Journals in DBLP
Micah Hamady , Erin Peden , Rob Knight , Ravinder Singh Fast-Find: A novel computational approach to analyzing combinatorial motifs. [Citation Graph (0, 0)][DBLP ] Journal ] Pall F. Jonsson , Tamara Cavanna , Daniel Zicha , Paul A. Bates Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis. [Citation Graph (0, 0)][DBLP ] Journal ] Ramón Díaz-Uriarte , Sara Alvarez de Andrés Gene selection and classification of microarray data using random forest. [Citation Graph (0, 0)][DBLP ] Journal ] Lakshmi K. Matukumalli , John J. Grefenstette , David L. Hyten , Ik-Young Choi , Perry B. Cregan , Curtis P. Van Tassell Application of machine learning in SNP discovery. [Citation Graph (0, 0)][DBLP ] Journal ] Heladia Salgado , Alberto Santos-Zavaleta , Socorro Gama-Castro , Martín Peralta-Gil , Mónica I. Peñaloza-Spínola , Agustino Martínez-Antonio , Peter D. Karp , Julio Collado-Vides The comprehensive updated regulatory network of Escherichia coli K-12. [Citation Graph (0, 0)][DBLP ] Journal ] Giacomo Gamberoni , Sergio Storari , Stefano Volinia Finding biological process modifications in cancer tissues by mining gene expression correlations. [Citation Graph (0, 0)][DBLP ] Journal ] Jie Zheng , Jan T. Svensson , Kavitha Madishetty , Timothy J. Close , Tao Jiang , Stefano Lonardi OligoSpawn: a software tool for the design of overgo probes from large unigene datasets. [Citation Graph (0, 0)][DBLP ] Journal ] Staal A. Vinterbo , Stephan Dreiseitl , Lucila Ohno-Machado Approximation properties of haplotype tagging. [Citation Graph (0, 0)][DBLP ] Journal ] Feng-Biao Guo , Chun-Ting Zhang ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes. [Citation Graph (0, 0)][DBLP ] Journal ] James A. Casbon , Gavin E. Crooks , Mansoor A. S. Saqi A high level interface to SCOP and ASTRAL implemented in Python. [Citation Graph (0, 0)][DBLP ] Journal ] Andrean Goede , Elke Michalsky , Ulrike Schmidt , Robert Preissner SuperMimic - Fitting peptide mimetics into protein structures. [Citation Graph (0, 0)][DBLP ] Journal ] Zihua Hu , Gail R. Willsky Utilization of two sample t -test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip studies. [Citation Graph (0, 0)][DBLP ] Journal ] Feng Li , Maoyu Li , Zhiqiang Xiao , Pengfei Zhang , Jianling Li , Zhuchu Chen Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML Database - Xindice. [Citation Graph (0, 0)][DBLP ] Journal ] Oliver Sander , Ingolf Sommer , Thomas Lengauer Local protein structure prediction using discriminative models. [Citation Graph (0, 0)][DBLP ] Journal ] James J. Yang , Mark C. K. Yang An improved procedure for gene selection from microarray experiments using false discovery rate criterion. [Citation Graph (0, 0)][DBLP ] Journal ] Markus Brameier , Josien Haan , Andrea Krings , Robert M. MacCallum Automatic discovery of cross-family sequence features associated with protein function. [Citation Graph (0, 0)][DBLP ] Journal ] Brian Tjaden An approach for clustering gene expression data with error information. [Citation Graph (0, 0)][DBLP ] Journal ] Yuan-Yuan Li , Lei Qin , Zong-Ming Guo , Lei Liu , Hao Xu , Pei Hao , Jiong Su , Yixiang Shi , Wei-Zhong He , Yi-Xue Li In silico discovery of human natural antisense transcripts.Citation Graph (0, 0)][DBLP ] Journal ] Morgan N. Price , Adam P. Arkin , Eric J. Alm OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments. [Citation Graph (0, 0)][DBLP ] Journal ] Youfang Cao , Shi Liu , Lida Zhang , Jie Qin , Jiang Wang , Kexuan Tang Prediction of protein