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Webb Miller: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Sun Wu, Udi Manber, Gene Myers, Webb Miller
    An O(NP) Sequence Comparison Algorithm. [Citation Graph (2, 0)][DBLP]
    Inf. Process. Lett., 1990, v:35, n:6, pp:317-323 [Journal]
  2. Webb Miller, Eugene W. Myers
    A File Comparison Program. [Citation Graph (1, 0)][DBLP]
    Softw., Pract. Exper., 1985, v:15, n:11, pp:1025-1040 [Journal]
  3. Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller
    Parametric Recomuting in Alignment Graphs. [Citation Graph (0, 0)][DBLP]
    CPM, 1994, pp:87-101 [Conf]
  4. Webb Miller, Ahmed Elsherbini, Jamie Peck, Cathy Riemer, Scott Schwartz, Nikola Stojanovic, Ross C. Hardison
    A database for globin gene expression data. [Citation Graph (0, 0)][DBLP]
    HICSS (5), 1995, pp:62-71 [Conf]
  5. Webb Miller
    The Error in Interval Arithmetic. [Citation Graph (0, 0)][DBLP]
    Interval Mathematics, 1975, pp:246-250 [Conf]
  6. Vamsi Veeramachaneni, Piotr Berman, Webb Miller
    Aligning Two Fragmented Sequences. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2002, pp:- [Conf]
  7. Jia Li, Webb Miller
    Significance Of inter-species matches when evolutionary rate varies. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2002, pp:216-224 [Conf]
  8. Piotr Berman, Zheng Zhang 0004, Yuri I. Wolf, Eugene V. Koonin, Webb Miller
    Winnowing sequences from a database search. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1999, pp:50-58 [Conf]
  9. Gene Myers, Sanford Selznick, Zheng Zhang 0004, Webb Miller
    Progressive multiple alignment with constraints. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:220-225 [Conf]
  10. Zheng Zhang 0004, William R. Pearson, Webb Miller
    Aligning a DNA sequence with a protein sequence. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:337-343 [Conf]
  11. Zheng Zhang 0004, Piotr Berman, Webb Miller
    Alignments without low-scoring regions. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:294-301 [Conf]
  12. Gene Myers, Webb Miller
    Chaining Multiple-Alignment Fragments in Sub-Quadratic Time. [Citation Graph (0, 0)][DBLP]
    SODA, 1995, pp:38-47 [Conf]
  13. Webb Miller
    Toward Mechanical Verification of Properties of Roundoff Error Propagation [Citation Graph (0, 0)][DBLP]
    STOC, 1973, pp:50-58 [Conf]
  14. Webb Miller
    Computational Complexity and Numerical Stability [Citation Graph (0, 0)][DBLP]
    STOC, 1974, pp:317-322 [Conf]
  15. Minmei Hou, Piotr Berman, Louxin Zhang, Webb Miller
    Controlling Size When Aligning Multiple Genomic Sequences with Duplications. [Citation Graph (0, 0)][DBLP]
    WABI, 2006, pp:138-149 [Conf]
  16. Nikola Stojanovic, Piotr Berman, Deborah Gumucio, Ross C. Hardison, Webb Miller
    A Linear-Time Algorithm for the 1-Mismatch Problem. [Citation Graph (0, 0)][DBLP]
    WADS, 1997, pp:126-135 [Conf]
  17. Kun-Mao Chao, Webb Miller
    Linear-Space Algorithms that Build Local Alignments from Fragments. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 1995, v:13, n:1/2, pp:106-134 [Journal]
  18. Thomas Wiehe, Roderic Guigó, Webb Miller
    Genome Sequence Comparisons: Hurdles in the Fast Lane to Functional Genomics. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2000, v:1, n:4, pp:381-388 [Journal]
  19. Kun-Mao Chao, Ross C. Hardison, Webb Miller
    Locating well-conserved regions within a pairwise alignment. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:4, pp:387-396 [Journal]
  20. Kun-Mao Chao, William R. Pearson, Webb Miller
    Aligning two sequences within a specified diagonal band. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1992, v:8, n:5, pp:481-487 [Journal]
