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Russ B. Altman: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Neil F. Abernethy, Russ B. Altman
    Sophia: Providing Basic Knowledge Services with a Common DBMS. [Citation Graph (1, 0)][DBLP]
    KRDB, 1998, pp:1-1 [Conf]
  2. Russ B. Altman, Bruce G. Buchanan
    Partial Compilation of Strategic Knowledge. [Citation Graph (0, 0)][DBLP]
    AAAI, 1987, pp:399-404 [Conf]
  3. Barbara Hayes-Roth, Bruce G. Buchanan, Olivier Lichtarge, Mike Hewitt, Russ B. Altman, James F. Brinkley, Craig Cornelius, Bruce Dunan, Oleg Jardetzky
    PROTEAN: Deriving Protein Structure from Constraints. [Citation Graph (0, 0)][DBLP]
    AAAI, 1986, pp:904-909 [Conf]
  4. Russ B. Altman
    Challenges in Creating an Infrastructure for Physics-Based Simulation of Biological Structures. [Citation Graph (0, 0)][DBLP]
    CSB, 2005, pp:3- [Conf]
  5. Mike P. Liang, Douglas L. Brutlag, Russ B. Altman
    Automatic Construction of 3D Structural Motifs for Protein Function Prediction. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:613-614 [Conf]
  6. Shuo Liu, Steve Lin, Mark Woon, Teri E. Klein, Russ B. Altman
    A Personalized and Automated dbSNP Surveillance System. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:132-136 [Conf]
  7. Tu Minh Phuong, Zhen Lin, Russ B. Altman
    Choosing SNPs Using Feature Selection. [Citation Graph (0, 0)][DBLP]
    CSB, 2005, pp:301-309 [Conf]
  8. Scott L. Delp, F. Clayton Anderson, Russ B. Altman
    Physics-based simulation of biological structures. [Citation Graph (0, 0)][DBLP]
    ISBI, 2006, pp:802-805 [Conf]
  9. Russ B. Altman
    Probabilistic Structure Calculations: A Three-Dimensional tRNA Structure from Sequence Correlation Data. [Citation Graph (0, 0)][DBLP]
    ISMB, 1993, pp:12-20 [Conf]
  10. Russ B. Altman, Neil F. Abernethy, Richard O. Chen
    Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:15-24 [Conf]
  11. Russ B. Altman, Mark Gerstein
    Finding an Average Core Structure: Application to the Globins. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:19-27 [Conf]
  12. Russ B. Altman, Bryn Weiser, Harry F. Noller
    Constraint Satisfaction Techniques for Modeling Large Complexes: Application to the Central Domain of 16S Ribosomal RNA. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:10-18 [Conf]
  13. Steven C. Bagley, Liping Wei, Carol Cheng, Russ B. Altman
    Characterizing Oriented Protein Structural Sites Using Biochemical Properties. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:12-20 [Conf]
  14. Richard O. Chen, Ramon M. Felciano, Russ B. Altman
    RIBOWEB: Linking Structural Computations to a Knowledge Base of Published Experimental Data. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:84-87 [Conf]
  15. Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu, Peter M. Small, Russ B. Altman
    Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:286-295 [Conf]
  16. Daniel L. Rubin, Farhad Shafa, Diane E. Oliver, Micheal Hewett, Russ B. Altman
    Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:207-215 [Conf]
  17. Jeanette P. Schmidt, Cheng Che Chen, Jonathan L. Cooper, Russ B. Altman
    A Surface Measure for Probabilistic Structural Computations. [Citation Graph (0, 0)][DBLP]
    ISMB, 1998, pp:148-156 [Conf]
  18. Russ B. Altman
    Challenges for knowledge discovery in biology. [Citation Graph (0, 0)][DBLP]
    KDD, 2001, pp:2- [Conf]
  19. Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman
    Biomolecular Structure Estimation: A Case Study of Irregular Hierarchical Parallelism. [Citation Graph (0, 0)][DBLP]
    PPSC, 1999, pp:- [Conf]
  20. Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
    Preface. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:- [Conf]
  21. Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
    Preface. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:- [Conf]
  22. Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
    Special Paper - Introduction. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:636-637 [Conf]
  23. Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
    Preface. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2004, pp:- [Conf]
  24. Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
    Preface. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2005, pp:- [Conf]
  25. D. Rey Banatao, Conrad C. Huang, Patricia C. Babbitt, Russ B. Altman, Teri E. Klein
    ViewFeature: Integrated Feature Analysis and Visualization. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:240-250 [Conf]
  26. Jeffrey T. Chang, Soumya Raychaudhuri, Russ B. Altman
    Including Biological Literature Improves Homology Search. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:374-383 [Conf]
  27. Diane E. Oliver, Daniel L. Rubin, Joshua M. Stuart, Micheal Hewett, Teri E. Klein, Russ B. Altman