structural class with Rough Sets. [Citation Graph (0, 0)][DBLP ] Journal ] Patrick Durand , Laurent Labarre , Alain Meil , Jean-Louis Divol , Yves Vandenbrouck , Alain Viari , Jérôme Wojcik GenoLink: a graph-based querying and browsing system for investigating the function of genes and proteins. [Citation Graph (0, 0)][DBLP ] Journal ] Alexei A. Adzhubei , Jon K. Laerdahl , Anna V. Vlasova preAssemble: a tool for automatic sequencer trace data processing. [Citation Graph (0, 0)][DBLP ] Journal ] Li-Xuan Qin , Richard P. Beyer , Francesca N. Hudson , Nancy J. Linford , Daryl E. Morris , Kathleen F. Kerr Evaluation of methods for oligonucleotide array data via quantitative real-time PCR. [Citation Graph (0, 0)][DBLP ] Journal ] Kyaw Tun , Pawan K. Dhar , Maria Concetta Palumbo , Alessandro Giuliani Metabolic pathways variability and sequence/networks comparisons. [Citation Graph (0, 0)][DBLP ] Journal ] Jason C. Ting , Ying Ye , George H. Thomas , Ingo Ruczinski , Jonathan Pevsner Analysis and visualization of chromosomal abnormalities in SNP data with SNPscan. [Citation Graph (0, 0)][DBLP ] Journal ] Xia Li , Shaoqi Rao , Wei Jiang , Chuanxing Li , Yun Xiao , Zheng Guo , Qingpu Zhang , Lihong Wang , Lei Du , Jing Li , Li Li , Tianwen Zhang , Qing K. Wang Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling. [Citation Graph (0, 0)][DBLP ] Journal ] Hongbo Zhu , Francisco S. Domingues , Ingolf Sommer , Thomas Lengauer NOXclass: prediction of protein-protein interaction types. [Citation Graph (0, 0)][DBLP ] Journal ] Nicolas Thierry-Mieg A new pooling strategy for high-throughput screening: the Shifted Transversal Design. [Citation Graph (0, 0)][DBLP ] Journal ] Thomas Mailund , Gerth Stølting Brodal , Rolf Fagerberg , Christian N. S. Pedersen , Derek Phillips Recrafting the neighbor-joining method. [Citation Graph (0, 0)][DBLP ] Journal ] Ming Yi , Jay D. Horton , Jonathan C. Cohen , Helen H. Hobbs , Robert M. Stephens WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data. [Citation Graph (0, 0)][DBLP ] Journal ] Bradford C. Powell , Clyde A. Hutchison III Similarity-based gene detection: using COGs to find evolutionarily-conserved ORFs. [Citation Graph (0, 0)][DBLP ] Journal ] Xian Wang , Ao Li , Zhaohui Jiang , Huanqing Feng Missing value estimation for DNA microarray gene expression data by Support Vector Regression imputation and orthogonal coding scheme. [Citation Graph (0, 0)][DBLP ] Journal ] Erdahl T. Teber , Edward Crawford , Kent B. Bolton , Derek Van Dyk , Peter R. Schofield , Vimal Kapoor , W. Bret Church Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration. [Citation Graph (0, 0)][DBLP ] Journal ] Holger Conzelmann , Julio Saez-Rodriguez , Thomas Sauter , Boris N. Kholodenko , Ernst Dieter Gilles A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks. [Citation Graph (0, 0)][DBLP ] Journal ] Kyoungmi Kim , Grier P. Page , T. Mark Beasley , Stephen Barnes , Katherine E. Scheirer , David B. Allison A proposed metric for assessing the measurement quality of individual microarrays. [Citation Graph (0, 0)][DBLP ] Journal ] Domenico Catalano , Flavio Licciulli , Antonio Turi , Giorgio Grillo , Cecilia Saccone , Domenica D'Elia MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa. [Citation Graph (0, 0)][DBLP ] Journal ] Xiao I. Liu , Neeraj Korde , Ursula Jakob , Lars I. Leichert CoSMoS: Conserved Sequence Motif Search in the proteome. [Citation Graph (0, 0)][DBLP ] Journal ] Hao-Teng Chang , Tun-Wen Pai , Tan-Chi Fan , Bo-Han Su , Pei-Chih