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Journals in DBLP

BMC Bioinformatics
2009, volume: 10, number:


  1. Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs. [Citation Graph (, )][DBLP]


  2. IRSS: a web-based tool for automatic layout and analysis of IRES secondary structure prediction and searching system in silico. [Citation Graph (, )][DBLP]


  3. PCI-SS: MISO dynamic nonlinear protein secondary structure prediction. [Citation Graph (, )][DBLP]


  4. Modeling the role of p53 pulses in DNA damage- induced cell death decision. [Citation Graph (, )][DBLP]


  5. Granger causality vs. dynamic Bayesian network inference: a comparative study. [Citation Graph (, )][DBLP]


  6. Quantitative measures for the management and comparison of annotated genomes. [Citation Graph (, )][DBLP]


  7. Unsupervised assessment of microarray data quality using a Gaussian mixture model. [Citation Graph (, )][DBLP]


  8. CNV-seq, a new method to detect copy number variation using high-throughput sequencing. [Citation Graph (, )][DBLP]


  9. MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study. [Citation Graph (, )][DBLP]


  10. Comparison of sequence-dependent tiling array normalization approaches. [Citation Graph (, )][DBLP]


  11. Kerfdr: a semi-parametric kernel-based approach to local false discovery rate estimation. [Citation Graph (, )][DBLP]


  12. Bayesian DNA copy number analysis. [Citation Graph (, )][DBLP]


  13. Accurate and fast methods to estimate the population mutation rate from error prone sequences. [Citation Graph (, )][DBLP]


  14. Integrated analysis of DNA copy number and gene expression microarray data using gene sets. [Citation Graph (, )][DBLP]


  15. A Bayesian approach to efficient differential allocation for resampling-based significance testing. [Citation Graph (, )][DBLP]


  16. The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations. [Citation Graph (, )][DBLP]


  17. Sample size calculation for microarray experiments with blocked one-way design. [Citation Graph (, )][DBLP]


  18. Platform dependence of inference on gene-wise and gene-set involvement in human lung development. [Citation Graph (, )][DBLP]


  19. Accounting for uncertainty when assessing association between copy number and disease: a latent class model. [Citation Graph (, )][DBLP]


  20. designGG: an R-package and web tool for the optimal design of genetical genomics experiments. [Citation Graph (, )][DBLP]


  21. Automated genome mining for natural products. [Citation Graph (, )][DBLP]


  22. ResBoost: characterizing and predicting catalytic residues in enzymes. [Citation Graph (, )][DBLP]


  23. Data-driven normalization strategies for high-throughput quantitative RT-PCR. [Citation Graph (, )][DBLP]


  24. NIFTI: An evolutionary approach for finding number of clusters in microarray data. [Citation Graph (, )][DBLP]


  25. A realistic assessment of methods for extracting gene/protein interactions from free text. [Citation Graph (, )][DBLP]


  26. RNAslider: a faster engine for consecutive windows folding and its application to the analysis of genomic folding asymmetry. [Citation Graph (, )][DBLP]


  27. Most parsimonious haplotype allele sharing determination. [Citation Graph (, )][DBLP]


  28. A fast and efficient gene-network reconstruction method from multiple over-expression experiments. [Citation Graph (, )][DBLP]


  29. QSRA - a quality-value guided de novo short read assembler. [Citation Graph (, )][DBLP]


  30. Characterisation and correction of signal fluctuations in successive acquisitions of microarray images. [Citation Graph (, )][DBLP]


  31. A statistical framework to evaluate virtual screening. [Citation Graph (, )][DBLP]


  32. mbs: modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection. [Citation Graph (, )][DBLP]


  33. On validation and invalidation of biological models. [Citation Graph (, )][DBLP]


  34. PCOPGene-Net: Holistic Characterisation of cellular states from microarray data based on continuous and non-continuous analysis of gene-expression relationships. [Citation Graph (, )][DBLP]


  35. Identifying set-wise differential co-expression in gene expression microarray data. [Citation Graph (, )][DBLP]


  36. SNP HiTLink: a high-throughput linkage analysis system employing dense SNP data. [Citation Graph (, )][DBLP]


  37. TableButler - A tool for combining, handling and processing of huge data tables. [Citation Graph (, )][DBLP]


  38. Iterative Bayesian Model Averaging: a method for the application of survival analysis to high-dimensional microarray data. [Citation Graph (, )][DBLP]


  39. Statistical identification of gene association by CID in application of constructing ER regulatory network. [Citation Graph (, )][DBLP]


  40. Clique-based data mining for related genes in a biomedical database. [Citation Graph (, )][DBLP]


  41. Transcriptional programs: Modelling higher order structure in transcriptional control. [Citation Graph (, )][DBLP]


  42. The PHA Depolymerase Engineering Database: A systematic analysis tool for the diverse family of polyhydroxyalkanoate (PHA) depolymerases. [Citation Graph (, )][DBLP]


  43. TOMOBFLOW: feature-preserving noise filtering for electron tomography. [Citation Graph (, )][DBLP]


  44. Island method for estimating the statistical significance of profile-profile alignment scores. [Citation Graph (, )][DBLP]


  45. flowClust: a Bioconductor package for automated gating of flow cytometry data. [Citation Graph (, )][DBLP]


  46. Automated FingerPrint Background removal: FPB. [Citation Graph (, )][DBLP]


  47. BFL: a node and edge betweenness based fast layout algorithm for large scale networks. [Citation Graph (, )][DBLP]


  48. Robust discovery of periodically expressed genes using the laplace periodogram. [Citation Graph (, )][DBLP]


  49. VASCo: computation and visualization of annotated protein surface contacts. [Citation Graph (, )][DBLP]


  50. FuGEFlow: data model and markup language for flow cytometry. [Citation Graph (, )][DBLP]


  51. Application of multiple statistical tests to enhance mass spectrometry-based biomarker discovery. [Citation Graph (, )][DBLP]


  52. FlyPhy: a phylogenomic analysis platform for Drosophila genes and gene families. [Citation Graph (, )][DBLP]


  53. Disease candidate gene identification and prioritization using protein interaction networks. [Citation Graph (, )][DBLP]


