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Alejandro A. Schäffer: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Amos Fiat, Moni Naor, Alejandro A. Schäffer, Jeanette P. Schmidt, Alan Siegel
    Storing and Searching a Multikey Table (Extended Abstract) [Citation Graph (1, 0)][DBLP]
    STOC, 1988, pp:344-353 [Conf]
  2. Sandeep K. Gupta, John D. Kececioglu, Alejandro A. Schäffer
    Making the Shortest-Paths Approach to Sum-of-Pairs Multiple Sequence Alignment More Space Efficient in Practice (Extended Abstract). [Citation Graph (0, 0)][DBLP]
    CPM, 1995, pp:128-143 [Conf]
  3. Ramana M. Idury, Alejandro A. Schäffer
    Dynamic Dictionary Matching with Failure Functions (Extended Abstract). [Citation Graph (0, 0)][DBLP]
    CPM, 1992, pp:276-287 [Conf]
  4. Ramana M. Idury, Alejandro A. Schäffer
    Multiple Matching of Parameterized Patterns. [Citation Graph (0, 0)][DBLP]
    CPM, 1994, pp:226-239 [Conf]
  5. Vinay S. Pai, Alejandro A. Schäffer, Peter J. Varman
    Markov Analysis of Multiple-Disk Prefetching for External Mergesort. [Citation Graph (0, 0)][DBLP]
    ICPP (3), 1992, pp:272-279 [Conf]
  6. Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer
    Inverse Inbreeding Coefficient Problems with an Application to Linkage Analysis of Recessive Diseases in Inbred Populations. [Citation Graph (0, 0)][DBLP]
    SODA, 1999, pp:840-841 [Conf]
  7. Amihood Amir, Martin Farach, Ramana M. Idury, Johannes A. La Poutré, Alejandro A. Schäffer
    Improved Dynamic Dictionary Matching. [Citation Graph (0, 0)][DBLP]
    SODA, 1993, pp:392-401 [Conf]
  8. Pilar de la Torre, Raymond Greenlaw, Alejandro A. Schäffer
    Optimal Edge Ranking of Trees in Polynomial Time. [Citation Graph (0, 0)][DBLP]
    SODA, 1993, pp:138-144 [Conf]
  9. Ramana M. Idury, Alejandro A. Schäffer
    Multiple matching of rectangular patterns. [Citation Graph (0, 0)][DBLP]
    STOC, 1993, pp:81-90 [Conf]
  10. Joseph Naor, Moni Naor, Alejandro A. Schäffer
    Fast Parallel Algorithms for Chordal Graphs (Extended Abstract) [Citation Graph (0, 0)][DBLP]
    STOC, 1987, pp:355-364 [Conf]
  11. Christos H. Papadimitriou, Alejandro A. Schäffer, Mihalis Yannakakis
    On the Complexity of Local Search (Extended Abstract) [Citation Graph (0, 0)][DBLP]
    STOC, 1990, pp:438-445 [Conf]
  12. S. Rao Kosaraju, Alejandro A. Schäffer, Leslie G. Biesecker
    Approximation Algorithms for a Genetic Diagnostics Problem. [Citation Graph (0, 0)][DBLP]
    WADS, 1997, pp:69-92 [Conf]
  13. Pilar de la Torre, Raymond Greenlaw, Alejandro A. Schäffer
    Optimal Edge Ranking of Trees in Polynomial Time. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 1995, v:13, n:6, pp:592-618 [Journal]
  14. Maricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Alejandro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant
    A structure-based method for protein sequence alignment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:8, pp:1451-1456 [Journal]
  15. Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala
    WindowMasker: window-based masker for sequenced genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:2, pp:134-141 [Journal]
  16. Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul
    IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:12, pp:1000-1011 [Journal]
  17. Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer
    Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2000, v:104, n:1-3, pp:3-44 [Journal]
  18. Franz Aurenhammer, Michael Formann, Ramana M. Idury, Alejandro A. Schäffer, Frank Wagner
    Faster Isometric Embedding in Products of Complete Graphs. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1994, v:52, n:1, pp:17-28 [Journal]
  19. Alejandro A. Schäffer
    A Faster Algorithm to Recognize Undirected Path Graphs. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1993, v:43, n:2, pp:261-295 [Journal]
  20. Amihood Amir, Martin Farach, Ramana M. Idury, Johannes A. La Poutré, Alejandro A. Schäffer
    Improved Dynamic Dictionary Matching [Citation Graph (0, 0)][DBLP]
    Inf. Comput., 1995, v:119, n:2, pp:258-282 [Journal]
  21. Ramana M. Idury, Alejandro A. Schäffer
    Multiple Matching of Rectangular Patterns [Citation Graph (0, 0)][DBLP]
    Inf. Comput., 1995, v:117, n:1, pp:78-90 [Journal]
  22. Alejandro A. Schäffer
    Optimal Node Ranking of Trees in Linear Time. [Citation Graph (0, 0)][DBLP]
