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Roded Sharan: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan
    On the Complexity of Positional Sequencing by Hybridization. [Citation Graph (0, 0)][DBLP]
    CPM, 1999, pp:88-100 [Conf]
  2. Itsik Pe'er, Ron Shamir, Roded Sharan
    Incomplete Directed Perfect Phylogeny. [Citation Graph (0, 0)][DBLP]
    CPM, 2000, pp:143-153 [Conf]
  3. Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail
    Islands of Tractability for Parsimony Haplotyping. [Citation Graph (0, 0)][DBLP]
    CSB, 2005, pp:65-72 [Conf]
  4. Anya Tsalenko, Roded Sharan, Hege Edvardsen, Vessela Kristensen, Anne-Lise Børresen-Dale, Amir Ben-Dor, Zohar Yakhini
    Analysis of SNP-Expression Association Matrices. [Citation Graph (0, 0)][DBLP]
    CSB, 2005, pp:135-143 [Conf]
  5. Pavol Hell, Ron Shamir, Roded Sharan
    A Fully Dynamic Algorithm for Recognizing and Representing Proper Interval Graphs. [Citation Graph (0, 0)][DBLP]
    ESA, 1999, pp:527-539 [Conf]
  6. Eric P. Xing, Roded Sharan, Michael I. Jordan
    Bayesian haplo-type inference via the dirichlet process. [Citation Graph (0, 0)][DBLP]
    ICML, 2004, pp:- [Conf]
  7. Roded Sharan, Ron Shamir
    Center CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:307-316 [Conf]
  8. Roded Sharan, Ivan Ovcharenko, Asa Ben-Hur, Richard M. Karp
    CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2003, pp:283-291 [Conf]
  9. Amos Tanay, Roded Sharan, Ron Shamir
    Discovering statistically significant biclusters in gene expression data. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:136-144 [Conf]
  10. Roded Sharan, Eugene W. Myers
    A motif-based framework for recognizing sequence families. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:387-393 [Conf]
  11. Shaojie Zhang, Ilya Borovok, Yair Aharonowitz, Roded Sharan, Vineet Bafna
    A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:557-565 [Conf]
  12. Roded Sharan, Avi Wigderson
    A New NCAlgorithm for Perfect Matching in Bipartite Cubic Graphs. [Citation Graph (0, 0)][DBLP]
    ISTCS, 1996, pp:202-207 [Conf]
  13. Irit Gat-Viks, Ron Shamir, Richard M. Karp, Roded Sharan
    Reconstructing Chain Functions in Genetic Networks. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2004, pp:498-509 [Conf]
  14. Roded Sharan, Amir Ben-Dor, Zohar Yakhini
    Multiplexing Schemes for Generic SNP Genotyping Assays. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2004, pp:140-151 [Conf]
  15. Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini
    Towards optimally multiplexed applications of universal DNA tag systems. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:48-56 [Conf]
  16. Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan
    Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2005, pp:1-13 [Conf]
  17. Eran Segal, Roded Sharan
    A discriminative model for identifying spatial cis-regulatory modules. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:141-149 [Conf]
  18. Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp
    Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:282-289 [Conf]
  19. Banu Dost, Tomer Shlomi, Nitin Gupta 0002, Eytan Ruppin, Vineet Bafna, Roded Sharan
    QNet: A Tool for Querying Protein Interaction Networks. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2007, pp:1-15 [Conf]
  20. Assaf Natanzon, Ron Shamir, Roded Sharan
    A Polynomial Approximation Algorithm for the Minimum Fill-In Problem. [Citation Graph (0, 0)][DBLP]
    STOC, 1998, pp:41-47 [Conf]
  21. Itsik Pe'er, Ron Shamir, Roded Sharan
    On the Generality of Phylogenies from Incomplete Directed Characters. [Citation Graph (0, 0)][DBLP]
    SWAT, 2002, pp:358-367 [Conf]
  22. Jens Gramm, Tzvika Hartman, Till Nierhoff, Roded Sharan, Till Tantau
    On the Complexity of SNP Block Partitioning Under the Perfect Phylogeny Model. [Citation Graph (0, 0)][DBLP]
    WABI, 2006, pp:92-102 [Conf]
  23. Tzvika Hartman, Roded Sharan
    A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals. [Citation Graph (0, 0)][DBLP]
    WABI, 2004, pp:50-61 [Conf]
  24. Gad Kimmel, Roded Sharan, Ron Shamir
    Identifying Blocks and Sub-populations in Noisy SNP Data. [Citation Graph (0, 0)][DBLP]
    WABI, 2003, pp:303-319 [Conf]
  25. Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter
    Flux-Based vs. Topology-Based Similarity of Metabolic Genes. [Citation Graph (0, 0)][DBLP]
    WABI, 2006, pp:274-285 [Conf]
  26. Tal Pupko, Roded Sharan, Masami Hasegawa, Ron Shamir, Dan Graur
    A Chemical-Distance-Based Test for Positive Darwinian Selection. [Citation Graph (0, 0)][DBLP]
    WABI, 2001, pp:142-155 [Conf]
  27. Assaf Natanzon, Ron Shamir, Roded Sharan
    Complexity Classification of Some Edge Modification Problems. [Citation Graph (0, 0)][DBLP]
    WG, 1999, pp:65-77 [Conf]
  28. Ron Shamir, Roded Sharan, Dekel Tsur
    Cluster Graph Modification Problems. [Citation Graph (0, 0)][DBLP]
    WG, 2002, pp:379-390 [Conf]
  29. Irit Gat-Viks, Roded Sharan, Ron Shamir
    Scoring clustering solutions by their biological relevance. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:18, pp:2381-2389 [Journal]
  30. Roded Sharan, Adi Maron-Katz, Ron Shamir
    CLICK and EXPANDER: a system for clustering and visualizing gene expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:14, pp:1787-1799 [Journal]