  54. Construction and use of gene expression covariation matrix. [Citation Graph (, )][DBLP]


  55. An introduction to scripting in Ruby for biologists. [Citation Graph (, )][DBLP]


  56. Transmembrane protein topology prediction using support vector machines. [Citation Graph (, )][DBLP]


  57. A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling. [Citation Graph (, )][DBLP]


  58. TransCent: Computational enzyme design by transferring active sites and considering constraints relevant for catalysis. [Citation Graph (, )][DBLP]


  59. Comparison of small n statistical tests of differential expression applied to microarrays. [Citation Graph (, )][DBLP]


  60. Selecting control genes for RT-QPCR using public microarray data. [Citation Graph (, )][DBLP]


  61. Generating rate equations for complex enzyme systems by a computer-assisted systematic method. [Citation Graph (, )][DBLP]


  62. Statistical and visual differentiation of subcellular imaging. [Citation Graph (, )][DBLP]


  63. Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology. [Citation Graph (, )][DBLP]


  64. Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning. [Citation Graph (, )][DBLP]


  65. CLEAN: CLustering Enrichment ANalysis. [Citation Graph (, )][DBLP]


  66. A joint finite mixture model for clustering genes from independent Gaussian and beta distributed data. [Citation Graph (, )][DBLP]


  67. Large-scale prediction of long disordered regions in proteins using random forests. [Citation Graph (, )][DBLP]


  68. PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data. [Citation Graph (, )][DBLP]


  69. Filtering for increased power for microarray data analysis. [Citation Graph (, )][DBLP]


  70. In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles. [Citation Graph (, )][DBLP]


  71. Markov clustering versus affinity propagation for the partitioning of protein interaction graphs. [Citation Graph (, )][DBLP]


  72. CURE-Chloroplast: A chloroplast C-to-U RNA editing predictor for seed plants. [Citation Graph (, )][DBLP]


  73. Willows: a memory efficient tree and forest construction package. [Citation Graph (, )][DBLP]


  74. "GenotypeColourTM": colour visualisation of SNPs and CNVs. [Citation Graph (, )][DBLP]


  75. DOTcvpSB, a software toolbox for dynamic optimization in systems biology. [Citation Graph (, )][DBLP]


  76. JNets: Exploring networks by integrating annotation. [Citation Graph (, )][DBLP]


  77. Analyses of domains and domain fusions in human proto-oncogenes. [Citation Graph (, )][DBLP]


  78. Automated Alphabet Reduction for Protein Datasets. [Citation Graph (, )][DBLP]


  79. Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity. [Citation Graph (, )][DBLP]


  80. A core-attachment based method to detect protein complexes in PPI networks. [Citation Graph (, )][DBLP]


  81. Predicting genetic interactions with random walks on biological networks. [Citation Graph (, )][DBLP]


  82. Improved ChIP-chip analysis by a mixture model approach. [Citation Graph (, )][DBLP]


  83. RankAggreg, an R package for weighted rank aggregation. [Citation Graph (, )][DBLP]


  84. GAGE: generally applicable gene set enrichment for pathway analysis. [Citation Graph (, )][DBLP]


  85. BRNI: Modular analysis of transcriptional regulatory programs. [Citation Graph (, )][DBLP]


  86. The Genome Reverse Compiler: an explorative annotation tool. [Citation Graph (, )][DBLP]


  87. Thermodynamic scaling behavior in genechips. [Citation Graph (, )][DBLP]


  88. Resolving deconvolution ambiguity in gene alternative splicing. [Citation Graph (, )][DBLP]


  89. Genotyping and inflated type I error rate in genome-wide association case/control studies. [Citation Graph (, )][DBLP]


  90. Ultra-Structure database design methodology for managing systems biology data and analyses. [Citation Graph (, )][DBLP]


  91. A compartmentalized approach to the assembly of physical maps. [Citation Graph (, )][DBLP]


  92. A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests. [Citation Graph (, )][DBLP]


  93. RGG: A general GUI Framework for R scripts. [Citation Graph (, )][DBLP]


  94. geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research. [Citation Graph (, )][DBLP]


  95. eCOMPAGT - efficient Combination and Management of Phenotypes and Genotypes for Genetic Epidemiology. [Citation Graph (, )][DBLP]


  96. Algorithm of OMA for large-scale orthology inference. [Citation Graph (, )][DBLP]


  97. The textual characteristics of traditional and Open Access scientific journals are similar. [Citation Graph (, )][DBLP]


  98. Seq4SNPs: new software for retrieval of multiple, accurately annotated DNA sequences, ready formatted for SNP assay design. [Citation Graph (, )][DBLP]


  99. MIMAS 3.0 is a Multiomics Information Management and Annotation System. [Citation Graph (, )][DBLP]


  100. Optimized ancestral state reconstruction using Sankoff parsimony. [Citation Graph (, )][DBLP]


  101. An XML transfer schema for exchange of genomic and genetic mapping data: implementation as a web service in a Taverna workflow. [Citation Graph (, )][DBLP]


  102. Tableau-based protein substructure search using quadratic programming. [Citation Graph (, )][DBLP]


  103. Prediction of nuclear proteins using SVM and HMM models. [Citation Graph (, )][DBLP]


  104. Identification of differentially expressed subnetworks based on multivariate ANOVA. [Citation Graph (, )][DBLP]


  105. Bayesian clustering and feature selection for cancer tissue samples. [Citation Graph (, )][DBLP]


  106. Information management for high content live cell imaging. [Citation Graph (, )][DBLP]


  107. CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome? [Citation Graph (, )][DBLP]


  108. Survey-based naming conventions for use in OBO Foundry ontology development. [Citation Graph (, )][DBLP]


  109. Detecting intergene correlation changes in microarray analysis: a new approach to gene selection. [Citation Graph (, )][DBLP]


  110. SDRF2GRAPH - a visualization tool of a spreadsheet-based description of experimental processes. [Citation Graph (, )][DBLP]


  111. A reexamination of information theory-based methods for DNA-binding site identification. [Citation Graph (, )][DBLP]


