Duret , Simon Penel , Nicolas Galtier Polymorphix: a sequence polymorphism database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:481-484 [Journal ] Norberto de la Cruz , Susan Bromberg , Dean Pasko , Mary Shimoyama , Simon N. Twigger , Jiali Chen , Chin-Fu Chen , Chunyu Fan , Cindy Foote , Gopal R. Gopinath , Glenn Harris , Aubrey Hughes , Yuan Ji , Weihong Jin , Dawei Li , Jedidiah Mathis , Natalya Nenasheva , Jeff Nie , Rajni Nigam , Victoria Petri , Dorothy Reilly , Weiye Wang , Wenhua Wu , Angela Zuniga-Meyer , Lan Zhao , Anne E. Kwitek , Peter J. Tonellato , Howard J. Jacob The Rat Genome Database (RGD): developments towards a phenome database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:485-491 [Journal ] Greta Petersen , Per Johnson , Lars Andersson , Karin Klinga-Levan , Pedro M. Gómez-Fabre , Fredrik Ståhl RatMap - rat genome tools and data. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:492-494 [Journal ] Christian Roth , Matthew J. Betts , Pär Steffansson , Gisle Sælensminde , David A. Liberles The Adaptive Evolution Database (TAED): a phylogeny based tool for comparative genomics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:495-497 [Journal ] Tobias Penzkofer , Thomas Dandekar , Tomasz Zemojtel L1Base: from functional annotation to prediction of active LINE-1 elements. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:498-500 [Journal ] Kim D. Pruitt , Tatiana A. Tatusova , Donna R. Maglott NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:501-504 [Journal ] Angelo Boccia , Mauro Petrillo , Diego di Bernardo , Alessandro Guffanti , Flavio Mignone , Stefano Confalonieri , Lucilla Luzi , Graziano Pesole , Giovanni Paolella , Andrea Ballabio , Sandro Banfi DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:505-510 [Journal ] Robert Hoffmann , Joaquín Dopazo , Juan C. Cigudosa , Alfonso Valencia HCAD, closing the gap between breakpoints and genes. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:511-513 [Journal ] Ada Hamosh , Alan F. Scott , Joanna S. Amberger , Carol A. Bocchini , Victor A. McKusick Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:514-517 [Journal ] Hyo Jin Kang , Kyoung Oak Choi , Byung-Dong Kim , Sangsoo Kim , Young Joo Kim FESD: a Functional Element SNPs Database in human. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:518-522 [Journal ] James Robinson , Matthew J. Waller , Peter Stoehr , Steven G. E. Marsh IPD - the Immuno Polymorphism Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:523-526 [Journal ] Joke Reumers , Joost Schymkowitz , Jesper Ferkinghoff-Borg , Francois Stricher , Luis Serrano , Frederic Rousseau SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:527-532 [Journal ] Kikuya Kato , Riu Yamashita , Ryo Matoba , Morito Monden , Shinzaburo Noguchi , Toshihisa Takagi , Kenta Nakai Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:533-536 [Journal ] João Pedro de Magalhães , Joana Costa , Olivier Toussaint HAGR: the Human Ageing Genomic Resources. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:537-543 [Journal ] Luc J. Smink , Erin M. Helton , Barry C. Healy , Christopher C. Cavnor , Alex C. Lam , Daisy Flamez , Oliver S. Burren , Yang Wang , Geoffrey E. Dolman , David B. Burdick , Vincent H. Everett , Gustavo Glusman , Davide Laneri , Lee Rowen , Helen Schuilenburg , Neil M. Walker , Josyf Mychaleckyj , Linda S. Wicker , Decio L. Eizirik , John A. Todd , Nathan Goodman T1DBase, a community web-based resource for type 1 diabetes research. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:544-549 [Journal ] Yasuhiro Kasai , Shin-ichi Hashimoto , Tomoyuki Yamada , Jun Sese , Sumio Sugano , Kouji Matsushima , Shinichi Morishita 5'SAGE: 5'-end Serial Analysis of Gene Expression database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:550-552 [Journal ] Helen E. Parkinson , Ugis Sarkans , Mohammadreza Shojatalab , Niran Abeygunawardena , Sergio Contrino , R. Coulson , Anna Farne , Gonzalo Garcia Lara , Ele Holloway , Misha Kapushesky , P. Lilja , Gaurab Mukherjee , Ahmet Oezcimen , Tim Rayner , Philippe Rocca-Serra , Anjan Sharma , Susanna-Assunta Sansone , Alvis Brazma ArrayExpress - a public repository for microarray gene expression data at the EBI. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:553-555 [Journal ] Maxim Shklar , Liora Strichman-Almashanu , Orit Shmueli , Michael Shmoish , Marilyn Safran , Doron Lancet GeneTide - Terra Incognita Discovery Endeavor: a new transcriptome focused member of the GeneCards/GeneNote suite of databases. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:556-561 [Journal ] Tanya Barrett , Tugba O. Suzek , Dennis B. Troup , Stephen E. Wilhite , Wing-Chi Ngau , Pierre Ledoux , Dmitry Rudnev , Alex E. Lash , Wataru Fujibuchi , Ron Edgar NCBI GEO: mining millions of expression profiles - database and tools. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:562-566 [Journal ] Motohiko Tanino , Marie-Anne Debily , Takuro Tamura , Teruyoshi Hishiki , Osamu Ogasawara , Katsuji Murakawa , Shoko Kawamoto , Kouichi Itoh , Shinya Watanabe , Sandro José De Souza , Sandrine Imbeaud , Esther Graudens , Eric Eveno , Phillip Hilton , Yukio Sudo , Janet Kelso , Kazuho Ikeo , Tadashi Imanishi , Takashi Gojobori , Charles Auffray , Winston Hide , Kousaku Okubo The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:567-572 [Journal ] Vishal Shah , Sriram Sridhar , Jennifer Beane , Jerome S. Brody , Avrum Spira SIEGE: Smoking Induced Epithelial Gene Expression Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:573-579 [Journal ] Catherine A. Ball , Ihab A. B. Awad , Janos Demeter , Jeremy Gollub , Joan M. Hebert , Tina Hernandez-Boussard , Heng Jin , John C. Matese , Michael Nitzberg , Farrell Wymore , Zachariah K. Zachariah , Patrick O. Brown , Gavin Sherlock The Stanford Microarray Database accommodates additional microarray platforms and data formats. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:580-582 [Journal ] Oliver Drews , Angelika Görg DynaProt 2D: an advanced proteomic database for dynamic online access to proteomes and two-dimensional electrophoresis gels. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:583-587 [Journal ] Florencio Pazos , David Guijas , Alfonso Valencia , Victor de Lorenzo MetaRouter: bioinformatics for bioremediation. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:588-592 [Journal ] Marie-Paule Lefranc , Véronique Giudicelli , Quentin Kaas , Elodie Duprat , Joumana Jabado-Michaloud , Dominique Scaviner , Chantal Ginestoux , Oliver Clément , Denys Chaume , Gérard Lefranc IMGT, the international ImMunoGeneTics information system® . [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:593-597 [Journal ] Nuwee Wiwatwattana , Anuj Kumar Organelle DB: a cross-species database of protein localization and function. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:598-604 [Journal ] Joshua L. Heazlewood , A. Harvey Millar AMPDB: the Arabidopsis Mitochondrial Protein Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:605-610 [Journal ] Marty C. Brandon , Marie T. Lott , Kevin Cuong Nguyen , Syawal Spolim , Shamkant B. Navathe , Pierre Baldi , Douglas C. Wallace MITOMAP: a human mitochondrial genome database - 2004 update. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:611-613 [Journal ] Lishuang Shen , Jian Gong , Rico A. Caldo , Dan Nettleton , Dianne Cook , Roger P. Wise , Julie A. Dickerson BarleyBase - an expression profiling database for plant genomics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:614-618 [Journal ] C. Künne , M. Lange , T. Funke , H. Miehe , T. Thiel , I. Grosse , U. Scholz CR-EST: a resource for crop ESTs. