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Douglas L. Brutlag: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Dalit Naor, Douglas L. Brutlag
    On Suboptimal Alignments of Biological Sequences. [Citation Graph (0, 0)][DBLP]
    CPM, 1993, pp:179-196 [Conf]
  2. Mike P. Liang, Douglas L. Brutlag, Russ B. Altman
    Automatic Construction of 3D Structural Motifs for Protein Function Prediction. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:613-614 [Conf]
  3. Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe
    Stochastic roadmap simulation for the study of ligand-protein interactions. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:18-26 [Conf]
  4. Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe
    Using robotics to fold proteins and dock ligands. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:74-74 [Conf]
  5. Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe
    Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. [Citation Graph (0, 0)][DBLP]
    ICRA, 2001, pp:932-939 [Conf]
  6. Thomas D. Wu, Douglas L. Brutlag
    Identification of Protein Motifs Using Conserved Amino Acid Properties and Partitioning Techniques. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:402-410 [Conf]
  7. Asa Ben-Hur, Douglas L. Brutlag
    Remote homology detection: a motif based approach. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2003, pp:26-33 [Conf]
  8. Thomas D. Wu, Douglas L. Brutlag
    Discovering Empirically Conserved Amino Acid Substitution Groups in Databases of Protein Families. [Citation Graph (0, 0)][DBLP]
    ISMB, 1996, pp:230-240 [Conf]
  9. Eugene Fratkin, Brian T. Naughton, Douglas L. Brutlag, Serafim Batzoglou
    MotifCut: regulatory motifs finding with maximum density subgraphs. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:156-157 [Conf]
  10. Tod M. Klinger, Douglas L. Brutlag
    Discovering Side-Chain Correlations In alpha-Helices. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:236-243 [Conf]
  11. Tod M. Klingler, Douglas L. Brutlag
    Detection of Correlations in tRNA Sequences with Structural Implications. [Citation Graph (0, 0)][DBLP]
    ISMB, 1993, pp:225-233 [Conf]
  12. Craig G. Nevill-Manning, Komal S. Sethi, Thomas D. Wu, Douglas L. Brutlag
    Enumerating and Ranking Discrete Motifs. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:202-209 [Conf]
  13. Amit Pal Singh, Douglas L. Brutlag
    Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:284-293 [Conf]
  14. Amit Pal Singh, Jean-Claude Latombe, Douglas L. Brutlag
    A Motion Planning Approach to Flexible Ligand Binding. [Citation Graph (0, 0)][DBLP]
    ISMB, 1999, pp:252-261 [Conf]
  15. Haidong Wang, Eran Segal, Asa Ben-Hur, Daphne Koller, Douglas L. Brutlag
    Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale. [Citation Graph (0, 0)][DBLP]
    NIPS, 2004, pp:- [Conf]
  16. Mike P. Liang, Douglas L. Brutlag, Russ B. Altman
    Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:204-215 [Conf]
  17. X. Liu, Douglas L. Brutlag, Jun S. Liu
    BioProspector: Discovering Conserved DNA Motifs in Upstream Regulatory Regions of Co-Expressed Genes. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:127-138 [Conf]
  18. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe
    Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2002, pp:12-21 [Conf]
  19. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe
    Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2006, pp:410-424 [Conf]
  20. Thomas D. Wu, Trevor Hastie, Scott C. Schmidler, Douglas L. Brutlag
    Regression analysis of multiple protein structures. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:276-284 [Conf]
  21. Steven P. Bennett, Craig G. Nevill-Manning, Douglas L. Brutlag
    3MOTIF: visualizing conserved protein sequence motifs in the protein structure database. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:4, pp:541-542 [Journal]
  22. Douglas L. Brutlag, Jean-Pierre Dautricourt, S. Maulik, J. Relph
    Improved sensitivity of biological sequence database searches. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1990, v:6, n:3, pp:237-245 [Journal]
  23. Douglas L. Brutlag, A. R. Galper, D. H. Millis
    Knowledge-based simulation of DNA metabolism: prediction of enzyme action. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1991, v:7, n:1, pp:9-19 [Journal]