  112. POINeT: protein interactome with sub-network analysis and hub prioritization. [Citation Graph (, )][DBLP]


  113. Linked region detection using high-density SNP genotype data via the minimum recombinant model of pedigree haplotype inference. [Citation Graph (, )][DBLP]


  114. A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data. [Citation Graph (, )][DBLP]


  115. Triangle network motifs predict complexes by complementing high-error interactomes with structural information. [Citation Graph (, )][DBLP]


  116. TCP: a tool for designing chimera proteins based on the tertiary structure information. [Citation Graph (, )][DBLP]


  117. On finding minimal absent words. [Citation Graph (, )][DBLP]


  118. An effective docking strategy for virtual screening based on multi-objective optimization algorithm. [Citation Graph (, )][DBLP]


  119. EvoRSR: an integrated system for exploring evolution of RNA structural robustness. [Citation Graph (, )][DBLP]


  120. Multichromosomal median and halving problems under different genomic distances. [Citation Graph (, )][DBLP]


  121. Local alignment of two-base encoded DNA sequence. [Citation Graph (, )][DBLP]


  122. Profile analysis and prediction of tissue-specific CpG island methylation classes. [Citation Graph (, )][DBLP]


  123. OrthoSelect: a protocol for selecting orthologous groups in phylogenomics. [Citation Graph (, )][DBLP]


  124. T-REX: software for the processing and analysis of T-RFLP data. [Citation Graph (, )][DBLP]


  125. Differential splicing using whole-transcript microarrays. [Citation Graph (, )][DBLP]


  126. GLOSSI: a method to assess the association of genetic loci-sets with complex diseases. [Citation Graph (, )][DBLP]


  127. Validating subcellular localization prediction tools with mycobacterial proteins. [Citation Graph (, )][DBLP]


  128. The High Throughput Sequence Annotation Service (HT-SAS) - the shortcut from sequence to true Medline words. [Citation Graph (, )][DBLP]


  129. Improved results in proteomics by use of local and peptide-class specific false discovery rates. [Citation Graph (, )][DBLP]


  130. Analyzing miRNA co-expression networks to explore TF-miRNA regulation. [Citation Graph (, )][DBLP]


  131. Automics: an integrated platform for NMR-based metabonomics spectral processing and data analysis. [Citation Graph (, )][DBLP]


  132. GMFilter and SXTestPlate: software tools for improving the SNPlexTM genotyping system. [Citation Graph (, )][DBLP]


  133. ContDist: a tool for the analysis of quantitative gene and promoter properties. [Citation Graph (, )][DBLP]


  134. flowCore: a Bioconductor package for high throughput flow cytometry. [Citation Graph (, )][DBLP]


  135. Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens. [Citation Graph (, )][DBLP]


  136. An improved ontological representation of dendritic cells as a paradigm for all cell types. [Citation Graph (, )][DBLP]


  137. Identifying differential exon splicing using linear models and correlation coefficients. [Citation Graph (, )][DBLP]


  138. EMMA 2 - A MAGE-compliant system for the collaborative analysis and integration of microarray data. [Citation Graph (, )][DBLP]


  139. Assessing and selecting gene expression signals based upon the quality of the measured dynamics. [Citation Graph (, )][DBLP]


  140. Fpocket: An open source platform for ligand pocket detection. [Citation Graph (, )][DBLP]


  141. Incorporating rich background knowledge for gene named entity classification and recognition. [Citation Graph (, )][DBLP]


  142. Measure of synonymous codon usage diversity among genes in bacteria. [Citation Graph (, )][DBLP]


  143. The development of a comparison approach for Illumina bead chips unravels unexpected challenges applying newest generation microarrays. [Citation Graph (, )][DBLP]


  144. Estimation of tumor heterogeneity using CGH array data. [Citation Graph (, )][DBLP]


  145. Structural motifs recurring in different folds recognize the same ligand fragments. [Citation Graph (, )][DBLP]


  146. Combining specificity determining and conserved residues improves functional site prediction. [Citation Graph (, )][DBLP]


  147. The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation. [Citation Graph (, )][DBLP]


  148. Computing paths and cycles in biological interaction graphs. [Citation Graph (, )][DBLP]


  149. Extracting biologically significant patterns from short time series gene expression data. [Citation Graph (, )][DBLP]


  150. Effect of false positive and false negative rates on inference of binding target conservation across different conditions and species from ChIP-chip data. [Citation Graph (, )][DBLP]


  151. GenomeGraphs: integrated genomic data visualization with R. [Citation Graph (, )][DBLP]


  152. STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design. [Citation Graph (, )][DBLP]


  153. "PolyMin": software for identification of the minimum number of polymorphisms required for haplotype and genotype differentiation. [Citation Graph (, )][DBLP]


  154. EDGAR: A software framework for the comparative analysis of prokaryotic genomes. [Citation Graph (, )][DBLP]


  155. Orymold: ontology based gene expression data integration and analysis tool applied to rice. [Citation Graph (, )][DBLP]


  156. DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data. [Citation Graph (, )][DBLP]


  157. BSMAP: whole genome bisulfite sequence MAPping program. [Citation Graph (, )][DBLP]


  158. R/BHC: fast Bayesian hierarchical clustering for microarray data. [Citation Graph (, )][DBLP]


  159. Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy. [Citation Graph (, )][DBLP]


  160. Computational analysis of the interaction between transcription factors and the predicted secreted proteome of the yeast Kluyveromyces lactis. [Citation Graph (, )][DBLP]


  161. Bayesian optimal discovery procedure for simultaneous significance testing. [Citation Graph (, )][DBLP]


  162. Prediction of guide strand of microRNAs from its sequence and secondary structure. [Citation Graph (, )][DBLP]


  163. Motivated Proteins: A web application for studying small three-dimensional protein motifs. [Citation Graph (, )][DBLP]


  164. ETISEQ - an algorithm for automated elution time ion sequencing of concurrently fragmented peptides for mass spectrometry-based proteomics. [Citation Graph (, )][DBLP]


  165. Information criterion-based clustering with order-restricted candidate profiles in short time-course microarray experiments. [Citation Graph (, )][DBLP]


