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Sridhar Hannenhalli: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Kien A. Hua, Sridhar Hannenhalli
    Parallel Transitive Closure Computations Using Topological Sort. [Citation Graph (3, 0)][DBLP]
    PDIS, 1991, pp:122-129 [Conf]
  2. Piotr Berman, Sridhar Hannenhalli
    Fast Sorting by Reversal. [Citation Graph (0, 0)][DBLP]
    CPM, 1996, pp:168-185 [Conf]
  3. Sridhar Hannenhalli
    Polynomial-time Algorithm for Computing Translocation Distance between Genomes. [Citation Graph (0, 0)][DBLP]
    CPM, 1995, pp:162-176 [Conf]
  4. Piotr Berman, Sridhar Hannenhalli, Marek Karpinski
    1.375-Approximation Algorithm for Sorting by Reversals. [Citation Graph (0, 0)][DBLP]
    ESA, 2002, pp:200-210 [Conf]
  5. Sridhar Hannenhalli, Pavel A. Pevzner
    Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem). [Citation Graph (0, 0)][DBLP]
    FOCS, 1995, pp:581-592 [Conf]
  6. N. Chandrasekharan, Sridhar Hannenhalli
    Efficient Algorithms for Computing Matching and Chromatic Polynominals on Series-Parallel Graphs. [Citation Graph (0, 0)][DBLP]
    ICCI, 1992, pp:42-45 [Conf]
  7. Sridhar Hannenhalli, Kalyan S. Perumalla, N. Chandrasekharan, R. Sridhar
    A Distributed Algorithm for Ear Decomposition. [Citation Graph (0, 0)][DBLP]
    ICCI, 1993, pp:180-184 [Conf]
  8. Sridhar Hannenhalli, Samuel Levy
    Promoter prediction in the human genome. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:90-96 [Conf]
  9. Sridhar Hannenhalli, Li-San Wang
    Enhanced position weight matrices using mixture models. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:204-212 [Conf]
  10. Logan Everett, Li-San Wang, Sridhar Hannenhalli
    Dense subgraph computation via stochastic search: application to detect transcriptional modules. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:117-123 [Conf]
  11. Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena
    Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:1-2 [Conf]
  12. Perry Evans, Greg Donahue, Sridhar Hannenhalli
    Conservation Patterns in cis-Elements Reveal Compensatory Mutations. [Citation Graph (0, 0)][DBLP]
    Comparative Genomics, 2006, pp:186-199 [Conf]
  13. Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena
    Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. [Citation Graph (0, 0)][DBLP]
    SODA, 1997, pp:390-399 [Conf]
  14. Sridhar Hannenhalli, Pavel A. Pevzner
    To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution). [Citation Graph (0, 0)][DBLP]
    SODA, 1996, pp:304-313 [Conf]
  15. Sridhar Hannenhalli, Pavel A. Pevzner
    Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. [Citation Graph (0, 0)][DBLP]
    STOC, 1995, pp:178-189 [Conf]
  16. Sridhar Hannenhalli, W. Feldman, H. F. Lewis, Steven Skiena, Pavel A. Pevzner
    Positional sequencing by hybridization. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:1, pp:19-24 [Journal]
  17. Samuel Levy, Sridhar Hannenhalli, Christopher T. Workman
    Enrichment of regulatory signals in conserved non-coding genomic sequence. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:10, pp:871-877 [Journal]
  18. Junwen Wang, Sridhar Hannenhalli
    Generalizations of Markov model to characterize biological sequences. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:219- [Journal]
  19. Sridhar Hannenhalli
    Polynomial-time Algorithm for Computing Translocation Distance Between Genomes. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1996, v:71, n:1-3, pp:137-151 [Journal]
  20. Piotr Berman, Sridhar Hannenhalli, Marek Karpinski
    1.375-Approximation Algorithm for Sorting by Reversals [Citation Graph (0, 0)][DBLP]
    Electronic Colloquium on Computational Complexity (ECCC), 2001, v:8, n:47, pp:- [Journal]
  21. Sridhar Hannenhalli, Pavel A. Pevzner
    Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals. [Citation Graph (0, 0)][DBLP]
    J. ACM, 1999, v:46, n:1, pp:1-27 [Journal]
  22. Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena
    Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:3, pp:275-296 [Journal]
  23. Vineet Bafna, Dan Gusfield, Sridhar Hannenhalli, Shibu Yooseph
    A Note on Efficient Computation of Haplotypes via Perfect Phylogeny. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:5, pp:858-866 [Journal]
  24. Vineet Bafna, Sridhar Hannenhalli, Ken Rice, Lisa Vawter
    Ligand-Receptor Pairing Via Tree Comparison. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:1-2, pp:59-70 [Journal]
  25. Vlado Dancík, Sridhar Hannenhalli, S. Muthukrishnan
    Hardness of Flip-Cut Problems from Optical Mapping. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:2, pp:119-126 [Journal]
  26. Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli
    An Interaction-Dependent Model for Transcription Factor Binding. [Citation Graph (0, 0)][DBLP]
    Systems Biology and Regulatory Genomics, 2005, pp:225-234 [Conf]

  27. Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction. [Citation Graph (, )][DBLP]


  28. Eukaryotic transcription factor binding sites - modeling and integrative search methods. [Citation Graph (, )][DBLP]


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