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Martin Vingron: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Behshad Behzadi, Martin Vingron
    An Improved Algorithm for the Macro-evolutionary Phylogeny Problem. [Citation Graph (0, 0)][DBLP]
    CPM, 2006, pp:177-187 [Conf]
  2. Martin Vingron, Pavel A. Pevzner
    Multiple Sequence Comparison and n-Dimensional Image Reconstruction. [Citation Graph (0, 0)][DBLP]
    CPM, 1993, pp:243-253 [Conf]
  3. Jacek Blazewicz, Johann Christoph Freytag, Martin Vingron
    05441 Executive Summary - Managing and Mining Genome Information: Frontiers in Bioinformatics. [Citation Graph (0, 0)][DBLP]
    Managing and Mining Genome Information, 2005, pp:- [Conf]
  4. Jacek Blazewicz, Johann Christoph Freytag, Martin Vingron
    05441 Abstracts Collection - Managing and Mining Genome Information: Frontiers in Bioinformatics. [Citation Graph (0, 0)][DBLP]
    Managing and Mining Genome Information, 2005, pp:- [Conf]
  5. Stéphanie Boué, Martin Vingron, Evgenia V. Kriventseva, Ina Koch
    Theoretical analysis of alternative splice forms using computational methods. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:65-73 [Conf]
  6. Christoph Dieterich, Brian Cusack, Haiyan Wang, Katja Rateitschak, Antje Krause, Martin Vingron
    Annotating regulatory DNA based on man-mouse genomic comparison. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:84-90 [Conf]
  7. Christoph Dieterich, Ralf Herwig, Martin Vingron
    Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:50-56 [Conf]
  8. Pierre Nicodème, T. Doerks, Martin Vingron
    Proteome analysis based on motif statistics. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:161-171 [Conf]
  9. Antje Krause, Pierre Nicodème, Marc Rehmsmeier, Martin Vingron
    Automatic clustering of large sequence databases. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  10. Hannes Luz, Martin Vingron
    Familz specific rates of protein evolution. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2005, pp:133-144 [Conf]
  11. Thomas Meinel, Martin Vingron, Antje Krause
    The SYSTERS protein family database: Taxon-related protein family size distributions and singleton frequencies. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2003, pp:103-108 [Conf]
  12. Tobias Müller, Rainer Spang, Martin Vingron
    A new method for modeling protein evolution. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:2-8 [Conf]
  13. Marc Rehmsmeier, Martin Vingron
    Phylogeny meets sequence search. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:66-72 [Conf]
  14. Heiko A. Schmidt, Martin Vingron
    pfastDNAml: Using Parallel Computing for Maximum Likelihood Phylogenetic Analysis. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  15. Benno Schwikowski, Martin Vingron
    Attacking Generalized tree Alignment by a Deferred Path Heuristic. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:302-304 [Conf]
  16. Benno Schwikowski, Martin Vingron
    A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics - Selected Papers, 1996, pp:115-124 [Conf]
  17. Rainer Spang, Martin Vingron
    Statistics of large scale sequence searching. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:33-35 [Conf]
  18. Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork
    Towards detection of sequence orthologs. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:25-30 [Conf]
  19. Christine Steinhoff, Tobias Müller, Ulrike A. Nuber, Martin Vingron
    Gaussian Mixture Density Estimation Applied to Microarray Data. [Citation Graph (0, 0)][DBLP]
    IDA, 2003, pp:418-429 [Conf]
  20. Martin Vingron
    Alignment and Phylogeny Construction for Biological Sequences. [Citation Graph (0, 0)][DBLP]
    IFIP Congress: Fundamentals - Foundations of Computer Science, 1998, pp:27-30 [Conf]
  21. Christoph Dieterich, Sven Rahmann, Martin Vingron
    Functional inference from non-random distributions of conserved predicted transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:109-115 [Conf]
  22. Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron
    Identifying splits with clear separation: a new class discovery method for gene expression data. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:107-114 [Conf]
  23. Wolfgang Huber, Anja von Heydebreck, Holger Sültmann, Annemarie Poustka, Martin Vingron
    Variance stabilization applied to microarray data calibration and to the quantification of differential expression. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:96-104 [Conf]
  24. Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
    Optimal robust non-unique probe selection using Integer Linear Programming. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:186-193 [Conf]
  25. Stefan Burkhardt, Andreas Crauser, Paolo Ferragina, Hans-Peter Lenhof, Eric Rivals, Martin Vingron
    q-gram based database searching using a suffix array (QUASAR). [Citation Graph (0, 0)][DBLP]
    RECOMB, 1999, pp:77-83 [Conf]
  26. Behshad Behzadi, Martin Vingron
    Reconstructing Domain Compositions of Ancestral Multi-domain Proteins. [Citation Graph (0, 0)][DBLP]