  166. Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach. [Citation Graph (, )][DBLP]


  167. A bag-of-words approach for Drosophila gene expression pattern annotation. [Citation Graph (, )][DBLP]


  168. IDSS: deformation invariant signatures for molecular shape comparison. [Citation Graph (, )][DBLP]


  169. CSA: An efficient algorithm to improve circular DNA multiple alignment. [Citation Graph (, )][DBLP]


  170. Accessibility and partner number of protein residues, their relationship and a webserver, ContPlot for their display. [Citation Graph (, )][DBLP]


  171. Incorporating functional inter-relationships into protein function prediction algorithms. [Citation Graph (, )][DBLP]


  172. Regularized gene selection in cancer microarray meta-analysis. [Citation Graph (, )][DBLP]


  173. Adaptable data management for systems biology investigations. [Citation Graph (, )][DBLP]


  174. Ab initio and homology based prediction of protein domains by recursive neural networks. [Citation Graph (, )][DBLP]


  175. Effects of sample size on robustness and prediction accuracy of a prognostic gene signature. [Citation Graph (, )][DBLP]


  176. Is searching full text more effective than searching abstracts? [Citation Graph (, )][DBLP]


  177. Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis. [Citation Graph (, )][DBLP]


  178. Core Hunter: an algorithm for sampling genetic resources based on multiple genetic measures. [Citation Graph (, )][DBLP]


  179. Representative transcript sets for evaluating a translational initiation sites predictor. [Citation Graph (, )][DBLP]


  180. OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif. [Citation Graph (, )][DBLP]


  181. Prediction of protein-protein interaction types using association rule based classification. [Citation Graph (, )][DBLP]


  182. Cyndi: a multi-objective evolution algorithm based method for bioactive molecular conformational generation. [Citation Graph (, )][DBLP]


  183. Robust MS quantification method for phospho-peptides using 18O/16O labeling. [Citation Graph (, )][DBLP]


  184. Identifying significant temporal variation in time course microarray data without replicates. [Citation Graph (, )][DBLP]


  185. Incorporating pathway information into boosting estimation of high-dimensional risk prediction models. [Citation Graph (, )][DBLP]


  186. Improved homology-driven computational validation of protein-protein interactions motivated by the evolutionary gene duplication and divergence hypothesis. [Citation Graph (, )][DBLP]


  187. NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction. [Citation Graph (, )][DBLP]


  188. Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology. [Citation Graph (, )][DBLP]


  189. Improving the analysis of designed studies by combining statistical modelling with study design information. [Citation Graph (, )][DBLP]


  190. SNAD: Sequence Name Annotation-based Designer. [Citation Graph (, )][DBLP]


  191. Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. [Citation Graph (, )][DBLP]


  192. ACID: annotation of cassette and integron data. [Citation Graph (, )][DBLP]


  193. An assessment of false discovery rates and statistical significance in label-free quantitative proteomics with combined filters. [Citation Graph (, )][DBLP]


  194. Sample entropy analysis of cervical neoplasia gene-expression signatures. [Citation Graph (, )][DBLP]


  195. Estimating parameters for generalized mass action models with connectivity information. [Citation Graph (, )][DBLP]


  196. Gene set-based module discovery in the breast cancer transcriptome. [Citation Graph (, )][DBLP]


  197. Genotype determination for polymorphisms in linkage disequilibrium. [Citation Graph (, )][DBLP]


  198. Marker-free image registration of electron tomography tilt-series. [Citation Graph (, )][DBLP]


  199. Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis. [Citation Graph (, )][DBLP]


  200. A comparison on effects of normalisations in the detection of differentially expressed genes. [Citation Graph (, )][DBLP]


  201. Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis. [Citation Graph (, )][DBLP]


  202. TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. [Citation Graph (, )][DBLP]


  203. Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation. [Citation Graph (, )][DBLP]


  204. Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data. [Citation Graph (, )][DBLP]


  205. Evaluating the impact of scoring parameters on the structure of intra-specific genetic variation using RawGeno, an R package for automating AFLP scoring. [Citation Graph (, )][DBLP]


  206. A new regularized least squares support vector regression for gene selection. [Citation Graph (, )][DBLP]


  207. A structured overview of simultaneous component based data integration. [Citation Graph (, )][DBLP]


  208. Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses. [Citation Graph (, )][DBLP]


  209. Regression based predictor for p53 transactivation. [Citation Graph (, )][DBLP]


  210. Sparse canonical methods for biological data integration: application to a cross-platform study. [Citation Graph (, )][DBLP]


  211. dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation. [Citation Graph (, )][DBLP]


  212. Outcome prediction based on microarray analysis: a critical perspective on methods. [Citation Graph (, )][DBLP]


  213. ArrayIDer: automated structural re-annotation pipeline for DNA microarrays. [Citation Graph (, )][DBLP]


  214. Enzyme classification with peptide programs: a comparative study. [Citation Graph (, )][DBLP]


  215. EFICAz2: enzyme function inference by a combined approach enhanced by machine learning. [Citation Graph (, )][DBLP]


  216. Using least median of squares for structural superposition of flexible proteins. [Citation Graph (, )][DBLP]


  217. Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes. [Citation Graph (, )][DBLP]


  218. Ensemble approach to predict specificity determinants: benchmarking and validation. [Citation Graph (, )][DBLP]


  219. The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes. [Citation Graph (, )][DBLP]


  220. GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. [Citation Graph (, )][DBLP]


  221. Supervised learning for the automated transcription of spacer classification from spoligotype films. [Citation Graph (, )][DBLP]


  222. Infrastructure for the life sciences: design and implementation of the UniProt website. [Citation Graph (, )][DBLP]


  223. A general modular framework for gene set enrichment analysis. [Citation Graph (, )][DBLP]


  224. Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels. [Citation Graph (, )][DBLP]


