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Jacques van Helden: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Yves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak
    An Overview of Data Models for the Analysis of Biochemical Pathways. [Citation Graph (0, 0)][DBLP]
    CMSB, 2003, pp:174- [Conf]
  2. Jacques van Helden, David Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew Eldridge, Kirill Degtyarenko, Shoshana J. Wodak
    Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:227-229 [Conf]
  3. Jacques van Helden, David Gilbert, Lorenz Wernisch, Michael Schroeder, Shoshana J. Wodak
    Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data. [Citation Graph (0, 0)][DBLP]
    JOBIM, 2000, pp:147-164 [Conf]
  4. Yves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak
    An overview of data models for the analysis of biochemical pathways. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2003, v:4, n:3, pp:246-259 [Journal]
  5. Jacques van Helden, Avi Naim, Christian Lemer, Renato Mancuso, Matthew Eldridge, Shoshana J. Wodak
    From Molecular Activities and Processes to Biological Function. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2001, v:2, n:1, pp:81-107 [Journal]
  6. Didier Gonze, Sylvie Pinloche, Olivier Gascuel, Jacques van Helden
    Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:17, pp:3490-3500 [Journal]
  7. Jacques van Helden
    Metrics for comparing regulatory sequences on the basis of pattern counts. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:3, pp:399-406 [Journal]
  8. N. Simonis, Shoshana J. Wodak, G. N. Cohen, Jacques van Helden
    Combining pattern discovery and discriminant analysis to predict gene co-regulation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:15, pp:2370-2379 [Journal]
  9. Michael Schroeder, David Gilbert, Jacques van Helden, Penny Noy
    Approaches to visualisation in bioinformatics: from dendrograms to Space Explorer. [Citation Graph (0, 0)][DBLP]
    Inf. Sci., 2001, v:139, n:1-2, pp:19-57 [Journal]
  10. Jacques van Helden
    Regulatory Sequence Analysis Tools. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3593-3596 [Journal]
  11. Heladia Salgado, Alberto Santos-Zavaleta, Ulises Garza-Ramos, Jacques van Helden, Edgar Díaz, Julio Collado-Vides
    RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:59-60 [Journal]
  12. Ulrich Güldener, Martin Münsterkötter, Gabi Kastenmüller, Norman Strack, Jacques van Helden, Christian Lemer, J. Richelles, Shoshana J. Wodak, J. García-Martínez, J. E. Pérez-Ortín, Holger Michael, Andreas Kaps, E. Talla, Bernard Dujon, B. André, J. L. Souciet, J. De Montigny, E. Bon, C. Gaillardin, Hans-Werner Mewes
    CYGD: the Comprehensive Yeast Genome Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:364-368 [Journal]
  13. Didier Croes, Fabian Couche, Shoshana J. Wodak, Jacques van Helden
    Metabolic PathFinding: inferring relevant pathways in biochemical networks. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:326-330 [Journal]

  14. Gaussian Graphical Models to Infer Putative Genes Involved in Nitrogen Catabolite Repression in S. cerevisiae. [Citation Graph (, )][DBLP]


  15. Prophinder: a computational tool for prophage prediction in prokaryotic genomes. [Citation Graph (, )][DBLP]


  16. Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl. [Citation Graph (, )][DBLP]


  17. info-gibbs: a motif discovery algorithm that directly optimizes information content during sampling. [Citation Graph (, )][DBLP]


  18. In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. [Citation Graph (, )][DBLP]


  19. Pathway discovery in metabolic networks by subgraph extraction. [Citation Graph (, )][DBLP]


  20. In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells. [Citation Graph (, )][DBLP]


  21. Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution. [Citation Graph (, )][DBLP]


  22. Evaluation of clustering algorithms for protein-protein interaction networks. [Citation Graph (, )][DBLP]


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