    Comparative Genomics, 2006, pp:1-10 [Conf]
  27. Richard Desper, Martin Vingron
    Tree fitting: an algebraic approach using profile distances. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:119-126 [Conf]
  28. Steffen Heber, Jens Stoye, Jörg D. Hoheisel, Martin Vingron
    Contig selection in physical mapping. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:155-164 [Conf]
  29. Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron
    An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2006, pp:85-98 [Conf]
  30. Hans-Peter Lenhof, Knut Reinert, Martin Vingron
    A polyhedral approach to RNA sequence structure alignment. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:153-162 [Conf]
  31. Thomas Manke, Christoph Dieterich, Martin Vingron
    Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome. [Citation Graph (0, 0)][DBLP]
    Regulatory Genomics, 2004, pp:14-21 [Conf]
  32. Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt
    Alignment Statistics for Long-Range Correlated Genomic Sequences. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2006, pp:426-440 [Conf]
  33. Benno Schwikowski, Martin Vingron
    The deferred path heuristic for the generalized tree alignment problem. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:257-266 [Conf]
  34. Christine Steinhoff, Martin Vingron
    Normalization and quantification of differential expression in gene expression microarrays. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2006, v:7, n:2, pp:166-177 [Journal]
  35. Tim Beißbarth, Kurt Fellenberg, Benedikt Brors, R. Arribas-Prat, J. M. Boer, Nicole C. Hauser, Marcel Scheideler, Jörg D. Hoheisel, G. Schütz, Annemarie Poustka, Martin Vingron
    Processing and quality control of DNA array hybridization data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:11, pp:1014-1022 [Journal]
  36. Torsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer
    The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:2, pp:268-270 [Journal]
  37. Kurt Fellenberg, Nicole C. Hauser, Benedikt Brors, Jörg D. Hoheisel, Martin Vingron
    Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:3, pp:423-433 [Journal]
  38. Shobhit Gupta, Dorothea Zink, Bernhard Korn, Martin Vingron, Stefan A. Haas
    Genome wide identification and classification of alternative splicing based on EST data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:16, pp:2579-2585 [Journal]
  39. Antje Krause, Pierre Nicodème, Erich Bornberg-Bauer, Marc Rehmsmeier, Martin Vingron
    WWW access to the SYSTERS protein sequence cluster set. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:3, pp:262-263 [Journal]
  40. Antje Krause, Martin Vingron
    A set-theoretic approach to database searching and clustering. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:5, pp:430-438 [Journal]
  41. Hannes Luz, Martin Vingron
    Family specific rates of protein evolution. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:10, pp:1166-1171 [Journal]
  42. Morris Michael, Christoph Dieterich, Martin Vingron
    SITEBLAST-rapid and sensitive local alignment of genomic sequences employing motif anchors. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2093-2094 [Journal]
  43. R. Rechid, Martin Vingron, P. Argos
    A new interactive protein sequence alignment program and comparison of its results with widely used algorithms. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1989, v:5, n:2, pp:107-113 [Journal]
  44. Heiko A. Schmidt, Korbinian Strimmer, Martin Vingron, Arndt von Haeseler
    TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:3, pp:502-504 [Journal]
  45. Rainer Spang, Martin Vingron
    Limits of homology detection by pairwise sequence comparison. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:4, pp:338-342 [Journal]
  46. Rainer Spang, Martin Vingron
    Statistics of large-scale sequence searching. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:3, pp:279-284 [Journal]
  47. Martin Vingron
    Bioinformatics needs to adopt statistical thinking - Editorial. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:5, pp:389-390 [Journal]
  48. Martin Vingron, P. Argos
    A fast and sensitive multiple sequence alignment algorithm. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1989, v:5, n:2, pp:115-121 [Journal]
  49. Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork
    Towards detection of orthologues in sequence databases. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:3, pp:285-289 [Journal]
  50. Helge G. Roider, Aditi Kanhere, Thomas Manke, Martin Vingron
    Predicting transcription factor affinities to DNA from a biophysical model. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:134-141 [Journal]
  51. Abha Singh Bais, Steffen Grossmann, Martin Vingron
    Simultaneous alignment and annotation of cis-regulatory regions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:44-49 [Journal]
  52. Antje Krause, Jens Stoye, Martin Vingron
    Large scale hierarchical clustering of protein sequences. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:15- [Journal]