  225. Edge detection in microscopy images using curvelets. [Citation Graph (, )][DBLP]


  226. Improving classification in protein structure databases using text mining. [Citation Graph (, )][DBLP]


  227. Structure-based substrate screening for an enzyme. [Citation Graph (, )][DBLP]


  228. Error statistics of hidden Markov model and hidden Boltzmann model results. [Citation Graph (, )][DBLP]


  229. On reliable discovery of molecular signatures. [Citation Graph (, )][DBLP]


  230. PanGEA: Identification of allele specific gene expression using the 454 technology. [Citation Graph (, )][DBLP]


  231. FISim: A new similarity measure between transcription factor binding sites based on the fuzzy integral. [Citation Graph (, )][DBLP]


  232. ProtSA: a web application for calculating sequence specific protein solvent accessibilities in the unfolded ensemble. [Citation Graph (, )][DBLP]


  233. puma: a Bioconductor package for propagating uncertainty in microarray analysis. [Citation Graph (, )][DBLP]


  234. New scoring schema for finding motifs in DNA Sequences. [Citation Graph (, )][DBLP]


  235. OrthoClusterDB: an online platform for synteny blocks. [Citation Graph (, )][DBLP]


  236. A-MADMAN: Annotation-based microarray data meta-analysis tool. [Citation Graph (, )][DBLP]


  237. Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees. [Citation Graph (, )][DBLP]


  238. Detection of discriminative sequence patterns in the neighborhood of proline cis peptide bonds and their functional annotation. [Citation Graph (, )][DBLP]


  239. Improved analysis of bacterial CGH data beyond the log-ratio paradigm. [Citation Graph (, )][DBLP]


  240. Protein domain organisation: adding order. [Citation Graph (, )][DBLP]


  241. Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'. [Citation Graph (, )][DBLP]


  242. Inverse Langmuir method for oligonucleotide microarray analysis. [Citation Graph (, )][DBLP]


  243. OnEX: Exploring changes in life science ontologies. [Citation Graph (, )][DBLP]


  244. sscMap: An extensible Java application for connecting small-molecule drugs using gene-expression signatures. [Citation Graph (, )][DBLP]


  245. Performance of random forest when SNPs are in linkage disequilibrium. [Citation Graph (, )][DBLP]


  246. Biological sequences as pictures - a generic two dimensional solution for iterated maps. [Citation Graph (, )][DBLP]


  247. Protein-protein interaction based on pairwise similarity. [Citation Graph (, )][DBLP]


  248. Iterative refinement of structure-based sequence alignments by Seed Extension. [Citation Graph (, )][DBLP]


  249. Filtering Genes for Cluster and Network Analysis. [Citation Graph (, )][DBLP]


  250. mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics. [Citation Graph (, )][DBLP]


  251. Modeling genomic data with type attributes, balancing stability and maintainability. [Citation Graph (, )][DBLP]


  252. Genome Projector: zoomable genome map with multiple views. [Citation Graph (, )][DBLP]


  253. MarVis: a tool for clustering and visualization of metabolic biomarkers. [Citation Graph (, )][DBLP]


  254. MBA: a literature mining system for extracting biomedical abbreviations. [Citation Graph (, )][DBLP]


  255. SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip. [Citation Graph (, )][DBLP]


  256. An innovative approach for testing bioinformatics programs using metamorphic testing. [Citation Graph (, )][DBLP]


  257. How to find simple and accurate rules for viral protease cleavage specificities. [Citation Graph (, )][DBLP]


  258. p3d - Python module for structural bioinformatics. [Citation Graph (, )][DBLP]


  259. Ovarian cancer detection from metabolomic liquid chromatography/mass spectrometry data by support vector machines. [Citation Graph (, )][DBLP]


  260. MULTI-K: accurate classification of microarray subtypes using ensemble k-means clustering. [Citation Graph (, )][DBLP]


  261. Computing power of quantitative trait locus association mapping for haploid loci. [Citation Graph (, )][DBLP]


  262. Integrative modeling of transcriptional regulation in response to antirheumatic therapy. [Citation Graph (, )][DBLP]


  263. Assessing the druggability of protein-protein interactions by a supervised machine-learning method. [Citation Graph (, )][DBLP]


  264. GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction. [Citation Graph (, )][DBLP]


  265. dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface. [Citation Graph (, )][DBLP]


  266. Genoviz Software Development Kit: Java tool kit for building genomics visualization applications. [Citation Graph (, )][DBLP]


  267. Enhanced protein fold recognition through a novel data integration approach. [Citation Graph (, )][DBLP]


  268. QPCR: Application for real-time PCR data management and analysis. [Citation Graph (, )][DBLP]


  269. Global haplotype partitioning for maximal associated SNP pairs. [Citation Graph (, )][DBLP]


  270. A reliable measure of similarity based on dependency for short time series: an application to gene expression networks. [Citation Graph (, )][DBLP]


  271. An iterative strategy combining biophysical criteria and duration hidden Markov models for structural predictions of Chlamydia trachomatis sigma66 promoters. [Citation Graph (, )][DBLP]


  272. Correlating gene and protein expression data using Correlated Factor Analysis. [Citation Graph (, )][DBLP]


  273. The B6 database: a tool for the description and classification of vitamin B6-dependent enzymatic activities and of the corresponding protein families. [Citation Graph (, )][DBLP]


  274. MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction. [Citation Graph (, )][DBLP]


  275. Comparative study of gene set enrichment methods. [Citation Graph (, )][DBLP]


  276. Regression applied to protein binding site prediction and comparison with classification. [Citation Graph (, )][DBLP]


  277. Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach. [Citation Graph (, )][DBLP]


  278. Genephony: a knowledge management tool for genome-wide research. [Citation Graph (, )][DBLP]


  279. XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services. [Citation Graph (, )][DBLP]


  280. EDGE3: A web-based solution for management and analysis of Agilent two color microarray experiments. [Citation Graph (, )][DBLP]


  281. Context-driven discovery of gene cassettes in mobile integrons using a computational grammar. [Citation Graph (, )][DBLP]


  282. Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics. [Citation Graph (, )][DBLP]


  283. RRW: repeated random walks on genome-scale protein networks for local cluster discovery. [Citation Graph (, )][DBLP]