Wu , Chuan Yi Tang , Chun-Tien Chang , Shi-Hwei Liu , Margaret Dah-Tsyr Chang A reinforced merging methodology for mapping unique peptide motifs in members of protein families. [Citation Graph (0, 0)][DBLP ] Journal ] Alison A. Motsinger , Stephen L. Lee , George Mellick , Marylyn D. Ritchie GPNN: Power studies and applications of a neural network method for detecting gene-gene interactions in studies of human disease. [Citation Graph (0, 0)][DBLP ] Journal ] Xiaobo Zhou , James Chou , Stephen T. C. Wong Protein structure similarity from principle component correlation analysis. [Citation Graph (0, 0)][DBLP ] Journal ] Monica Chagoyen , Pedro Carmona-Saez , Hagit Shatkay , José María Carazo , Alberto D. Pascual-Montano Discovering semantic features in the literature: a foundation for building functional associations. [Citation Graph (0, 0)][DBLP ] Journal ] Harald Barsnes , Svein-Ole Mikalsen , Ingvar Eidhammer MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences. [Citation Graph (0, 0)][DBLP ] Journal ] Tim Van den Bulcke , Koen Van Leemput , Bart Naudts , Piet van Remortel , Hongwu Ma , Alain Verschoren , Bart De Moor , Kathleen Marchal SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms. [Citation Graph (0, 0)][DBLP ] Journal ] Ryung S. Kim , Hongkai Ji , Wing Hung Wong An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse. [Citation Graph (0, 0)][DBLP ] Journal ] Olivier Croce , Michaël Lamarre , Richard Christen Querying the public databases for sequences using complex keywords contained in the feature lines. [Citation Graph (0, 0)][DBLP ] Journal ] Wen-Yu Chung , Réka Albert , István Albert , Anton Nekrutenko , Kateryna D. Makova Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network. [Citation Graph (0, 0)][DBLP ] Journal ] Ross I. Brinkworth , Alan L. Munn , Bostjan Kobe Protein kinases associated with the yeast phosphoproteome. [Citation Graph (0, 0)][DBLP ] Journal ] James A. Casbon , Mansoor A. S. Saqi On single and multiple models of protein families for the detection of remote sequence relationships. [Citation Graph (0, 0)][DBLP ] Journal ] Jeanette N. McClintick , Howard J. Edenberg Effects of filtering by Present call on analysis of microarray experiments. [Citation Graph (0, 0)][DBLP ] Journal ] Xing Qiu , Yuanhui Xiao , Alexander Gordon , Andrei Yakovlev Assessing stability of gene selection in microarray data analysis. [Citation Graph (0, 0)][DBLP ] Journal ] Kristofer Hallén , Johan Björkegren , Jesper Tegnér Detection of compound mode of action by computational integration of whole-genome measurements and genetic perturbations. [Citation Graph (0, 0)][DBLP ] Journal ] Bor-Sen Chen , Yu-Chao Wang On the attenuation and amplification of molecular noise in genetic regulatory networks. [Citation Graph (0, 0)][DBLP ] Journal ] Marcin von Grotthuss , Dariusz Plewczynski , Krzysztof Ginalski , Leszek Rychlewski , Eugene I. Shakhnovich PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics. [Citation Graph (0, 0)][DBLP ] Journal ] Pedro Carmona-Saez , Monica Chagoyen , Andrés Rodríguez , Oswaldo Trelles , José María Carazo , Alberto D. Pascual-Montano Integrated analysis of gene expression by association rules discovery. [Citation Graph (0, 0)][DBLP ] Journal ] Michael Baitaluk , Xufei Qian , Shubhada Godbole , Alpan Raval , Animesh Ray , Amarnath Gupta PathSys: integrating molecular interaction graphs for systems biology. [Citation Graph (0, 0)][DBLP ] Journal ] Steffen Klamt , Julio Saez-Rodriguez , Jonathan A. Lindquist , Luca Simeoni , Ernst Dieter Gilles A methodology for the structural and functional analysis of signaling and regulatory networks. [Citation Graph (0, 0)][DBLP ] Journal ] Yanan Yu , Mya Breitbart , Pat McNairnie , Forest Rohwer FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries. [Citation Graph (0, 0)][DBLP ] Journal ] Bin Zheng , David C. McLean Jr , Xinghua Lu Identifying biological concepts from a protein-related corpus with a probabilistic topic model. [Citation Graph (0, 0)][DBLP ] Journal ] Hemant Ishwaran , J. Sunil Rao , Udaya B. Kogalur BAMarrayTM : Java software for Bayesian analysis of variance for microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Kim W. Carter , Pamela A. McCaskie , Lyle J. Palmer JLIN: A java based linkage disequilibrium plotter. [Citation Graph (0, 0)][DBLP ] Journal ] Phillip McClurg , Mathew T. Pletcher , Tim Wiltshire , Andrew I. Su Comparative analysis of haplotype association mapping algorithms. [Citation Graph (0, 0)][DBLP ] Journal ] Mario Stanke , Oliver Schöffmann , Burkhard Morgenstern , Stephan Waack Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. [Citation Graph (0, 0)][DBLP ] Journal ] Claes R. Andersson , Anders Isaksson , Mats G. Gustafsson Bayesian detection of periodic mRNA time profiles without use of training examples. [Citation Graph (0, 0)][DBLP ] Journal ] Christoph Gille , Peter N. Robinson HotSwap for bioinformatics: A STRAP tutorial. [Citation Graph (0, 0)][DBLP ] Journal ] Svetlana A. Shabalina , Alexey N. Spiridonov , Aleksey Y. Ogurtsov Computational models with thermodynamic and composition features improve siRNA design. [Citation Graph (0, 0)][DBLP ] Journal ] Hanno Teeling , Frank Oliver Glöckner RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits. [Citation Graph (0, 0)][DBLP ] Journal ] Christian V. Forst , Christoph Flamm , Ivo L. Hofacker , Peter F. Stadler Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation. [Citation Graph (0, 0)][DBLP ] Journal ] Mikael Bodén , Zheng Yuan , Timothy L. Bailey Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures. [Citation Graph (0, 0)][DBLP ] Journal ] Feng He , An-Ping Zeng In search of functional association from time-series microarray data based on the change trend and level of gene expression. [Citation Graph (0, 0)][DBLP ] Journal ] Aaron Birkland , Golan Yona BIOZON: a system for unification, management and analysis of heterogeneous biological data. [Citation Graph (0, 0)][DBLP ] Journal ] Paul Shafer , Timothy Isganitis , Golan Yona Hubs of knowledge: using the functional link structure in Biozon to mine for biologically significant entities. [Citation Graph (0, 0)][DBLP ] Journal ] Zuozhou Chen , Weilin Wang , Xuefeng Bruce Ling , Jane Jijun Liu , Liangbiao Chen GO-Diff: Mining functional differentiation between EST-based transcriptomes. [Citation Graph (0, 0)][DBLP ] Journal ] Daniel P. Berrar , Ian Bradbury , Werner Dubitzky Instance-based concept learning from multiclass DNA microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Brandon W. Higgs , Jennifer W. Weller , Jeffrey L. Solka Spectral embedding finds meaningful (relevant) structure in image and microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Andrew E. Firth , Chris M. Brown Detecting overlapping coding sequences in virus genomes. [Citation Graph (0, 0)][DBLP ] Journal ] Chengpeng Bi , Peter K. Rogan BIPAD: A web server for modeling bipartite sequence elements. [Citation Graph (0, 0)][DBLP ] Journal ] Donglin Liu , Joel