Journals in DBLP

BMC Bioinformatics
2009, volume: 10, number: S-1

1. 
   Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences. [Citation Graph (, )][DBLP]
   
   
2. 
   Minimizing recombinations in consensus networks for phylogeographic studies. [Citation Graph (, )][DBLP]
   
   
3. 
   Genome aliquoting with double cut and join. [Citation Graph (, )][DBLP]
   
   
4. 
   Copy-number-variation and copy-number-alteration region detection by cumulative plots. [Citation Graph (, )][DBLP]
   
   
5. 
   Improved algorithms for approximate string matching (extended abstract). [Citation Graph (, )][DBLP]
   
   
6. 
   Sequence-structure relations of pseudoknot RNA. [Citation Graph (, )][DBLP]
   
   
7. 
   Human gene expression sensitivity according to large scale meta-analysis. [Citation Graph (, )][DBLP]
   
   
8. 
   ModuleDigger: an itemset mining framework for the detection of cis-regulatory modules. [Citation Graph (, )][DBLP]
   
   
9. 
   Mutual information estimation reveals global associations between stimuli and biological processes. [Citation Graph (, )][DBLP]
   
   
10. 
    Using random forest for reliable classification and cost-sensitive learning for medical diagnosis. [Citation Graph (, )][DBLP]
    
    
11. 
    A statistical framework for integrating two microarray data sets in differential expression analysis. [Citation Graph (, )][DBLP]
    
    
12. 
    SE: an algorithm for deriving sequence alignment from a pair of superimposed structures. [Citation Graph (, )][DBLP]
    
    
13. 
    Network-based support vector machine for classification of microarray samples. [Citation Graph (, )][DBLP]
    
    
14. 
    Identification of histone modifications in biomedical text for supporting epigenomic research. [Citation Graph (, )][DBLP]
    
    
15. 
    Comparison of Affymetrix data normalization methods using 6, 926 experiments across five array generations. [Citation Graph (, )][DBLP]
    
    
16. 
    A method to improve protein subcellular localization prediction by integrating various biological data sources. [Citation Graph (, )][DBLP]
    
    
17. 
    Detecting disease-associated genotype patterns. [Citation Graph (, )][DBLP]
    
    
18. 
    Maximum independent sets of commuting and noninterfering inversions. [Citation Graph (, )][DBLP]
    
    
19. 
    Prediction of RNA secondary structure with pseudoknots using integer programming. [Citation Graph (, )][DBLP]
    
    
20. 
    Genome-scale analysis to the impact of gene deletion on the metabolism of E. coli: constraint-based simulation approach. [Citation Graph (, )][DBLP]
    
    
21. 
    Comparative analysis of the JAK/STAT signaling through erythropoietin receptor and thrombopoietin receptor using a systems approach. [Citation Graph (, )][DBLP]
    
    
22. 
    Sorting by reversals, block interchanges, tandem duplications, and deletions. [Citation Graph (, )][DBLP]
    
    
23. 
    Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting. [Citation Graph (, )][DBLP]
    
    
24. 
    Finding optimal threshold for correction error reads in DNA assembling. [Citation Graph (, )][DBLP]
    
    
25. 
    Parallel short sequence assembly of transcriptomes. [Citation Graph (, )][DBLP]
    
    
26. 
    Short read DNA fragment anchoring algorithm. [Citation Graph (, )][DBLP]
    
    
27. 
    Searching for bidirectional promoters in Arabidopsis thaliana. [Citation Graph (, )][DBLP]
    
    
28. 
    REMAS: a new regression model to identify alternative splicing events from exon array data. [Citation Graph (, )][DBLP]
    
    
29. 
    A voting approach to identify a small number of highly predictive genes using multiple classifiers. [Citation Graph (, )][DBLP]
    
    
30. 
    Computational prediction of novel non-coding RNAs in Arabidopsis thaliana. [Citation Graph (, )][DBLP]
    
    
31. 
    ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets. [Citation Graph (, )][DBLP]
    
    
32. 
    Methods for comparative metagenomics. [Citation Graph (, )][DBLP]
    
    
33. 
    Extract interaction detection methods from the biological literature. [Citation Graph (, )][DBLP]
    
    
34. 
    Triplet supertree heuristics for the tree of life. [Citation Graph (, )][DBLP]
    
    
35. 
    Pathogenic Bacillus anthracis in the progressive gene losses and gains in adaptive evolution. [Citation Graph (, )][DBLP]
    