  284. CASSIOPE: An expert system for conserved regions searches. [Citation Graph (, )][DBLP]


  285. Feature selection environment for genomic applications. [Citation Graph (, )][DBLP]


  286. ICRPfinder: a fast pattern design algorithm for coding sequences and its application in finding potential restriction enzyme recognition sites. [Citation Graph (, )][DBLP]


  287. Epitopia: a web-server for predicting B-cell epitopes. [Citation Graph (, )][DBLP]


  288. Exploratory and inferential analysis of gene cluster neighborhood graphs. [Citation Graph (, )][DBLP]


  289. In Silico screening for functional candidates amongst hypothetical proteins. [Citation Graph (, )][DBLP]


  290. Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information. [Citation Graph (, )][DBLP]


  291. Automated seeding of specialised wiki knowledgebases with BioKb. [Citation Graph (, )][DBLP]


  292. A first principles approach to differential expression in microarray data analysis. [Citation Graph (, )][DBLP]


  293. Efficient oligonucleotide probe selection for pan-genomic tiling arrays. [Citation Graph (, )][DBLP]


  294. Detecting purely epistatic multi-locus interactions by an omnibus permutation test on ensembles of two-locus analyses. [Citation Graph (, )][DBLP]


  295. Accurate microRNA target prediction correlates with protein repression levels. [Citation Graph (, )][DBLP]


  296. NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction. [Citation Graph (, )][DBLP]


  297. Finding local communities in protein networks. [Citation Graph (, )][DBLP]


  298. PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees. [Citation Graph (, )][DBLP]


  299. BayesPeak: Bayesian analysis of ChIP-seq data. [Citation Graph (, )][DBLP]


  300. RCMAT: a regularized covariance matrix approach to testing gene sets. [Citation Graph (, )][DBLP]


  301. Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum. [Citation Graph (, )][DBLP]


  302. Prediction of antigenic epitopes on protein surfaces by consensus scoring. [Citation Graph (, )][DBLP]


  303. The first step in the development of text mining technology for cancer risk assessment: identifying and organizing scientific evidence in risk assessment literature. [Citation Graph (, )][DBLP]


  304. MicroarrayDesigner: an online search tool and repository for near-optimal microarray experimental designs. [Citation Graph (, )][DBLP]


  305. Strategies for analyzing highly enriched IP-chip datasets. [Citation Graph (, )][DBLP]


  306. A methodology for the analysis of differential coexpression across the human lifespan. [Citation Graph (, )][DBLP]


  307. Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function. [Citation Graph (, )][DBLP]


  308. Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously. [Citation Graph (, )][DBLP]


  309. SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services. [Citation Graph (, )][DBLP]


  310. Basic properties and information theory of Audic-Claverie statistic for analyzing cDNA arrays. [Citation Graph (, )][DBLP]


  311. Challenges for automatically extracting molecular interactions from full-text articles. [Citation Graph (, )][DBLP]


  312. Predicting protein-protein binding sites in membrane proteins. [Citation Graph (, )][DBLP]


  313. Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics. [Citation Graph (, )][DBLP]


  314. MetaTM - a consensus method for transmembrane protein topology prediction. [Citation Graph (, )][DBLP]


  315. Sparse canonical correlation analysis for identifying, connecting and completing gene-expression networks. [Citation Graph (, )][DBLP]


  316. Unsupervised statistical clustering of environmental shotgun sequences. [Citation Graph (, )][DBLP]


  317. Enhancing navigation in biomedical databases by community voting and database-driven text classification. [Citation Graph (, )][DBLP]


  318. Kavosh: a new algorithm for finding network motifs. [Citation Graph (, )][DBLP]


  319. Generation of Gene Ontology benchmark datasets with various types of positive signal. [Citation Graph (, )][DBLP]


  320. BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature. [Citation Graph (, )][DBLP]


  321. Discovering multiple realistic TFBS motifs based on a generalized model. [Citation Graph (, )][DBLP]


  322. Deterministic Effects Propagation Networks for reconstructing protein signaling networks from multiple interventions. [Citation Graph (, )][DBLP]


  323. A stochastic context free grammar based framework for analysis of protein sequences. [Citation Graph (, )][DBLP]


  324. KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database. [Citation Graph (, )][DBLP]


  325. Riboswitch Detection Using Profile Hidden Markov Models. [Citation Graph (, )][DBLP]


  326. Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD). [Citation Graph (, )][DBLP]


  327. VANLO - Interactive visual exploration of aligned biological networks. [Citation Graph (, )][DBLP]


  328. miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression. [Citation Graph (, )][DBLP]


  329. PLAST: parallel local alignment search tool for database comparison. [Citation Graph (, )][DBLP]


  330. BASE - 2nd generation software for microarray data management and analysis. [Citation Graph (, )][DBLP]


  331. ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery. [Citation Graph (, )][DBLP]


  332. STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. [Citation Graph (, )][DBLP]


  333. Phylogenetic analysis of modularity in protein interaction networks. [Citation Graph (, )][DBLP]


  334. Magallanes: a web services discovery and automatic workflow composition tool. [Citation Graph (, )][DBLP]


  335. Clustering of protein domains for functional and evolutionary studies. [Citation Graph (, )][DBLP]


  336. A permutation-based multiple testing method for time-course microarray experiments. [Citation Graph (, )][DBLP]


  337. Classification and biomarker identification using gene network modules and support vector machines. [Citation Graph (, )][DBLP]


  338. Predicting dihedral angle probability distributions for protein coil residues from primary sequence using neural networks. [Citation Graph (, )][DBLP]


  339. Transcription factor site dependencies in human, mouse and rat genomes. [Citation Graph (, )][DBLP]


  340. Integrating functional genomics data using maximum likelihood based simultaneous component analysis. [Citation Graph (, )][DBLP]


  341. Exploiting structural and topological information to improve prediction of RNA-protein binding sites. [Citation Graph (, )][DBLP]


  342. iQuantitator: A tool for protein expression inference using iTRAQ. [Citation Graph (, )][DBLP]


  343. Bayesian inference of biochemical kinetic parameters using the linear noise approximation. [Citation Graph (, )][DBLP]