    Ontology Development for a Pharmacogenetics Knowledge Base. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:65-76 [Conf]
  28. Mike P. Liang, Douglas L. Brutlag, Russ B. Altman
    Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:204-215 [Conf]
  29. Daniel L. Rubin, Micheal Hewett, Diane E. Oliver, Teri E. Klein, Russ B. Altman
    Automating Data Acquisition into Ontologies from Pharmacogenetics Relational Data Sources Using Declarative Object Definitions and XML. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:88-99 [Conf]
  30. Allison Waugh, Glenn A. Williams, Liping Wei, Russ B. Altman
    Using Metacomputing Tools to Facilitate Large Scale Analyses of Biological Databases. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:360-371 [Conf]
  31. Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman
    The hierarchical organization of molecular structure computations. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:51-59 [Conf]
  32. Cheng Che Chen, Jaswinder Pal Singh, William B. Poland, Russ B. Altman
    Parallel protein structure determination from uncertain data. [Citation Graph (0, 0)][DBLP]
    SC, 1994, pp:570-579 [Conf]
  33. John H. Gennari, Russ B. Altman, Mark A. Musen
    Reuse with PROTÉgÉ-II: From Elevators to Ribosomes. [Citation Graph (0, 0)][DBLP]
    SSR, 1995, pp:72-80 [Conf]
  34. Miles Osborne, Mark Cuminskey, Gail Sinclair, Matthew Smillie, Bonnie L. Webber, Jeffrey T. Chang, Nipun Mehra, Veronica Rotemberg, Russ B. Altman
    Edinburgh-Stanford TREC-2003 Genomics Track. [Citation Graph (0, 0)][DBLP]
    TREC, 2003, pp:622-630 [Conf]
  35. Russ B. Altman
    A Probabilistic Algorithm for Calculating Structure: Borrowing from Simulated Annealing. [Citation Graph (0, 0)][DBLP]
    UAI, 1993, pp:23-31 [Conf]
  36. Russ B. Altman, Cheng Che Chen, William B. Poland, Jaswinder Pal Singh
    Probabilistic Constraint Satisfaction with Non-Gaussian Noise. [Citation Graph (0, 0)][DBLP]
    UAI, 1994, pp:15-22 [Conf]
  37. Russ B. Altman
    AI in Medicine: The Spectrum of Challenges from Managed Care to Molecular Medicine. [Citation Graph (0, 0)][DBLP]
    AI Magazine, 1999, v:20, n:3, pp:67-77 [Journal]
  38. Russ B. Altman
    Editorial: Building successful biological databases. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2004, v:5, n:1, pp:4- [Journal]
  39. Russ B. Altman
    Editorial: Annual progress in bioinformatics. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2005, v:6, n:1, pp:4-5 [Journal]
  40. Russ B. Altman
    Annual Progress in Bioinformatics 2006. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2006, v:7, n:3, pp:209-210 [Journal]
  41. Russ B. Altman
    A curriculum for bioinformatics: the time is ripe. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:7, pp:549-550 [Journal]
  42. Jeffrey T. Chang, Hinrich Schütze, Russ B. Altman
    GAPSCORE: finding gene and protein names one word at a time. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:2, pp:216-225 [Journal]
  43. Cheng Che Chen, Richard O. Chen, Russ B. Altman
    Constraining volume by matching the moments of a distance distribution. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:4, pp:319-326 [Journal]
  44. Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman
    Using imperfect secondary structure predictions to improve molecular structure computations. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:1, pp:53-65 [Journal]
  45. Mark Gerstein, Russ B. Altman
    Using a measure of structural variation to define a core for the globins. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1995, v:11, n:6, pp:633-644 [Journal]
  46. Sean D. Mooney, Russ B. Altman
    MutDB: annotating human variation with functionally relevant data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:14, pp:1858-1860 [Journal]
  47. Mor Peleg, Iwei Yeh, Russ B. Altman
    Modelling biological processes using workflow and Petri Net models. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:6, pp:825-837 [Journal]
  48. Soumya Raychaudhuri, Russ B. Altman
    A literature-based method for assessing the functional coherence of a gene group. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:3, pp:396-401 [Journal]
  49. Olga G. Troyanskaya, Michael Cantor, Gavin Sherlock, Patrick O. Brown, Trevor Hastie, Robert Tibshirani, David Botstein, Russ B. Altman
    Missing value estimation methods for DNA microarrays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:6, pp:520-525 [Journal]
  50. Olga G. Troyanskaya, Mitchell E. Garber, Patrick O. Brown, David Botstein, Russ B. Altman
    Nonparametric methods for identifying differentially expressed genes in microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:11, pp:1454-1461 [Journal]
  51. Iwei Yeh, Peter D. Karp, Natalya Fridman Noy, Russ B. Altman
    Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:2, pp:241-248 [Journal]
  52. Diane E. Oliver, Gaurav Bhalotia, Ariel S. Schwartz, Russ B. Altman, Marti A. Hearst
