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Knut Reinert: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Markus Bauer, Gunnar W. Klau, Knut Reinert
    Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization. [Citation Graph (0, 0)][DBLP]
    CompLife, 2005, pp:217-228 [Conf]
  2. Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein
    Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples. [Citation Graph (0, 0)][DBLP]
    CompLife, 2005, pp:151-162 [Conf]
  3. Nathanaël Delmotte, Bettina M. Mayr, Andreas Leinenbach, Knut Reinert, Oliver Kohlbacher, Christoph L. Klein, Christian G. Huber
    Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins. [Citation Graph (0, 0)][DBLP]
    Computational Proteomics, 2005, pp:- [Conf]
  4. Christian G. Huber, Oliver Kohlbacher, Knut Reinert
    05471 Executive Summary - Computational Proteomics. [Citation Graph (0, 0)][DBLP]
    Computational Proteomics, 2005, pp:- [Conf]
  5. Christian G. Huber, Oliver Kohlbacher, Knut Reinert
    05471 Abstract Collection - Computational Proteomics. [Citation Graph (0, 0)][DBLP]
    Computational Proteomics, 2005, pp:- [Conf]
  6. Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert
    Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:4-16 [Conf]
  7. Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern
    An exact solution for the Segment-to-Segment multiple sequence alignment problem. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  8. Knut Reinert, Jens Stoye, Torsten Will
    Combining Divide-and-Conquer, the A*-Algorithm, and Successive Realignment Approaches to Speed Multiple Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:17-24 [Conf]
  9. Phillip G. Bradford, Knut Reinert
    Lower Bounds for Row Minima Searching (Extended Abstract). [Citation Graph (0, 0)][DBLP]
    ICALP, 1996, pp:454-465 [Conf]
  10. Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers
    Design of a compartmentalized shotgun assembler for the human genome. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:132-139 [Conf]
  11. Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
    Optimal robust non-unique probe selection using Integer Linear Programming. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:186-193 [Conf]
  12. Eva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt
    High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2006, pp:243-254 [Conf]
  13. Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail
    Visualization challenges for a new cyberpharmaceutical computing paradigm. [Citation Graph (0, 0)][DBLP]
    IEEE Symposium on Parallel and Large-Data Visualization and Graphics, 2001, pp:7-18 [Conf]
  14. Daniel H. Huson, Knut Reinert, Eugene W. Myers
    The greedy path-merging algorithm for sequence assembly. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2001, pp:157-163 [Conf]
  15. Hans-Peter Lenhof, Knut Reinert, Martin Vingron
    A polyhedral approach to RNA sequence structure alignment. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:153-162 [Conf]
  16. Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kurt Mehlhorn, John D. Kececioglu
    A branch-and-cut algorithm for multiple sequence alignment. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:241-250 [Conf]
  17. Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert
    A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2007, pp:473-487 [Conf]
  18. Markus Bauer, Gunnar W. Klau, Knut Reinert
    Multiple Structural RNA Alignment with Lagrangian Relaxation. [Citation Graph (0, 0)][DBLP]
    WABI, 2005, pp:303-314 [Conf]
  19. Aaron L. Halpern, Daniel H. Huson, Knut Reinert
    Segment Match Refinement and Applications. [Citation Graph (0, 0)][DBLP]
    WABI, 2002, pp:126-139 [Conf]
  20. Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton
    Comparing Assemblies Using Fragments and Mate-Pairs. [Citation Graph (0, 0)][DBLP]
    WABI, 2001, pp:294-306 [Conf]
  21. Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert
    An exact solution for the segment-to-segment multiple sequence alignment problem. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:3, pp:203-210 [Journal]
  22. Knut Reinert, Jens Stoye, Torsten Will
    An iterative method for faster sum-of-pairs multiple sequence alignment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:9, pp:808-814 [Journal]
  23. Oliver Kohlbacher, Knut Reinert, Clemens Gröpl, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Marc Sturm
    TOPP - the OpenMS proteomics pipeline. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:191-197 [Journal]
  24. Witold E. Wolski, Maciej Lalowski, Peter Jungblut, Knut Reinert
    Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:203- [Journal]
  25. Witold E. Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert
    Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:285- [Journal]
  26. John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron
    A polyhedral approach to sequence alignment problems. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2000, v:104, n:1-3, pp:143-186 [Journal]
  27. Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
    Integer linear programming approaches for non-unique probe selection. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2007, v:155, n:6-7, pp:840-856 [Journal]
  28. Oliver Kohlbacher, Knut Reinert
    Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische Herausforderungen (Differential Analysis in Proteomics: Experimental Methods, Algorithmic Challenges). [Citation Graph (0, 0)][DBLP]
    it - Information Technology, 2004, v:46, n:1, pp:31-38 [Journal]
  29. Daniel H. Huson, Knut Reinert, Eugene W. Myers
    The greedy path-merging algorithm for contig scaffolding. [Citation Graph (0, 0)][DBLP]
    J. ACM, 2002, v:49, n:5, pp:603-615 [Journal]
  30. Hans-Peter Lenhof, Knut Reinert, Martin Vingron
    A Polyhedral Approach to RNA Sequence Structure Alignment. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:3, pp:517-530 [Journal]
  31. Martin Lermen, Knut Reinert
    The Practical Use of the A* Algorithm for Exact Multiple Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:5, pp:655-671 [Journal]
  32. Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert
    A branch-and-cut algorithm for multiple sequence alignment. [Citation Graph (0, 0)][DBLP]
    Math. Program., 2006, v:105, n:2-3, pp:387-425 [Journal]

  33. Integer Linear Programming in Computational Biology. [Citation Graph (, )][DBLP]


  34. Segment-based multiple sequence alignment. [Citation Graph (, )][DBLP]


  35. A General Paradigm for Fast, Adaptive Clustering of Biological Sequences. [Citation Graph (, )][DBLP]


  36. A geometric approach for the alignment of liquid chromatography - mass spectrometry data. [Citation Graph (, )][DBLP]


  37. Fast and Adaptive Variable Order Markov Chain Construction. [Citation Graph (, )][DBLP]


  38. A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads. [Citation Graph (, )][DBLP]


  39. MicroRazerS: rapid alignment of small RNA reads. [Citation Graph (, )][DBLP]


  40. Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization. [Citation Graph (, )][DBLP]


  41. LC-MSsim - a simulation software for liquid chromatography mass spectrometry data. [Citation Graph (, )][DBLP]


  42. OpenMS - An open-source software framework for mass spectrometry. [Citation Graph (, )][DBLP]


  43. SeqAn An efficient, generic C++ library for sequence analysis. [Citation Graph (, )][DBLP]


  44. Robust consensus computation. [Citation Graph (, )][DBLP]


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