  344. TIde: a software for the systematic scanning of drug targets in kinetic network models. [Citation Graph (, )][DBLP]


  345. BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors. [Citation Graph (, )][DBLP]


  346. Arabidopsis gene co-expression network and its functional modules. [Citation Graph (, )][DBLP]


  347. Direct calibration of PICKY-designed microarrays. [Citation Graph (, )][DBLP]


  348. GIFtS: annotation landscape analysis with GeneCards. [Citation Graph (, )][DBLP]


  349. Construction of an annotated corpus to support biomedical information extraction. [Citation Graph (, )][DBLP]


  350. Local cell metrics: a novel method for analysis of cell-cell interactions. [Citation Graph (, )][DBLP]


  351. A structure filter for the Eukaryotic Linear Motif Resource. [Citation Graph (, )][DBLP]


  352. Bayesian modeling of ChIP-chip data using latent variables. [Citation Graph (, )][DBLP]


  353. Time warping of evolutionary distant temporal gene expression data based on noise suppression. [Citation Graph (, )][DBLP]


  354. Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB. [Citation Graph (, )][DBLP]


  355. Stratification of co-evolving genomic groups using ranked phylogenetic profiles. [Citation Graph (, )][DBLP]


  356. phyloXML: XML for evolutionary biology and comparative genomics. [Citation Graph (, )][DBLP]


  357. AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses. [Citation Graph (, )][DBLP]


  358. ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization. [Citation Graph (, )][DBLP]


  359. Analysis and comparison of very large metagenomes with fast clustering and functional annotation. [Citation Graph (, )][DBLP]


  360. Inferring within-patient HIV-1 evolutionary dynamics under anti-HIV therapy using serial virus samples with vSPA. [Citation Graph (, )][DBLP]


  361. Predicting sulfotyrosine sites using the random forest algorithm with significantly improved prediction accuracy. [Citation Graph (, )][DBLP]


  362. BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing. [Citation Graph (, )][DBLP]


  363. A novel R-package graphic user interface for the analysis of metabonomic profiles. [Citation Graph (, )][DBLP]


  364. multiplierz: an extensible API based desktop environment for proteomics data analysis. [Citation Graph (, )][DBLP]


  365. Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods. [Citation Graph (, )][DBLP]


  366. (PS)2-v2: template-based protein structure prediction server. [Citation Graph (, )][DBLP]


  367. GLIDERS - A web-based search engine for genome-wide linkage disequilibrium between HapMap SNPs. [Citation Graph (, )][DBLP]


  368. A biosegmentation benchmark for evaluation of bioimage analysis methods. [Citation Graph (, )][DBLP]


  369. RNA folding on the 3D triangular lattice. [Citation Graph (, )][DBLP]


  370. Elucidation of functional consequences of signalling pathway interactions. [Citation Graph (, )][DBLP]


  371. An empirical Bayesian approach for model-based inference of cellular signaling networks. [Citation Graph (, )][DBLP]


  372. Illumina WG-6 BeadChip strips should be normalized separately. [Citation Graph (, )][DBLP]


  373. A theoretical approach to spot active regions in antimicrobial proteins. [Citation Graph (, )][DBLP]


  374. Linguistic feature analysis for protein interaction extraction. [Citation Graph (, )][DBLP]


  375. A generic algorithm for layout of biological networks. [Citation Graph (, )][DBLP]


  376. Algorithms for effective querying of compound graph-based pathway databases. [Citation Graph (, )][DBLP]


  377. The ontology of biological sequences. [Citation Graph (, )][DBLP]


  378. Nonlinear preprocessing method for detecting peaks from gas chromatograms. [Citation Graph (, )][DBLP]


  379. SitesIdentify: a protein functional site prediction tool. [Citation Graph (, )][DBLP]


  380. An experimental loop design for the detection of constitutional chromosomal aberrations by array CGH. [Citation Graph (, )][DBLP]


  381. Prediction of protein binding sites in protein structures using hidden Markov support vector machine. [Citation Graph (, )][DBLP]


  382. Iterative pruning PCA improves resolution of highly structured populations. [Citation Graph (, )][DBLP]


  383. Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods. [Citation Graph (, )][DBLP]


  384. Regularized estimation of large-scale gene association networks using graphical Gaussian models. [Citation Graph (, )][DBLP]


  385. Automated vocabulary discovery for geo-parsing online epidemic intelligence. [Citation Graph (, )][DBLP]


  386. Identifying quantitative operation principles in metabolic pathways: a systematic method for searching feasible enzyme activity patterns leading to cellular adaptive responses. [Citation Graph (, )][DBLP]


  387. Modeling lymphocyte homing and encounters in lymph nodes. [Citation Graph (, )][DBLP]


  388. DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices. [Citation Graph (, )][DBLP]


  389. A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability. [Citation Graph (, )][DBLP]


  390. iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis. [Citation Graph (, )][DBLP]


  391. JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes. [Citation Graph (, )][DBLP]


  392. siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect. [Citation Graph (, )][DBLP]


  393. Phylogeny-guided interaction mapping in seven eukaryotes. [Citation Graph (, )][DBLP]


  394. Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior. [Citation Graph (, )][DBLP]


  395. Inferring protein function by domain context similarities in protein-protein interaction networks. [Citation Graph (, )][DBLP]


  396. Optimizing substitution matrix choice and gap parameters for sequence alignment. [Citation Graph (, )][DBLP]


  397. Bioclipse 2: A scriptable integration platform for the life sciences. [Citation Graph (, )][DBLP]


  398. Sorting by reversals and block-interchanges with various weight assignments. [Citation Graph (, )][DBLP]


  399. Considering scores between unrelated proteins in the search database improves profile comparison. [Citation Graph (, )][DBLP]


  400. Uncovering transcriptional interactions via an adaptive fuzzy logic approach. [Citation Graph (, )][DBLP]


  401. Granger causality vs. dynamic Bayesian network inference: a comparative study. [Citation Graph (, )][DBLP]


  402. A close examination of double filtering with fold change and t test in microarray analysis. [Citation Graph (, )][DBLP]


  403. Investigating heterogeneous protein annotations toward cross-corpora utilization. [Citation Graph (, )][DBLP]


  404. Identifying differentially methylated genes using mixed effect and generalized least square models. [Citation Graph (, )][DBLP]


