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Publications of Author

1. Gerth Stølting Brodal, Rune B. Lyngsø, Christian N. S. Pedersen, Jens Stoye
   Finding Maximal Pairs with Bounded Gap. [Citation Graph (0, 0)][DBLP]
   CPM, 1999, pp:134-149 [Conf]
   
2. Christian N. S. Pedersen, Rune B. Lyngsø, Jotun Hein
   Comparison of Coding DNA. [Citation Graph (0, 0)][DBLP]
   CPM, 1998, pp:153-173 [Conf]
   
3. Gerth Stølting Brodal, Rune B. Lyngsø, Anna Östlin, Christian N. S. Pedersen
   Solving the String Statistics Problem in Time O(n log n). [Citation Graph (0, 0)][DBLP]
   ICALP, 2002, pp:728-739 [Conf]
   
4. Rune B. Lyngsø
   Complexity of Pseudoknot Prediction in Simple Models. [Citation Graph (0, 0)][DBLP]
   ICALP, 2004, pp:919-931 [Conf]
   
5. Rune B. Lyngsø, Christian N. S. Pedersen
   Complexity of Comparing Hidden Markov Models. [Citation Graph (0, 0)][DBLP]
   ISAAC, 2001, pp:416-428 [Conf]
   
6. Rune B. Lyngsø, Christian N. S. Pedersen, Henrik Nielsen
   Metrics and Similarity Measures for Hidden Markov Models. [Citation Graph (0, 0)][DBLP]
   ISMB, 1999, pp:178-186 [Conf]
   
7. Rune B. Lyngsø, Christian N. S. Pedersen
   Pseudoknots in RNA secondary structures. [Citation Graph (0, 0)][DBLP]
   RECOMB, 2000, pp:201-209 [Conf]
   
8. Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen
   Internal loops in RNA secondary structure prediction. [Citation Graph (0, 0)][DBLP]
   RECOMB, 1999, pp:260-267 [Conf]
   
9. Arun K. Jagota, Rune B. Lyngsø, Christian N. S. Pedersen
   Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar. [Citation Graph (0, 0)][DBLP]
   WABI, 2001, pp:69-94 [Conf]
   
10. Paul Jenkins, Rune B. Lyngsø, Jotun Hein
    How Many Transcripts Does It Take to Reconstruct the Splice Graph? [Citation Graph (0, 0)][DBLP]
    WABI, 2006, pp:103-114 [Conf]
    
11. Rune B. Lyngsø, Yun S. Song, Jotun Hein
    Minimum Recombination Histories by Branch and Bound. [Citation Graph (0, 0)][DBLP]
    WABI, 2005, pp:239-250 [Conf]
    
12. Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin
    Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1815-1824 [Journal]
    
13. Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen
    Fast evaluation of internal loops in RNA secondary structure prediction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:6, pp:440-445 [Journal]
    
14. Rune B. Lyngsø, Christian N. S. Pedersen
    RNA Pseudoknot Prediction in Energy-Based Models. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:3-4, pp:409-427 [Journal]
    
15. Rune B. Lyngsø, Christian N. S. Pedersen
    The consensus string problem and the complexity of comparing hidden Markov models. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2002, v:65, n:3, pp:545-569 [Journal]
    
16. Jakob Hull Havgaard, Rune B. Lyngsø, Jan Gorodkin
    The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:650-653 [Journal]
    
17. Yun S. Song, Rune B. Lyngsø, Jotun Hein
    Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:3, pp:239-251 [Journal]
    
18. 
    Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony. [Citation Graph (, )][DBLP]
    
    
19. 
    StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees. [Citation Graph (, )][DBLP]
    
    
20. 
    Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity. [Citation Graph (, )][DBLP]