  53. Oliver Eulenstein, Martin Vingron
    On the Equivalence of Two Tree Mapping Measures. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1998, v:88, n:1-3, pp:103-128 [Journal]
  54. John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron
    A polyhedral approach to sequence alignment problems. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2000, v:104, n:1-3, pp:143-186 [Journal]
  55. Benno Schwikowski, Martin Vingron
    Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2003, v:127, n:1, pp:95-117 [Journal]
  56. Martin Vingron, Michael S. Waterman
    Alignment Networks and Electrical Networks. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1996, v:71, n:1-3, pp:297-309 [Journal]
  57. Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
    Integer linear programming approaches for non-unique probe selection. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2007, v:155, n:6-7, pp:840-856 [Journal]
  58. Katja Rateitschak, Tobias Müller, Martin Vingron
    Annotating significant pairs of transcription factor binding sites in regulatory DNA. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2004, v:4, n:, pp:- [Journal]
  59. Dietmar Schomburg, Martin Vingron
    Bioinformatics research and education in Germany. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2002, v:2, n:, pp:15- [Journal]
  60. Anja von Heydebreck, Silke Sperling, Bogac Kaynak, Hans Lehrach, Martin Vingron
    Genexpressionsanalyse komplexer klinischer Phänotypen mittels cDNS-Arrays (Gene Expression Profiling of Complex Clinical Phenotypes using cDNA-Arrays). [Citation Graph (0, 0)][DBLP]
    it - Information Technology, 2004, v:46, n:1, pp:26-30 [Journal]
  61. Oliver Eulenstein, Boris Mirkin, Martin Vingron
    Duplication-Based Measures of Difference Between Gene and Species Trees. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:1, pp:135-148 [Journal]
  62. Steffen Heber, Jens Stoye, Marcus Frohme, Jörg D. Hoheisel, Martin Vingron
    Contig Selection in Physical Mapping. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:3-4, pp:395-408 [Journal]
  63. Hans-Peter Lenhof, Knut Reinert, Martin Vingron
    A Polyhedral Approach to RNA Sequence Structure Alignment. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:3, pp:517-530 [Journal]
  64. Tobias Müller, Martin Vingron
    Modeling Amino Acid Replacement. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:6, pp:761-776 [Journal]
  65. Benno Schwikowski, Martin Vingron
    The Deferred Path Heuristic for the Generalized Tree Alignment Problem. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:3, pp:415-431 [Journal]
  66. Martin Vingron, Arndt von Haeseler
    Towards Integration of Multiple Alignment and Phylogenetic Tree Construction. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:1, pp:23-34 [Journal]
  67. Heiko A. Schmidt, Ekkehard Petzold, Martin Vingron, Arndt von Haeseler
    Molecular phylogenetics: parallelized parameter estimation and quartet puzzling. [Citation Graph (0, 0)][DBLP]
    J. Parallel Distrib. Comput., 2003, v:63, n:7-8, pp:719-727 [Journal]
  68. Christoph Dieterich, Haiyan Wang, Katja Rateitschak, Hannes Luz, Martin Vingron
    CORG: a database for COmparative Regulatory Genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:55-57 [Journal]
  69. Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler
    IntAct: an open source molecular interaction database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:452-455 [Journal]
  70. Antje Krause, Stefan A. Haas, Eivind Coward, Martin Vingron
    SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:299-300 [Journal]
  71. Antje Krause, Jens Stoye, Martin Vingron
    The SYSTERS protein sequence cluster set. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:270-272 [Journal]
  72. Nicolas Pollet, Heiko A. Schmidt, Volker Gawantka, Martin Vingron, Christof Niehrs
    Axeldb: a Xenopus laevis database focusing on gene expression. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:139-140 [Journal]
  73. Thomas Meinel, Antje Krause, Hannes Luz, Martin Vingron, Eike Staub
    The SYSTERS Protein Family Database in 2005. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:226-229 [Journal]
  74. Stefan Roepcke, Petko Fiziev, P. H. Seeburg, Martin Vingron
    SVC: structured visualization of evolutionary sequence conservation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:271-273 [Journal]
  75. Stefan Roepcke, Steffen Grossmann, Sven Rahmann, Martin Vingron
    T-Reg Comparator: an analysis tool for the comparison of position weight matrices. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:438-441 [Journal]
  76. Shobhit Gupta, Martin Vingron, Stefan A. Haas
    T-STAG: resource and web-interface for tissue-specific transcripts and genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:654-658 [Journal]
  77. Christoph Dieterich, M. W. Franz, Martin Vingron
    Developments in CORG: a gene-centric comparative genomics resource. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:32-35 [Journal]