  31. Nir Yosef, Zohar Yakhini, Anya Tsalenko, Vessela Kristensen, Anne-Lise Børresen-Dale, Eytan Ruppin, Roded Sharan
    A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:91-98 [Journal]
  32. Eitan Hirsh, Roded Sharan
    Identification of conserved protein complexes based on a model of protein network evolution. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:170-176 [Journal]
  33. Ron Shamir, Adi Maron-Katz, Amos Tanay, Chaim Linhart, Israel Steinfeld, Roded Sharan, Yosef Shiloh, Ran Elkon
    EXPANDER - an integrative program suite for microarray data analysis. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:232- [Journal]
  34. Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sharan
    QPath: a method for querying pathways in a protein-protein interaction network. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:199- [Journal]
  35. Assaf Natanzon, Ron Shamir, Roded Sharan
    Complexity classification of some edge modification problems. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2001, v:113, n:1, pp:109-128 [Journal]
  36. Ron Shamir, Roded Sharan
    A fully dynamic algorithm for modular decomposition and recognition of cographs. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2004, v:136, n:2-3, pp:329-340 [Journal]
  37. Ron Shamir, Roded Sharan, Dekel Tsur
    Cluster graph modification problems. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2004, v:144, n:1-2, pp:173-182 [Journal]
  38. Jens Gramm, Till Nierhoff, Roded Sharan, Till Tantau
    Haplotyping with missing data via perfect path phylogenies. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2007, v:155, n:6-7, pp:788-805 [Journal]
  39. Piotr Berman, Amir Ben-Dor, Itsik Pe'er, Roded Sharan, Ron Shamir
    On the Complexity of Positional Sequencing by Hybridization [Citation Graph (0, 0)][DBLP]
    Electronic Colloquium on Computational Complexity (ECCC), 2001, v:8, n:54, pp:- [Journal]
  40. Gad Kimmel, Roded Sharan, Ron Shamir
    Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification, and Population Stratification. [Citation Graph (0, 0)][DBLP]
    INFORMS Journal on Computing, 2004, v:16, n:4, pp:360-370 [Journal]
  41. Anya Tsalenko, Roded Sharan, Vessela Kristensen, Hege Edvardsen, Anne-Lise Børresen-Dale, Amir Ben-Dor, Zohar Yakhini
    Analysis of Snp-expression Association Matrices. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2006, v:4, n:2, pp:259-274 [Journal]
  42. Eleazar Eskin, Roded Sharan, Eran Halperin
    A Note on Phasing Long Genomic Regions Using Local Haplotype Predictions. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2006, v:4, n:3, pp:639-648 [Journal]
  43. Amir Ben-Dor, Tzvika Hartman, Richard M. Karp, Benno Schwikowski, Roded Sharan, Zohar Yakhini
    Towards Optimally Multiplexed Applications of Universal Arrays. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:2/3, pp:476-492 [Journal]
  44. Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan
    On the Complexity of Positional Sequencing by Hybridization. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:8, n:4, pp:361-371 [Journal]
  45. Eran Segal, Roded Sharan
    A Discriminative Model for Identifying Spatial cis-Regulatory Modules. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:6, pp:822-834 [Journal]
  46. Roded Sharan, Jens Gramm, Zohar Yakhini, Amir Ben-Dor
    Multiplexing Schemes for Generic SNP Genotyping Assays. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:5, pp:514-533 [Journal]
  47. Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp
    Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:6, pp:835-846 [Journal]
  48. Tzvika Hartman, Roded Sharan
    A 1.5-approximation algorithm for sorting by transpositions and transreversals. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2005, v:70, n:3, pp:300-320 [Journal]
  49. Brian P. Kelley, Bingbing Yuan, Fran Lewitter, Roded Sharan, Brent R. Stockwell, Trey Ideker
    PathBLAST: a tool for alignment of protein interaction networks. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:83-88 [Journal]
  50. Roded Sharan, Asa Ben-Hur, Gabriela G. Loots, Ivan Ovcharenko
    CREME: Cis-Regulatory Module Explorer for the human genome. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:253-256 [Journal]
  51. Pavol Hell, Ron Shamir, Roded Sharan
    A Fully Dynamic Algorithm for Recognizing and Representing Proper Interval Graphs. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 2001, v:31, n:1, pp:289-305 [Journal]
  52. Assaf Natanzon, Ron Shamir, Roded Sharan
    A Polynomial Approximation Algorithm for the Minimum Fill-In Problem. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 2000, v:30, n:4, pp:1067-1079 [Journal]
  53. Itsik Pe'er, Tal Pupko, Ron Shamir, Roded Sharan
    Incomplete Directed Perfect Phylogeny. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 2004, v:33, n:3, pp:590-607 [Journal]
  54. Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail
    Islands of Tractability for Parsimony Haplotyping. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:3, pp:303-311 [Journal]
  55. Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker
    Comparison of Protein-Protein Interaction Confidence Assignment Schemes. [Citation Graph (0, 0)][DBLP]
    Systems Biology and Regulatory Genomics, 2005, pp:39-50 [Conf]