H. Graber Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation. [Citation Graph (0, 0)][DBLP ] Journal ] Pedro Carmona-Saez , Roberto D. Pascual-Marqui , Francisco Tirado , José María Carazo , Alberto D. Pascual-Montano Biclustering of gene expression data by non-smooth non-negative matrix factorization. [Citation Graph (0, 0)][DBLP ] Journal ] Gareth Palidwor , Emmanuel G. Reynaud , Miguel A. Andrade-Navarro Taxonomic colouring of phylogenetic trees of protein sequences. [Citation Graph (0, 0)][DBLP ] Journal ] Jie Wu , Zhenjun Hu , Charles DeLisi Gene annotation and network inference by phylogenetic profiling. [Citation Graph (0, 0)][DBLP ] Journal ] Alistair R. R. Forrest , Darrin F. Taylor , J. Lynn Fink , M. Milena Gongora , Cameron Flegg , Rohan D. Teasdale , Harukazu Suzuki , Mutsumi Kanamori , Chikatoshi Kai , Yoshihide Hayashizaki , Sean M. Grimmond PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases. [Citation Graph (0, 0)][DBLP ] Journal ] Jing Huang , Wen Wei , Joyce Chen , Jane Zhang , Guoying Liu , Xiaojun Di , Rui Mei , Shumpei Ishikawa , Hiroyuki Aburatani , Keith W. Jones , Michael H. Shapero CARAT: A novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays. [Citation Graph (0, 0)][DBLP ] Journal ] Grier P. Page , Jode W. Edwards , Gary L. Gadbury , Prashanth Yelisetti , Jelai Wang , Prinal Trivedi , David B. Allison The PowerAtlas : a power and sample size atlas for microarray experimental design and research. [Citation Graph (0, 0)][DBLP ] Journal ] Joshua S. Yuan , Ann Reed , Feng Chen , C. Neal Stewart Jr. Statistical analysis of real-time PCR data. [Citation Graph (0, 0)][DBLP ] Journal ] Ricardo Z. N. Vêncio , Tie Koide , Suely L. Gomes , Carlos A. de B. Pereira BayGO: Bayesian analysis of ontology term enrichment in microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Delong Liu , Shyamal D. Peddada , Leping Li , Clarice R. Weinberg Phase analysis of circadian-related genes in two tissues. [Citation Graph (0, 0)][DBLP ] Journal ] Jonathan P. Bollback SIMMAP: Stochastic character mapping of discrete traits on phylogenies. [Citation Graph (0, 0)][DBLP ] Journal ] Michael E. Bradley , Steven A. Benner Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding proteins. [Citation Graph (0, 0)][DBLP ] Journal ] Shann-Ching Chen , Robert F. Murphy A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images. [Citation Graph (0, 0)][DBLP ] Journal ] Sudhir Varma , Richard Simon Bias in error estimation when using cross-validation for model selection. [Citation Graph (0, 0)][DBLP ] Journal ] Richard Tzong-Han Tsai , Shih-Hung Wu , Wen-Chi Chou , Yu-Chun Lin , Ding He , Jieh Hsiang , Ting-Yi Sung , Wen-Lian Hsu Various criteria in the evaluation of biomedical named entity recognition. [Citation Graph (0, 0)][DBLP ] Journal ] Howard Salis , Vassilios Sotiropoulos , Yiannis N. Kaznessis Multiscale Hy3S: Hybrid stochastic simulation for supercomputers. [Citation Graph (0, 0)][DBLP ] Journal ] Stefan M. Stanley , Timothy L. Bailey , John S. Mattick GONOME: measuring correlations between GO terms and genomic positions. [Citation Graph (0, 0)][DBLP ] Journal ] E. Ke Tang , Ponnuthurai N. Suganthan , Xin Yao Gene selection algorithms for microarray data based on least squares support vector machine. [Citation Graph (0, 0)][DBLP ] Journal ] Anders Bengtsson , Henrik Bengtsson Microarray image analysis: background estimation using quantile and morphological filters. [Citation Graph (0, 0)][DBLP ] Journal ] Richard G. Côté , Philip Jones , Rolf Apweiler , Henning Hermjakob The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. [Citation Graph (0, 0)][DBLP ] Journal ] Patrick Martin , Kim E. Boulukos , Philippe Pognonec REtools: A laboratory program for restriction enzyme work: enzyme selection and reaction condition assistance. [Citation Graph (0, 0)][DBLP ] Journal ] Ghislain Bidaut , Karsten Suhre , Jean-Michel Claverie , Michael F. Ochs Determination of strongly overlapping signaling activity from microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Henrik Bengtsson , Ola Hössjer Methodological study of affine transformations of gene expression data with proposed robust non-parametric multi-dimensional normalization method. [Citation Graph (0, 0)][DBLP ] Journal ] Yian A. Chen , Cheng-Chung Chou , Xinghua Lu , Elizabeth H. Slate , Konan Peck , Wenying Xu , Eberhard O. Voit , Jonas S. Almeida A multivariate prediction model for microarray cross-hybridization. [Citation Graph (0, 0)][DBLP ] Journal ] Richard P. Auburn , Roslin R. Russell , Bettina Fischer , Lisa A. Meadows , Santiago Sevillano Matilla , Steven Russell SimArray: a user-friendly and user-configurable microarray design tool. [Citation Graph (0, 0)][DBLP ] Journal ] Arthur Chun-Chieh Shih , D. T. Lee , Laurent Lin , Chin-Lin Peng , Shiang-Heng Chen , Yu-Wei Wu , Chun-Yi Wong , Meng-Yuan Chou , Tze-Chang Shiao , Mu-Fen Hsieh SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools. [Citation Graph (0, 0)][DBLP ] Journal ] Joan Teyra , Andreas Doms , Michael Schroeder , M. Teresa Pisabarro SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces. [Citation Graph (0, 0)][DBLP ] Journal ] Robert Tibshirani A simple method for assessing sample sizes in microarray experiments. [Citation Graph (0, 0)][DBLP ] Journal ] Rasmus Goll , Trine Olsen , Guanglin Cui , Jon Florholmen Evaluation of absolute quantitation by nonlinear regression in probe-based real-time PCR. [Citation Graph (0, 0)][DBLP ] Journal ] Teresa W. Haynes , Debra J. Knisley , Edith Seier , Yue Zou A quantitative analysis of secondary RNA structure using domination based parameters on trees. [Citation Graph (0, 0)][DBLP ] Journal ] Björn H. Junker , Christian Klukas , Falk Schreiber VANTED: A system for advanced data analysis and visualization in the context of biological networks. [Citation Graph (0, 0)][DBLP ] Journal ] Michael Spitzer , Stefan Lorkowski , Paul Cullen , Alexander Sczyrba , Georg Fuellen IsoSVM - Distinguishing isoforms and paralogs on the protein level. [Citation Graph (0, 0)][DBLP ] Journal ] Scott A. Becker , Nathan D. Price , Bernhard O. Palsson Metabolite coupling in genome-scale metabolic networks. [Citation Graph (0, 0)][DBLP ] Journal ] Hidenori Inaoka , Yutaka Fukuoka , Isaac S. Kohane Lower expression of genes near microRNA in C. elegans germline. [Citation Graph (0, 0)][DBLP ] Journal ] Kenzie D. MacIsaac , Ting Wang , D. Benjamin Gordon , David K. Gifford , Gary D. Stormo , Ernest Fraenkel An improved map of conserved regulatory sites for Saccharomyces cerevisiae . [Citation Graph (0, 0)][DBLP ] Journal ] Victor X. Jin , Gregory A. Singer , Francisco J. Agosto-Perez , Sandya Liyanarachchi , Ramana V. Davuluri Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs. [Citation Graph (0, 0)][DBLP ] Journal ] Chun Liang , Feng Sun , Haiming Wang , Junfeng Qu , Robert M. Freeman Jr , Lee H. Pratt , Marie-Michèle Cordonnier-Pratt MAGIC-SPP: a database-driven DNA sequence processing package with associated management tools. [Citation Graph (0, 0)][DBLP ] Journal ] Haiying Wang , Huiru Zheng , David Simpson , Francisco Azuaje Machine learning approaches to supporting the identification of photoreceptor-enriched genes based on expression data. [Citation Graph (0, 0)][DBLP ] Journal ] Zhengdong Zhang , George W. Jackson , George E. Fox , Richard C. Willson Microbial identification by mass cataloging. [Citation Graph (0, 0)][DBLP ] Journal ] Areejit Samal , Shalini Singh , Varun Giri , Sandeep Krishna , Nandula Raghuram , Sanjay Jain Low degree metabolites explain essential reactions and enhance modularity in biological networks. [Citation Graph (0, 0)][DBLP ] Journal ] Rainer König , Gunnar Schramm , Marcus Oswald , Hanna Seitz , Sebastian Sager , Marc Zapatka , Gerhard Reinelt , Roland Eils Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms. [Citation Graph (0, 0)][DBLP ] Journal ] Sebastiaan Horsman , Michael J. Moorhouse , Victor C. L. de Jager , Peter van der Spek , Frank Grosveld , John Strouboulis , Eleni Z. Katsantoni TF Target Mapper: A BLAST search tool for the identification of Transcription Factor target genes. [Citation Graph (0, 0)][DBLP ] Journal ] Maike Tech , Peter Meinicke An unsupervised classification scheme for improving predictions of prokaryotic TIS. [Citation Graph (0, 0)][DBLP ] Journal ] Xiaochen Bo , Shaoke Lou , Daochun Sun , Wenjie Shu , Jing Yang , Shengqi Wang Selection of antisense oligonucleotides based on multiple predicted target mRNA structures. [Citation Graph (0, 0)][DBLP ] Journal ] Harvey J. Motulsky , Ronald E. Brown Detecting outliers when fitting data with nonlinear regression - a new method based on robust nonlinear regression and the false discovery rate. [Citation Graph (0, 0)][DBLP ] Journal ] Jiangning Song , Kevin Burrage , Zheng Yuan , Thomas Huber Prediction of cis /trans isomerization in proteins using PSI-BLAST profiles and secondary structure information. [Citation Graph (0, 0)][DBLP ] Journal ] Michael Meissner , Michael Schmuker , Gisbert Schneider Optimized Particle Swarm Optimization (OPSO) and its application to artificial neural network training. [Citation Graph (0, 0)][DBLP ] Journal ] Richard J. Fox , Matthew W. Dimmic A two-sample Bayesian t -test for microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Ulrika Wickenberg-Bolin , Hanna Göransson , Mårten Fryknäs , Mats G. Gustafsson , Anders Isaksson Improved variance estimation of classification performance via reduction of bias caused by small sample size. [Citation Graph (0, 0)][DBLP ] Journal ] Ramazan Saeed , Charlotte M. Deane Protein protein interactions, evolutionary rate, abundance and age. [Citation Graph (0, 0)][DBLP ] Journal ] Robert Urbanczik SNA - a toolbox for the stoichiometric analysis of metabolic networks. [Citation Graph (0, 0)][DBLP ] Journal ] Takuji Yamada , Minoru Kanehisa , Susumu Goto Extraction of phylogenetic network modules from the metabolic network. [Citation Graph (0, 0)][DBLP ] Journal ] Irini A. Doytchinova , Pingping Guan , Darren R. Flower EpiJen: a server for multistep T cell epitope prediction. [Citation Graph (0, 0)][DBLP ] Journal ] Christian L. Barrett , Nathan D. Price , Bernhard O. Palsson Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition. [Citation Graph (0, 0)][DBLP ] Journal ] Yanni Sun , Jeremy Buhler Choosing the best heuristic for seeded alignment of DNA sequences. [Citation Graph (0, 0)][DBLP ] Journal ] Seo Young Kim , Jae Won Lee , Jong Sung Bae Effect of data normalization on fuzzy clustering of DNA microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Feng-Chi