  24. Jessica Ebert, Douglas L. Brutlag
    Development and validation of a consistency based multiple structure alignment algorithm. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:9, pp:1080-1087 [Journal]
  25. Thomas D. Wu, Craig G. Nevill-Manning, Douglas L. Brutlag
    Fast probabilistic analysis of sequence function using scoring matrices. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:3, pp:233-244 [Journal]
  26. Douglas L. Brutlag, Jean-Pierre Dautricourt, Ron Diaz, Jeff Fier, Bruce Moxon, Richard Stamm
    BLAZETM: An Implementation of the Smith-Waterman Sequence Comparison Algorithm on a Massively Parallel Computer. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 1993, v:17, n:2, pp:203-207 [Journal]
  27. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma
    Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:10, n:3/4, pp:257-281 [Journal]
  28. Dalit Naor, Douglas L. Brutlag
    On Near-Optimal Alignments of Biological Sequences. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1994, v:1, n:4, pp:349-0 [Journal]
  29. Scott C. Schmidler, Jun S. Liu, Douglas L. Brutlag
    Bayesian Segmentation of Protein Secondary Structure. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:1-2, pp:233-248 [Journal]
  30. Thomas D. Wu, Craig G. Nevill-Manning, Douglas L. Brutlag
    Minimal-Risk Scoring Matrices for Sequence Analysis. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1999, v:6, n:2, pp:219-236 [Journal]
  31. Thomas D. Wu, Scott C. Schmidler, Trevor Hastie, Douglas L. Brutlag
    Regression Analysis of Multiple Protein Structures. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:3, pp:585-596 [Journal]
  32. Edward J. Bertaccini, Jessica Shapiro, Douglas L. Brutlag, James R. Trudell
    Homology Modeling of a Human Glycine Alpha 1 Receptor Reveals a Plausible Anesthetic Binding Site. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2005, v:45, n:1, pp:128-135 [Journal]
  33. R. M. Abarbanel, Paul R. Wieneke, E. Mansfield, David A. Jaffe, Douglas L. Brutlag
    Rapid searches for complex patterns in biological molecules. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1984, v:12, n:1, pp:263-280 [Journal]
  34. R. Bach, Peter Friedland, Douglas L. Brutlag, Laurence H. Kedes
    MAXAMIZE. A DNA sequencing strategy advisor. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1982, v:10, n:1, pp:295-304 [Journal]
  35. Steven P. Bennett, Lin Lu, Douglas L. Brutlag
    3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3328-3332 [Journal]
  36. Douglas L. Brutlag, J. Clayton, Peter Friedland, Laurence H. Kedes
    SEQ: a nucleotide sequence analysis and recombination system. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1982, v:10, n:1, pp:279-294 [Journal]
  37. Peter Friedland, Laurence H. Kedes, Douglas L. Brutlag, Yumi Iwasaki, R. Bach
    GENESIS, a knowledge-based genetic engineering simulation system for representation of genetic data and experiment planning. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1982, v:10, n:1, pp:323-340 [Journal]
  38. Jimmy Y. Huang, Douglas L. Brutlag
    The EMOTIF database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:202-204 [Journal]
  39. Mike P. Liang, D. Rey Banatao, Teri E. Klein, Douglas L. Brutlag, Russ B. Altman
    WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3324-3327 [Journal]
  40. Yueyi Liu, Liping Wei, Serafim Batzoglou, Douglas L. Brutlag, Jun S. Liu, X. Shirley Liu
    A suite of web-based programs to search for transcriptional regulatory motifs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:204-207 [Journal]
  41. Dennis H. Smith, Douglas L. Brutlag, Peter Friedland, Laurence H. Kedes
    BIONET: national computer resource for molecular biology. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1986, v:14, n:1, pp:17-20 [Journal]
  42. Jessica Shapiro, Douglas L. Brutlag
    FoldMiner and LOCK 2: protein structure comparison and motif discovery on the web. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:536-541 [Journal]
  43. Qiaojuan Jane Su, Lin Lu, Serge Saxonov, Douglas L. Brutlag
    eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:178-182 [Journal]

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