  21. Kun-Mao Chao, Jinghui Zhang, James Ostell, Webb Miller
    A local alignment tool for very long DNA sequences. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1995, v:11, n:2, pp:147-153 [Journal]
  22. Kun-Mao Chao, Jinghui Zhang, James Ostell, Webb Miller
    A tool for aligning very similar DNA sequences. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:1, pp:75-80 [Journal]
  23. Xiaoqiu Huang, Ross C. Hardison, Webb Miller
    A space-efficient algorithm for local similarities. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1990, v:6, n:4, pp:373-381 [Journal]
  24. Xiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison
    Parallelization of a local similarity algorithm. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1992, v:8, n:2, pp:155-165 [Journal]
  25. Webb Miller
    Comparison of genomic DNA sequences: solved and unsolved problems. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:5, pp:391-397 [Journal]
  26. Webb Miller
    Building multiple alignments from pairwise alignments. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:2, pp:169-176 [Journal]
  27. Webb Miller, J. Barr, Kenneth E. Rudd
    Improved algorithms for searching restriction maps. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1991, v:7, n:4, pp:447-456 [Journal]
  28. Webb Miller, James Ostell, Kenneth E. Rudd
    An algorithm for searching restriction maps. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1990, v:6, n:3, pp:247-252 [Journal]
  29. Eugene W. Myers, Webb Miller
    Optimal alignments in linear space. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1988, v:4, n:1, pp:11-17 [Journal]
  30. Zheng Zhang 0004, Piotr Berman, Thomas Wiehe, Webb Miller
    Post-processing long pairwise alignments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:12, pp:1012-1019 [Journal]
  31. Vamsi Veeramachaneni, Piotr Berman, Webb Miller
    Aligning two fragmented sequences. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2003, v:127, n:1, pp:119-143 [Journal]
  32. Donald B. Johnson, Webb Miller, Brian Minnihan, Celia Wrathall
    Reducibility Among Floating-Point Graphs. [Citation Graph (0, 0)][DBLP]
    J. ACM, 1979, v:26, n:4, pp:739-760 [Journal]
  33. Webb Miller
    Toward Abstract Numerical Analysis. [Citation Graph (0, 0)][DBLP]
    J. ACM, 1973, v:20, n:3, pp:399-408 [Journal]
  34. Webb Miller
    Computer Search for Numerical Instability. [Citation Graph (0, 0)][DBLP]
    J. ACM, 1975, v:22, n:4, pp:512-521 [Journal]
  35. Kun-Mao Chao, Ross C. Hardison, Webb Miller
    Recent Developments in Linear-Space Alignment Methods: A Survey. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1994, v:1, n:4, pp:271-292 [Journal]
  36. Jia Li, Webb Miller
    Significance of Interspecies Matches when Evolutionary Rate Varies. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:10, n:3/4, pp:537-554 [Journal]
  37. Piotr Berman, Zheng Zhang 0004, Yuri I. Wolf, Eugene V. Koonin, Webb Miller
    Winnowing Sequences from a Database Search. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:1-2, pp:293-302 [Journal]
  38. Gene Myers, Sanford Selznick, Zheng Zhang 0004, Webb Miller
    Progressive Multiple Alignment with Constraints. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1996, v:3, n:4, pp:563-572 [Journal]
  39. Zheng Zhang 0004, William R. Pearson, Webb Miller
    Aligning a DNA Sequence with a Protein Sequence. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:3, pp:339-350 [Journal]
  40. Zheng Zhang 0004, Piotr Berman, Webb Miller
    Alignments without Low-Scoring Regions. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:2, pp:197-210 [Journal]
  41. Zheng Zhang 0004, Scott Schwartz, Lukas Wagner, Webb Miller