  56. Improved network-based identification of protein orthologs. [Citation Graph (, )][DBLP]


  57. A Propagation-based Algorithm for Inferring Gene-Disease Assocations. [Citation Graph (, )][DBLP]


  58. SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. [Citation Graph (, )][DBLP]


  59. Fast and Accurate Alignment of Multiple Protein Networks. [Citation Graph (, )][DBLP]


  60. An Algorithmic Framework for Predicting Side-Effects of Drugs. [Citation Graph (, )][DBLP]


  61. Topology-Free Querying of Protein Interaction Networks. [Citation Graph (, )][DBLP]


  62. An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and Its Applications to Orienting Protein Networks. [Citation Graph (, )][DBLP]


  63. Improved Orientations of Physical Networks. [Citation Graph (, )][DBLP]


  64. Constraint-based functional similarity of metabolic genes: going beyond network topology. [Citation Graph (, )][DBLP]


  65. Pepitope: epitope mapping from affinity-selected peptides. [Citation Graph (, )][DBLP]


  66. NetworkBLAST: comparative analysis of protein networks. [Citation Graph (, )][DBLP]


  67. A direct comparison of protein interaction confidence assignment schemes. [Citation Graph (, )][DBLP]


  68. On the complexity of SNP block partitioning under the perfect phylogeny model. [Citation Graph (, )][DBLP]


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