    
36. 
    DNA motif alignment by evolving a population of Markov chains. [Citation Graph (, )][DBLP]
    
    
37. 
    Principal component tests: applied to temporal gene expression data. [Citation Graph (, )][DBLP]
    
    
38. 
    HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models. [Citation Graph (, )][DBLP]
    
    
39. 
    A fast algorithm for genome-wide haplotype pattern mining. [Citation Graph (, )][DBLP]
    
    
40. 
    Advanced analysis and visualization of gene copy number and expression data. [Citation Graph (, )][DBLP]
    
    
41. 
    On optimal comparability editing with applications to molecular diagnostics. [Citation Graph (, )][DBLP]
    
    
42. 
    An unsupervised partition method based on association delineated revised mutual information. [Citation Graph (, )][DBLP]
    
    
43. 
    Knowledge driven decomposition of tumor expression profiles. [Citation Graph (, )][DBLP]
    
    
44. 
    A structural interpretation of the effect of GC-content on efficiency of RNA interference. [Citation Graph (, )][DBLP]
    
    
45. 
    A random forest approach to the detection of epistatic interactions in case-control studies. [Citation Graph (, )][DBLP]
    
    
46. 
    Semi-supervised gene shaving method for predicting low variation biological pathways from genome-wide data. [Citation Graph (, )][DBLP]
    
    
47. 
    Analysis on relationship between extreme pathways and correlated reaction sets. [Citation Graph (, )][DBLP]
    
    
48. 
    Predicting microRNA targets in time-series microarray experiments via functional data analysis. [Citation Graph (, )][DBLP]
    
    
49. 
    Comparison of automated candidate gene prediction systems using genes implicated in type 2 diabetes by genome-wide association studies. [Citation Graph (, )][DBLP]
    
    
50. 
    Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures. [Citation Graph (, )][DBLP]
    
    
51. 
    Analysis of mass spectrometry data using sub-spectra. [Citation Graph (, )][DBLP]
    
    
52. 
    Integrative disease classification based on cross-platform microarray data. [Citation Graph (, )][DBLP]
    
    
53. 
    Biclustering of gene expression data using reactive greedy randomized adaptive search procedure. [Citation Graph (, )][DBLP]
    
    
54. 
    Simultaneous phylogeny reconstruction and multiple sequence alignment. [Citation Graph (, )][DBLP]
    
    
55. 
    The Seventh Asia Pacific Bioinformatics Conference (APBC2009). [Citation Graph (, )][DBLP]
    
    
56. 
    Predicting disordered regions in proteins using the profiles of amino acid indices. [Citation Graph (, )][DBLP]
    
    
57. 
    Crystallizing short-read assemblies around seeds. [Citation Graph (, )][DBLP]
    
    
58. 
    GAIA: a gram-based interaction analysis tool - an approach for identifying interacting domains in yeast. [Citation Graph (, )][DBLP]
    
    
59. 
    Prediction of amyloid fibril-forming segments based on a support vector machine. [Citation Graph (, )][DBLP]
    
    
60. 
    A new classification method using array Comparative Genome Hybridization data, based on the concept of Limited Jumping Emerging Patterns. [Citation Graph (, )][DBLP]
    
    
61. 
    CGTS: a site-clustering graph based tagSNP selection algorithm in genotype data. [Citation Graph (, )][DBLP]
    
    
62. 
    Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the human genome. [Citation Graph (, )][DBLP]
    
    
63. 
    Quality assessment of tandem mass spectra using support vector machine (SVM). [Citation Graph (, )][DBLP]
    
    
64. 
    A new graph-based method for pairwise global network alignment. [Citation Graph (, )][DBLP]
    
    
65. 
    Identifying disease associations via genome-wide association studies. [Citation Graph (, )][DBLP]
    
    
66. 
    Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information. [Citation Graph (, )][DBLP]
    
    
67. 
    Fine-grained parallel RNAalifold algorithm for RNA secondary structure prediction on FPGA. [Citation Graph (, )][DBLP]
    
    
68. 
    A computational analysis of SARS cysteine proteinase-octapeptide substrate interaction: implication for structure and active site binding mechanism. [Citation Graph (, )][DBLP]
    
    
69. 
    Inversion-based genomic signatures. [Citation Graph (, )][DBLP]
    
    
70. 
    Studying the unfolding process of protein G and protein L under physical property space. [Citation Graph (, )][DBLP]
    
    
71. 
    Transcriptional interaction-assisted identification of dynamic nucleosome positioning. [Citation Graph (, )][DBLP]
    
    
72. 
    PCA-based population structure inference with generic clustering algorithms. [Citation Graph (, )][DBLP]
    
    
73. 
    Towards comprehensive structural motif mining for better fold annotation in the "twilight zone" of sequence dissimilarity. [Citation Graph (, )][DBLP]
    
    
74. 
    Co-evolution positions and rules for antigenic variants of human influenza A/H3N2 viruses. [Citation Graph (, )][DBLP]
    
    
75. 
    Semi-supervised protein subcellular localization. [Citation Graph (, )][DBLP]