    A Greedy Algorithm for Aligning DNA Sequences. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:1-2, pp:203-214 [Journal]
  42. Webb Miller
    Recursive Function Theory and Numerical Analysis. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 1970, v:4, n:5, pp:465-472 [Journal]
  43. Liliana Florea, Michael McClelland, Cathy Riemer, Scott Schwartz, Webb Miller
    EnteriX 2003: visualization tools for genome alignments of Enterobacteriaceae. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3527-3532 [Journal]
  44. George P. Patrinos, Belinda Giardine, Cathy Riemer, Webb Miller, David H. K. Chui, Nicholas P. Anagnou, Henri Wajcman, Ross C. Hardison
    Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:537-541 [Journal]
  45. Scott Schwartz, Laura Elnitski, Mei Li, Matthew Weirauch, Cathy Riemer, Arian Smit, Eric D. Green, Ross C. Hardison, Webb Miller
    MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3518-3524 [Journal]
  46. Laura Elnitski, Belinda Giardine, Prachi Shah, Yi Zhang, Cathy Riemer, Matthew Weirauch, Richard Burhans, Webb Miller, Ross C. Hardison
    Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:466-470 [Journal]
  47. Webb Miller
    Computational Complexity and Numerical Stability. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1975, v:4, n:2, pp:97-107 [Journal]
  48. Webb Miller
    Graph Transformations for Roundoff Analysis. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1976, v:5, n:2, pp:204-216 [Journal]
  49. Webb Miller, Eugene W. Myers
    Side-effects in Automatic File Updating. [Citation Graph (0, 0)][DBLP]
    Softw., Pract. Exper., 1986, v:16, n:9, pp:809-820 [Journal]
  50. Webb Miller, Eugene W. Myers
    A Simple Row-replacement Method. [Citation Graph (0, 0)][DBLP]
    Softw., Pract. Exper., 1988, v:18, n:7, pp:597-611 [Journal]
  51. Webb Miller
    Software for Roundoff Analysis. [Citation Graph (0, 0)][DBLP]
    ACM Trans. Math. Softw., 1975, v:1, n:2, pp:108-128 [Journal]
  52. Webb Miller, David L. Spooner
    Software for Roundoff Analysis II. [Citation Graph (0, 0)][DBLP]
    ACM Trans. Math. Softw., 1978, v:4, n:4, pp:369-387 [Journal]
  53. Webb Miller, David L. Spooner
    Algorithm 532: Software for Roundoff Analysis [Z]. [Citation Graph (0, 0)][DBLP]
    ACM Trans. Math. Softw., 1978, v:4, n:4, pp:388-390 [Journal]
  54. Eugene W. Myers, Webb Miller
    Row Replacement Algorithms for Screen Editors. [Citation Graph (0, 0)][DBLP]
    ACM Trans. Program. Lang. Syst., 1989, v:11, n:1, pp:33-56 [Journal]
  55. Webb Miller, David L. Spooner
    Automatic Generation of Floating-Point Test Data. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Software Eng., 1976, v:2, n:3, pp:223-226 [Journal]
  56. Jian Ma, Aakrosh Ratan, Louxin Zhang, Webb Miller, David Haussler
    A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications. [Citation Graph (0, 0)][DBLP]
    RECOMB-CG, 2007, pp:122-135 [Conf]
  57. C. Thach Nguyen, Jian Shen, Minmei Hou, Li Sheng, Webb Miller, Louxin Zhang
    Approximating the spanning star forest problem and its applications to genomic sequence alignment. [Citation Graph (0, 0)][DBLP]
    SODA, 2007, pp:645-654 [Conf]

  58. Reconstructing the Evolutionary History of Complex Human Gene Clusters. [Citation Graph (, )][DBLP]


  59. Aligning Two Genomic Sequences That Contain Duplications. [Citation Graph (, )][DBLP]


  60. Whole-Genome Analysis of Gene Conversion Events. [Citation Graph (, )][DBLP]


  61. Inferring the Recent Duplication History of a Gene Cluster. [Citation Graph (, )][DBLP]


  62. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. [Citation Graph (, )][DBLP]


  63. Calling SNPs without a reference sequence. [Citation Graph (, )][DBLP]


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