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Publications of Author

1. Chris H. Q. Ding, Richard F. Meraz, Xiaofeng He, Stephen R. Holbrook
   Contraction Graphs for Representation and Analysis of RNA Secondary Structure. [Citation Graph (0, 0)][DBLP]
   CSB, 2004, pp:716-717 [Conf]
   
2. Richard F. Meraz, Xiaofeng He, Chris H. Q. Ding, Stephen R. Holbrook
   Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli. [Citation Graph (0, 0)][DBLP]
   CSB, 2004, pp:535-538 [Conf]
   
3. Chris H. Q. Ding, Ya Zhang, Tao Li, Stephen R. Holbrook
   Biclustering Protein Complex Interactions with a Biclique Finding Algorithm. [Citation Graph (0, 0)][DBLP]
   ICDM, 2006, pp:178-187 [Conf]
   
4. Inna Dubchak, Stephen R. Holbrook, Sung-Hou Kim
   Comparison of Two Variations of Neural Network Approaches to the Prediction of Protein Folding Pattern. [Citation Graph (0, 0)][DBLP]
   ISMB, 1993, pp:118-126 [Conf]
   
5. Yan Karklin, Richard F. Meraz, Stephen R. Holbrook
   Classification of Non-Coding RNA Using Graph Representations of Secondary Structure. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2005, pp:5-16 [Conf]
   
6. Hui Xiong, Xiaofeng He, Chris H. Q. Ding, Ya Zhang, Vipin Kumar, Stephen R. Holbrook
   Identification of Functional Modules in Protein Complexes via Hyperclique Pattern Discovery. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2005, pp:- [Conf]
   
7. Chunlin Wang, Chris H. Q. Ding, Richard F. Meraz, Stephen R. Holbrook
   PSoL: a positive sample only learning algorithm for finding non-coding RNA genes. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2006, v:22, n:21, pp:2590-2596 [Journal]
   
8. Ya Zhang, John-Marc Chandonia, Chris H. Q. Ding, Stephen R. Holbrook
   Comparative mapping of sequence-based and structure-based protein domains. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2005, v:6, n:, pp:77- [Journal]
   
9. Peter S. Klosterman, Makio Tamura, Stephen R. Holbrook, Steven E. Brenner
   SCOR: a Structural Classification of RNA database. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2002, v:30, n:1, pp:392-394 [Journal]
   
10. Makio Tamura, Donna K. Hendrix, Peter S. Klosterman, Nancy R. B. Schimmelman, Steven E. Brenner, Stephen R. Holbrook
    SCOR: Structural Classification of RNA, version 2.0. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:182-184 [Journal]
    
11. Liliana R. Stefan, Rui Zhang, Aaron G. Levitan, Donna K. Hendrix, Steven E. Brenner, Stephen R. Holbrook
    MeRNA: a database of metal ion binding sites in RNA structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:131-134 [Journal]
    
12. 
    Terminator Detection by Support Vector Machine Utilizing a Stochastic Context-Free Grammar. [Citation Graph (, )][DBLP]