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:619-621 [Journal ] Stephen Rudd openSputnik - a database to ESTablish comparative plant genomics using unsaturated sequence collections. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:622-627 [Journal ] Stephen Rudd , Heiko Schoof , Klaus F. X. Mayer PlantMarkers - a database of predicted molecular markers from plants. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:628-632 [Journal ] John W. S. Brown , Peter J. Shaw , Paul Shaw , David F. Marshall Arabidopsis nucleolar protein database (AtNoPDB). [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:633-636 [Journal ] Adam M. Gustafson , Edwards Allen , Scott Givan , Daniel Smith , James C. Carrington , Kristin D. Kasschau ASRP: the Arabidopsis Small RNA Project Database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:637-640 [Journal ] Sébastien Aubourg , Véronique Brunaud , Clémence Bruyère , Mark Cock , Richard Cooke , Annick Cottet , Arnaud Couloux , Patrice Déhais , Gilbert Deléage , Aymeric Duclert , Manuel Echeverria , Aimée Eschbach , Denis Falconet , Ghislain Filippi , Christine Gaspin , Christophe Geourjon , Jean-Michel Grienenberger , Guy Houlné , Elisabeth Jamet , Frédéric Lechauve , Olivier Leleu , Philippe Leroy , Régis Mache , Christian Meyer , Hafed Nedjari , Ioan Negrutiu , Valérie Orsini , Eric Peyretaillade , Cyril Pommier , Jeroen Raes , Jean-Loup Risler , Stéphane Rivière , Stephane Rombauts , Pierre Rouzé , Michel Schneider , Philippe Schwob , Ian Small , Ghislain Soumayet-Kampetenga , Darko Stankovski , Claire Toffano , Michael Tognolli , Michel Caboche , Alain Lecharny GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:641-646 [Journal ] Tetsuya Sakurai , Masakazu Satou , Kenji Akiyama , Kei Iida , Motoaki Seki , Takashi Kuromori , Takuya Ito , Akihiko Konagaya , Tetsuro Toyoda , Kazuo Shinozaki RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:647-650 [Journal ] Yuichi Ito , Kohji Arikawa , Baltazar A. Antonio , Isamu Ohta , Shinji Naito , Yoshiyuki Mukai , Atsuko Shimano , Masatoshi Masukawa , Michie Shibata , Mayu Yamamoto , Yukiyo Ito , Junri Yokoyama , Yasumichi Sakai , Katsumi Sakata , Yoshiaki Nagamura , Nobukazu Namiki , Takashi Matsumoto , Kenichi Higo , Takuji Sasaki Rice Annotation Database (RAD): a contig-oriented database for map-based rice genomics. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:651-655 [Journal ] Christopher G. Love , Andrew J. Robinson , Geraldine A. C. Lim , Clare J. Hopkins , Jacqueline Batley , Gary Barker , German C. Spangenberg , David Edwards Brassica ASTRA: an integrated database for Brassica genomic research. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:656-659 [Journal ] Michael D. Gonzales , Eric Archuleta , Andrew D. Farmer , Kamal Gajendran , David Grant , Randy C. Shoemaker , William D. Beavis , Mark E. Waugh The Legume Information System (LIS): an integrated information resource for comparative legume biology. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:660-665 [Journal ] Svenja Meyer , Axel Nagel , Christiane Gebhardt PoMaMo - a comprehensive database for potato genome data. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:666-670 [Journal ] Ida Retter , Hans Helmar Althaus , Richard Münch , Werner Müller VBASE2, an integrative V gene database. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:671-674 [Journal ] Susie Stephens , Jake Yue Chen , Marcel G. Davidson , Shiby Thomas , Barry M. Trute Oracle Database 10g : a platform for BLAST search and Regular Expression pattern matching in life sciences. [Citation Graph (0, 0)][DBLP ] Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:675-679 [Journal ]