  405. Exploring biological network structure with clustered random networks. [Citation Graph (, )][DBLP]


  406. Correction: Disease candidate gene identification and prioritization using protein interaction networks. [Citation Graph (, )][DBLP]


  407. Protein-protein docking using region-based 3D Zernike descriptors. [Citation Graph (, )][DBLP]


  408. Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy. [Citation Graph (, )][DBLP]


  409. An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation). [Citation Graph (, )][DBLP]


  410. Refining gene signatures: a Bayesian approach. [Citation Graph (, )][DBLP]


  411. An efficient algorithm for the stochastic simulation of the hybridization of DNA to microarrays. [Citation Graph (, )][DBLP]


  412. The impact of measurement errors in the identification of regulatory networks. [Citation Graph (, )][DBLP]


  413. Survival prediction from clinico-genomic models - a comparative study. [Citation Graph (, )][DBLP]


  414. Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences. [Citation Graph (, )][DBLP]


  415. Effects of normalization on quantitative traits in association test. [Citation Graph (, )][DBLP]


  416. DescFold: A web server for protein fold recognition. [Citation Graph (, )][DBLP]


  417. Graphle: Interactive exploration of large, dense graphs. [Citation Graph (, )][DBLP]


  418. TransportTP: A two-phase classification approach for membrane transporter prediction and characterization. [Citation Graph (, )][DBLP]


  419. Critical assessment of sequence-based protein-protein interaction prediction methods that do not require homologous protein sequences. [Citation Graph (, )][DBLP]


  420. Web-based interrogation of gene expression signatures using EXALT. [Citation Graph (, )][DBLP]


  421. BLAST+: architecture and applications. [Citation Graph (, )][DBLP]


  422. Quantitative comparison of microarray experiments with published leukemia related gene expression signatures. [Citation Graph (, )][DBLP]


  423. Comparison of phylogenetic trees through alignment of embedded evolutionary distances. [Citation Graph (, )][DBLP]


  424. CHESS (CgHExpreSS): A comprehensive analysis tool for the analysis of genomic alterations and their effects on the expression profile of the genome. [Citation Graph (, )][DBLP]


  425. Crossfit analysis: a novel method to characterize the dynamics of induced plant responses. [Citation Graph (, )][DBLP]


  426. Prediction of protein-protein interaction sites using an ensemble method. [Citation Graph (, )][DBLP]


  427. In silico method for systematic analysis of feature importance in microRNA-mRNA interactions. [Citation Graph (, )][DBLP]


  428. TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. [Citation Graph (, )][DBLP]


  429. A new permutation strategy of pathway-based approach for genome-wide association study. [Citation Graph (, )][DBLP]


  430. WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. [Citation Graph (, )][DBLP]


  431. Discovering collectively informative descriptors from high-throughput experiments. [Citation Graph (, )][DBLP]


  432. Algorithms for locating extremely conserved elements in multiple sequence alignments. [Citation Graph (, )][DBLP]


  433. Using mechanistic Bayesian networks to identify downstream targets of the Sonic Hedgehog pathway. [Citation Graph (, )][DBLP]


  434. Identification of ATP binding residues of a protein from its primary sequence. [Citation Graph (, )][DBLP]


  435. In Silico Evaluation of Predicted Regulatory Interactions in Arabidopsis thaliana. [Citation Graph (, )][DBLP]


  436. PreDisorder: ab initio sequence-based prediction of protein disordered regions. [Citation Graph (, )][DBLP]


  437. Prediction of backbone dihedral angles and protein secondary structure using support vector machines. [Citation Graph (, )][DBLP]


  438. A response to information criterion-based clustering with order-restricted candidate profiles in short time-course microarray experiments. [Citation Graph (, )][DBLP]


  439. svmPRAT: SVM-based Protein Residue Annotation Toolkit. [Citation Graph (, )][DBLP]


  440. ReseqChip: Automated integration of multiple local context probe data from the MitoChip array in mitochondrial DNA sequence assembly. [Citation Graph (, )][DBLP]


  441. The Medicago truncatula gene expression atlas web server. [Citation Graph (, )][DBLP]


  442. G+C content dominates intrinsic nucleosome occupancy. [Citation Graph (, )][DBLP]


  443. MultiTest V.1.2, a program to binomially combine independent tests and performance comparison with other related methods on proportional data. [Citation Graph (, )][DBLP]


  444. IRIS: a method for reverse engineering of regulatory relations in gene networks. [Citation Graph (, )][DBLP]


  445. LipocalinPred: a SVM-based method for prediction of lipocalins. [Citation Graph (, )][DBLP]


  446. Data mining of enzymes using specific peptides. [Citation Graph (, )][DBLP]


  447. Next generation transcriptomes for next generation genomes using est2assembly. [Citation Graph (, )][DBLP]


  448. Reconstructing nonlinear dynamic models of gene regulation using stochastic sampling. [Citation Graph (, )][DBLP]


  449. A white-box approach to microarray probe response characterization: the BaFL pipeline. [Citation Graph (, )][DBLP]


  450. A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks. [Citation Graph (, )][DBLP]


  451. Predicting functional upstream open reading frames in Saccharomyces cerevisiae. [Citation Graph (, )][DBLP]


  452. Skittle: A 2-Dimensional Genome Visualization Tool. [Citation Graph (, )][DBLP]


  453. Classification across gene expression microarray studies. [Citation Graph (, )][DBLP]


  454. AtPIN: Arabidopsis thaliana Protein Interaction Network. [Citation Graph (, )][DBLP]


  455. Integrative approaches to the prediction of protein functions based on the feature selection. [Citation Graph (, )][DBLP]

NOTICE1
System may not be available sometimes or not working properly, since it is still in development with continuous upgrades
NOTICE2
The rankings that are presented on this page should NOT be considered as formal since the citation info is incomplete in DBLP
 
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System created by asidirop@csd.auth.gr [http://users.auth.gr/~asidirop/] © 2002
for Data Engineering Laboratory, Department of Informatics, Aristotle University © 2002