    Tools for loading MEDLINE into a local relational database. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:146- [Journal]
  53. Jiawei Han, Russ B. Altman, Vipin Kumar, Heikki Mannila, Daryl Pregibon
    Emerging scientific applications in data mining. [Citation Graph (0, 0)][DBLP]
    Commun. ACM, 2002, v:45, n:8, pp:54-58 [Journal]
  54. Russ B. Altman, Michael Bada, Xiaoqian J. Chai, Michelle Whirl Carillo, Richard O. Chen, Neil F. Abernethy
    RiboWeb: An Ontology-Based System for Collaborative Molecular Biology. [Citation Graph (0, 0)][DBLP]
    IEEE Intelligent Systems, 1999, v:14, n:5, pp:68-76 [Journal]
  55. Russ B. Altman, Alfonso Valencia, Satoru Miyano, Shoba Ranganathan
    Challenges for Intelligent Systems in Biology. [Citation Graph (0, 0)][DBLP]
    IEEE Intelligent Systems, 2001, v:16, n:6, pp:14-20 [Journal]
  56. Russ B. Altman
    A probabilistic approach to determining biological structure: integrating uncertain data sources. [Citation Graph (0, 0)][DBLP]
    Int. J. Hum.-Comput. Stud., 1995, v:42, n:6, pp:593-616 [Journal]
  57. John H. Gennari, Heyning Cheng, Russ B. Altman, Mark A. Musen
    Reuse, CORBA, and knowledge-based systems. [Citation Graph (0, 0)][DBLP]
    Int. J. Hum.-Comput. Stud., 1998, v:49, n:4, pp:523-546 [Journal]
  58. Liping Wei, Russ B. Altman
    Recognizing Complex, Asymmetric Functional Sites in Protein Structures Using a Bayesian Scoring Function. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2003, v:1, n:1, pp:119-138 [Journal]
  59. Tu Minh Phuong, Zhen Lin, Russ B. Altman
    Choosing Snps Using Feature Selection. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2006, v:4, n:2, pp:241-258 [Journal]
  60. Russ B. Altman, Teri E. Klein
    Biomedical informatics training at Stanford in the 21st century. [Citation Graph (0, 0)][DBLP]
    Journal of Biomedical Informatics, 2007, v:40, n:1, pp:55-58 [Journal]
  61. Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman
    Hierarchical Organization of Molecular Structure Computations. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:3, pp:409-422 [Journal]
  62. Glenn A. Williams, Jonathan M. Dugan, Russ B. Altman
    Constrained Global Optimization for Estimating Molecular Structure from Atomic Distances. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2001, v:8, n:5, pp:523-548 [Journal]
  63. James F. Brinkley, Russ B. Altman, Bruce S. Duncan, Bruce G. Buchanan, Oleg Jardetzky
    Heuristic refinement method for the derivation of protein solution structures: validation on cytochrome b562. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Computer Sciences, 1988, v:28, n:4, pp:194-210 [Journal]
  64. Soumya Raychaudhuri, Hinrich Schütze, Russ B. Altman
    Inclusion of Textual Documentation in the Analysis of Multidimensional Data Sets: Application to Gene Expression Data. [Citation Graph (0, 0)][DBLP]
    Machine Learning, 2003, v:52, n:1-2, pp:119-145 [Journal]
  65. Micheal Hewett, Diane E. Oliver, Daniel L. Rubin, Katrina L. Easton, Joshua M. Stuart, Russ B. Altman, Teri E. Klein
    PharmGKB: the Pharmacogenetics Knowledge Base. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:163-165 [Journal]
  66. Mike P. Liang, D. Rey Banatao, Teri E. Klein, Douglas L. Brutlag, Russ B. Altman
    WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3324-3327 [Journal]
  67. Jonathan D. Wren, Jeffrey T. Chang, James Pustejovsky, Eytan Adar, Harold R. Garner, Russ B. Altman
    Biomedical term mapping databases. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:289-293 [Journal]
  68. Russ B. Altman
    Complexities of Managing Biomedical Information. [Citation Graph (0, 0)][DBLP]
    OMICS, 2003, v:7, n:1, pp:127-130 [Journal]

  69. Text mining for pharmacogenomics. [Citation Graph (, )][DBLP]


  70. Combining Molecular Dynamics and Machine Learning to Improve Protein Function Recognition. [Citation Graph (, )][DBLP]


  71. Combining Simulation and Machine Learning to Recognize Function in 4D. [Citation Graph (, )][DBLP]


  72. Extracting Subject Demographic Information From Abstracts of Randomized Clinical Trial Reports. [Citation Graph (, )][DBLP]


  73. Current progress in bioinformatics 2007. [Citation Graph (, )][DBLP]


  74. Editorial: Current progress in Bioinformatics 2010. [Citation Graph (, )][DBLP]


  75. Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models. [Citation Graph (, )][DBLP]


  76. M-BISON: Microarray-based integration of data sources using networks. [Citation Graph (, )][DBLP]


  77. MScanner: a classifier for retrieving Medline citations. [Citation Graph (, )][DBLP]


  78. Clustering protein environments for function prediction: finding PROSITE motifs in 3D. [Citation Graph (, )][DBLP]


  79. Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text. [Citation Graph (, )][DBLP]


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