  78. Statistical Detection of Cooperative Transcription Factors with Similarity Adjustment. [Citation Graph (, )][DBLP]


  79. A physical model for tiling array analysis. [Citation Graph (, )][DBLP]


  80. Fast and Adaptive Variable Order Markov Chain Construction. [Citation Graph (, )][DBLP]


  81. homepages/84/1721 journals/jiis/BarbanconM07 conf/fqas/BarbanconM04 conf/bibe/NakhlehMBPD03 conf/ideas/BarbanconM02 Exact Score Distribution Computation for Similarity Searches in Ontologies. [Citation Graph (, )][DBLP]


  82. The BREW workshop series: a stimulating experience in PhD education. [Citation Graph (, )][DBLP]


  83. Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis. [Citation Graph (, )][DBLP]


  84. Natural similarity measures between position frequency matrices with an application to clustering. [Citation Graph (, )][DBLP]


  85. Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration. [Citation Graph (, )][DBLP]


  86. PASTAA: identifying transcription factors associated with sets of co-regulated genes. [Citation Graph (, )][DBLP]


  87. Statistical detection of cooperative transcription factors with similarity adjustment. [Citation Graph (, )][DBLP]


  88. Prioritization of gene regulatory interactions from large-scale modules in yeast. [Citation Graph (, )][DBLP]


  89. The Otto Warburg International Summer School and Workshop on Networks and Regulation. [Citation Graph (, )][DBLP]


  90. Comparison of sequence-dependent tiling array normalization approaches. [Citation Graph (, )][DBLP]


  91. A joint model of regulatory and metabolic networks. [Citation Graph (, )][DBLP]


  92. A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes. [Citation Graph (, )][DBLP]


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