Chen , Chuang-Jong Chen , Jar-Yi Ho , Trees-Juen Chuang Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat. [Citation Graph (0, 0)][DBLP ] Journal ] Frank F. Millenaar , John Okyere , Sean T. May , Martijn van Zanten , Laurentius A. C. J. Voesenek , Anton J. M. Peeters How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results. [Citation Graph (0, 0)][DBLP ] Journal ] Min Lin , Rongling Wu A joint model for nonparametric functional mapping of longitudinal trajectory and time-to-event. [Citation Graph (0, 0)][DBLP ] Journal ] Yuliya V. Karpievitch , Jonas S. Almeida mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code. [Citation Graph (0, 0)][DBLP ] Journal ] Minsuk Lee , Weiqing Wang , Hong Yu Exploring supervised and unsupervised methods to detect topics in biomedical text. [Citation Graph (0, 0)][DBLP ] Journal ] Tilman Lamparter A computational approach to discovering the functions of bacterial phytochromes by analysis of homolog distributions. [Citation Graph (0, 0)][DBLP ] Journal ] Stephan Waack , Oliver Keller , Roman Asper , Thomas Brodag , Carsten Damm , Wolfgang Florian Fricke , Katharina Surovcik , Peter Meinicke , Rainer Merkl Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. [Citation Graph (0, 0)][DBLP ] Journal ] Rahul Siddharthan Sigma: multiple alignment of weakly-conserved non-coding DNA sequence. [Citation Graph (0, 0)][DBLP ] Journal ] Markus Seiler , Alexander Mehrle , Annemarie Poustka , Stefan Wiemann The 3of5 web application for complex and comprehensive pattern matching in protein sequences. [Citation Graph (0, 0)][DBLP ] Journal ] James Thompson , Shuba Gopal Genetic algorithm learning as a robust approach to RNA editing site prediction. [Citation Graph (0, 0)][DBLP ] Journal ] Aaron N. Chang , Jason McDermott , Zachary Frazier , Michal Guerquin , Ram Samudrala INTEGRATOR: interactive graphical search of large protein interactomes over the Web. [Citation Graph (0, 0)][DBLP ] Journal ] J. R. Semeiks , A. Rizki , Mina J. Bissell , I. Saira Mian Ensemble attribute profile clustering: discovering and characterizing groups of genes with similar patterns of biological features. [Citation Graph (0, 0)][DBLP ] Journal ] Wendy S. W. Wong , Raazesh Sainudiin , Rasmus Nielsen Identification of physicochemical selective pressure on protein encoding nucleotide sequences. [Citation Graph (0, 0)][DBLP ] Journal ] Kevin A. Greer , Matthew R. McReynolds , Heddwen L. Brooks , James B. Hoying CARMA: A platform for analyzing microarray datasets that incorporate replicate measures. [Citation Graph (0, 0)][DBLP ] Journal ] Colleen D. Behrsin , Chris J. Brandl , David W. Litchfield , Brian H. Shilton , Lindi M. Wahl Development of an unbiased statistical method for the analysis of unigenic evolution. [Citation Graph (0, 0)][DBLP ] Journal ] Jason M. Doherty , Lynn K. Carmichael , Jason C. Mills GOurmet: A tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions. [Citation Graph (0, 0)][DBLP ] Journal ] Kevin A. Snyder , Howard J. Feldman , Michel Dumontier , John J. Salama , Christopher W. V. Hogue Domain-based small molecule binding site annotation. [Citation Graph (0, 0)][DBLP ] Journal ] Huynh-Hoa Bui , John Sidney , Kenny Dinh , Scott Southwood , Mark J. Newman , Alessandro Sette Predicting population coverage of T-cell epitope-based diagnostics and vaccines. [Citation Graph (0, 0)][DBLP ] Journal ] Richard E. Kennedy , Kellie J. Archer , Michael F. 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