    Inf. Process. Lett., 1989, v:33, n:2, pp:91-96 [Journal]
  23. Alejandro A. Schäffer
    A Tighter Upper Bound on the Worst Case Behavior of Conway's Parallel Sorting Algorithm. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 1988, v:9, n:3, pp:321-342 [Journal]
  24. Alejandro A. Schäffer, Christopher J. Van Wyk
    Convex Hulls of Piecewise-Smooth Jordan Curves. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 1987, v:8, n:1, pp:66-94 [Journal]
  25. Richard Desper, Feng Jiang, Olli-P. Kallioniemi, Holger Moch, Christos H. Papadimitriou, Alejandro A. Schäffer
    Distance-Based Reconstruction of Tree Models for Oncogenesis. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:6, pp:789-803 [Journal]
  26. Richard Desper, Feng Jiang, Olli-P. Kallioniemi, Holger Moch, Christos H. Papadimitriou, Alejandro A. Schäffer
    Inferring Tree Models for Oncogenesis from Comparative Genome Hybridization Data. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1999, v:6, n:1, pp:37-52 [Journal]
  27. Sandeep K. Gupta, John D. Kececioglu, Alejandro A. Schäffer
    Improving the Practical Space and Time Efficiency of the Shortest-Paths Approach to Sum-of-Pairs Multiple Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1995, v:2, n:3, pp:459-472 [Journal]
  28. S. Rao Kosaraju, Alejandro A. Schäffer, Leslie G. Biesecker
    Approximation Algorithms for a Genetic Diagnostics Problem. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:1, pp:9-26 [Journal]
  29. Amos Fiat, J. Ian Munro, Moni Naor, Alejandro A. Schäffer, Jeanette P. Schmidt, Alan Siegel
    An Implicit Data Structure for Searching a Multikey Table in Logarithmic Time. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 1991, v:43, n:3, pp:406-424 [Journal]
  30. Joan Feigenbaum, Alejandro A. Schäffer
    Recognizing Composite Graphs is Equivalent to Testing Graph Isomorphism. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1986, v:15, n:2, pp:619-627 [Journal]
  31. Joseph Naor, Moni Naor, Alejandro A. Schäffer
    Fast Parallel Algorithms for Chordal Graphs. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1989, v:18, n:2, pp:327-349 [Journal]
  32. Alejandro A. Schäffer, Mihalis Yannakakis
    Simple Local Search Problems That are Hard to Solve. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1991, v:20, n:1, pp:56-87 [Journal]
  33. Ramsey W. Haddad, Alejandro A. Schäffer
    Recognizing Bellman-Ford-Orderable Graphs. [Citation Graph (0, 0)][DBLP]
    SIAM J. Discrete Math., 1988, v:1, n:4, pp:447-471 [Journal]
  34. Ramana M. Idury, Alejandro A. Schäffer
    Triangulating Three-Colored Graphs in Linear Time and Linear Space. [Citation Graph (0, 0)][DBLP]
    SIAM J. Discrete Math., 1993, v:6, n:2, pp:289-293 [Journal]
  35. Ramana M. Idury, Alejandro A. Schäffer
    Dynamic Dictionary Matching with Failure Functions. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1994, v:131, n:2, pp:295-310 [Journal]
  36. Ramana M. Idury, Alejandro A. Schäffer
    Multiple Matching of Parametrized Patterns. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1996, v:154, n:2, pp:203-224 [Journal]
  37. Vinay S. Pai, Alejandro A. Schäffer, Peter J. Varman
    Markov Analysis of Multiple-Disk Prefetching Strategies for External Merging. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1994, v:128, n:1&2, pp:211-239 [Journal]
  38. Alejandro A. Schäffer, Edward Stallknecht Rice, William Cook, Richa Agarwala
    rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:9, pp:1156-1158 [Journal]
  39. Alejandro A. Schäffer
    Shortest prefix strings containing all subset permutations. [Citation Graph (0, 0)][DBLP]
    Discrete Mathematics, 1987, v:64, n:2-3, pp:239-252 [Journal]
  40. Joan Feigenbaum, Alejandro A. Schäffer
    Finding the prime factors of strong direct product graphs in polynomial time. [Citation Graph (0, 0)][DBLP]
    Discrete Mathematics, 1992, v:109, n:1-3, pp:77-102 [Journal]

  41. Improved BLAST searches using longer words for protein seeding. [Citation Graph (, )][DBLP]


  42. Database indexing for production MegaBLAST searches. [Citation Graph (, )][DBLP]


  43. Database indexing for production MegaBLAST searches. [Citation Graph (, )][DBLP]


  44. Recognizing brittle graphs: remarks on a paper of Hoàng and Khouzam. [Citation Graph (, )][DBLP]


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