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Jotun Hein: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang
    On the Complexity of Comparing Evolutionary Trees (Extended Abstract). [Citation Graph (0, 0)][DBLP]
    CPM, 1995, pp:177-190 [Conf]
  2. Christian N. S. Pedersen, Rune B. Lyngsø, Jotun Hein
    Comparison of Coding DNA. [Citation Graph (0, 0)][DBLP]
    CPM, 1998, pp:153-173 [Conf]
  3. Gerton Lunter, Jotun Hein
    A nucleotide substitution model with nearest-neighbour interactions. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:216-223 [Conf]
  4. Jotun Hein
    An Algorithm for Statistical Alignment of Sequences Related by a Binary Tree. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:179-190 [Conf]
  5. István Miklós, Jotun Hein
    Genome Rearrangement in Mitochondria and Its Computational Biology. [Citation Graph (0, 0)][DBLP]
    Comparative Genomics, 2004, pp:85-96 [Conf]
  6. Jakob Fredslund, Jotun Hein, Tejs Scharling
    A Large Version of the Small Parsimony Problem. [Citation Graph (0, 0)][DBLP]
    WABI, 2003, pp:417-432 [Conf]
  7. Paul Jenkins, Rune B. Lyngsø, Jotun Hein
    How Many Transcripts Does It Take to Reconstruct the Splice Graph? [Citation Graph (0, 0)][DBLP]
    WABI, 2006, pp:103-114 [Conf]
  8. Gerton Lunter, István Miklós, Alexei Drummond, Jens Ledet Jensen, Jotun Hein
    Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model. [Citation Graph (0, 0)][DBLP]
    WABI, 2003, pp:228-244 [Conf]
  9. Rune B. Lyngsø, Yun S. Song, Jotun Hein
    Minimum Recombination Histories by Branch and Bound. [Citation Graph (0, 0)][DBLP]
    WABI, 2005, pp:239-250 [Conf]
  10. Yun S. Song, Jotun Hein
    Parsimonious Reconstruction of Sequence Evolution and Haplotype Blocks. [Citation Graph (0, 0)][DBLP]
    WABI, 2003, pp:287-302 [Conf]
  11. Mike A. Steel, Jotun Hein
    Applying the Thorne-Kishino-Felsenstein model to sequence evolution on a star-shaped tree. [Citation Graph (0, 0)][DBLP]
    Appl. Math. Lett., 2001, v:14, n:6, pp:679-684 [Journal]
  12. Bjarne Knudsen, Jotun Hein
    RNA secondary structure prediction using stochastic context-free grammars and evolutionary history. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:6, pp:446-454 [Journal]
  13. Stephen McCauley, Jotun Hein
    Using hidden Markov models and observed evolution to annotate viral genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:11, pp:1308-1316 [Journal]
  14. István Miklós, Péter Ittzés, Jotun Hein
    ParIS Genome Rearrangement server. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:6, pp:817-820 [Journal]
  15. Jakob Skou Pedersen, Jotun Hein
    Gene finding with a hidden Markov model of genome structure and evolution. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:2, pp:219-227 [Journal]
  16. Thomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Jesper N. Madsen, Jotun Hein, Leif Schauser
    GeneRecon - a coalescent based tool for fine-scale association mapping. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:18, pp:2317-2318 [Journal]
  17. Gerton Lunter, István Miklós, Alexei Drummond, Jens Ledet Jensen, Jotun Hein
    Bayesian coestimation of phylogeny and sequence alignment. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:83- [Journal]
  18. Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang
    On the Complexity of Comparing Evolutionary Trees. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1996, v:71, n:1-3, pp:153-169 [Journal]
  19. Gerton Lunter, István Miklós, Yun S. Song, Jotun Hein
    An Efficient Algorithm for Statistical Multiple Alignment on Arbitrary Phylogenetic Trees. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:10, n:6, pp:869-889 [Journal]
  20. Yun S. Song, Jotun Hein
    Constructing Minimal Ancestral Recombination Graphs. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:2, pp:147-169 [Journal]
  21. Bjarne Knudsen, Jotun Hein
    Pfold: RNA secondary structure prediction using stochastic context-free grammars. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3423-3428 [Journal]
  22. Yun S. Song, Rune B. Lyngsø, Jotun Hein
    Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:3, pp:239-251 [Journal]
  23. Saskia de Groot, Thomas Mailund, Jotun Hein
    Comparative annotation of viral genomes with non-conserved gene structure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:9, pp:1080-1089 [Journal]

  24. Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony. [Citation Graph (, )][DBLP]


  25. Annotation of selection strengths in viral genomes. [Citation Graph (, )][DBLP]


  26. Combining statistical alignment and phylogenetic footprinting to detect regulatory elements. [Citation Graph (, )][DBLP]


  27. StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees. [Citation Graph (, )][DBLP]


  28. A stochastic model for the evolution of metabolic networks with neighbor dependence. [Citation Graph (, )][DBLP]


  29. Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison. [Citation Graph (, )][DBLP]


  30. Investigating selection on viruses: a statistical alignment approach. [Citation Graph (, )][DBLP]


  31. How reliably can we predict the reliability of protein structure predictions? [Citation Graph (, )][DBLP]


  32. Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity. [Citation Graph (, )][DBLP]


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