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Publications of Author

1. Craig J. Benham, Sampath Kannan, Tandy Warnow
   Of Chicken Teeth and Mouse Eyes, or Generalized Character Compatibility. [Citation Graph (0, 0)][DBLP]
   CPM, 1995, pp:17-26 [Conf]
   
2. Chengpeng Bi, Craig J. Benham
   The Approximate Algorithm for Analysis of the Strand Separation Transition in Super helical DNA Using Nearest Neighbor Energetics. [Citation Graph (0, 0)][DBLP]
   CSB, 2003, pp:460-461 [Conf]
   
3. Craig J. Benham
   Sites of Superhelical DNA Duplex Destabilization occour at Specific Regulatory Regions. [Citation Graph (0, 0)][DBLP]
   German Conference on Bioinformatics, 1996, pp:46-52 [Conf]
   
4. S. Goetze, A. Knopp, Craig J. Benham, Stephen A. Krawetz, Jürgen Bode
   Biomathematical and in vitro analysis of destabilized regions in the interferon gene cluster. [Citation Graph (0, 0)][DBLP]
   German Conference on Bioinformatics, 2001, pp:161- [Conf]
   
5. A. Knopp, S. Goetze, Craig J. Benham, Matthias Frisch, Stephen A. Krawetz, Jürgen Bode
   Analysis of biomathematically predicted Scaffold / Matrix Attached Regions (S/MARs) by three different approaches. [Citation Graph (0, 0)][DBLP]
   German Conference on Bioinformatics, 2001, pp:200- [Conf]
   
6. Huiquan Wang, Craig J. Benham
   Superhelically Destabilized Sites in the E. coli Genome: Implications for Promoter Prediction in Prokaryotes. [Citation Graph (0, 0)][DBLP]
   German Conference on Bioinformatics, 2004, pp:217-226 [Conf]
   
7. Craig J. Benham
   In Silico Biology: The emergence of a new biological methodology. [Citation Graph (0, 0)][DBLP]
   HERCMA, 2001, pp:91- [Conf]
   
8. Gabriela Hristescu, Craig J. Benham, Martin Farach
   DNA Strand Separation Prediction: A Parallel Implementation. [Citation Graph (0, 0)][DBLP]
   PDPTA, 1997, pp:610-619 [Conf]
   
9. Craig J. Benham
   Stress-Induced DNA Duplex Destabilization in Transcriptional Initiation. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2001, pp:103-114 [Conf]
   
10. Richard M. Fye, Craig J. Benham
    A formally exact method to numerically analyze local denaturation in superhelical DNA. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:79-84 [Conf]
    
11. Craig J. Benham
    Computation of DNA structural variability - a new predictor of DNA regulatory regions. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:5, pp:375-381 [Journal]
    
12. Huiquan Wang, Craig J. Benham
    Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:248- [Journal]
    
13. Craig J. Benham, Chengpeng Bi
    The Analysis of Stress-Induced Duplex Destabilization in Long Genomic DNA Sequences. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:4, pp:519-543 [Journal]
    
14. Craig J. Benham, Sampath Kannan, Michael Paterson, Tandy Warnow
    Hen's Teeth and Whale's Feet: Generalized Characters and Their Compatibility. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1995, v:2, n:4, pp:515-525 [Journal]
    
15. Huiquan Wang, Miroslava Kaloper, Craig J. Benham
    SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:373-378 [Journal]
    
16. Conrad A. Nieduszynski, Shin-ichiro Hiraga, Prashanth Ak, Craig J. Benham, Anne D. Donaldson
    OriDB: a DNA replication origin database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:40-46 [Journal]
    
17. Huiquan Wang, Craig J. Benham
    Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties. [Citation Graph (0, 0)][DBLP]
    Systems Biology and Regulatory Genomics, 2005, pp:212-224 [Conf]