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Burkhard Morgenstern: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Michael Brudno, Burkhard Morgenstern
    Fast and Sensitive Alignment of Large Genomic Sequences. [Citation Graph (0, 0)][DBLP]
    CSB, 2002, pp:138-0 [Conf]
  2. Michael Sammeth, Burkhard Morgenstern, Jens Stoye
    Divide-and-conquer multiple alignment with segment-based constraints. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:189-195 [Conf]
  3. Burkhard Morgenstern
    DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  4. Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler
    Multiple sequence alignment with user-defined constraints. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2004, pp:25-36 [Conf]
  5. Burkhard Morgenstern, Thomas Werner
    Dialign 1.0: Multiple alignment by Segment rather than by Position comparison. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:69-71 [Conf]
  6. Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern
    An exact solution for the Segment-to-Segment multiple sequence alignment problem. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  7. Oliver Rinner, Burkhard Morgenstern
    Gene prediction by comparative sequence analysis. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:131-134 [Conf]
  8. Burkhard Morgenstern, William R. Atchley, Klaus Hahn, Andreas W. M. Dress
    Segment-Based Scores for Pairwise and Multiple Sequence Alignments. [Citation Graph (0, 0)][DBLP]
    ISMB, 1998, pp:115-121 [Conf]
  9. Saïd Abdeddaïm, Burkhard Morgenstern
    Speeding Up the DIALIGN Multiple Alignment Program by Using the `Greedy Alignment of BIOlogical Sequences LIBrary' (GABIOS-LIB). [Citation Graph (0, 0)][DBLP]
    JOBIM, 2000, pp:1-11 [Conf]
  10. Burkhard Morgenstern
    A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences. [Citation Graph (0, 0)][DBLP]
    Appl. Math. Lett., 2002, v:15, n:1, pp:11-16 [Journal]
  11. Birgitta Geier, Gabi Kastenmüller, Matthias Fellenberg, Hans-Werner Mewes, Burkhard Morgenstern
    The HIB database of annotated UniGene clusters. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:6, pp:571-572 [Journal]
  12. Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert
    An exact solution for the segment-to-segment multiple sequence alignment problem. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:3, pp:203-210 [Journal]
  13. Burkhard Morgenstern
    A space-efficient algorithm for aligning large genomic sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:10, pp:948-949 [Journal]
  14. Burkhard Morgenstern
    DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:3, pp:211-218 [Journal]
  15. Burkhard Morgenstern, Kornelie Frech, Andreas W. M. Dress, Thomas Werner
    DIALIGN: finding local similarities by multiple sequence alignment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:3, pp:290-294 [Journal]
  16. Burkhard Morgenstern, Sachin Goel, Alexander Sczyrba, Andreas W. M. Dress
    AltAVisT: Comparing alternative multiple sequence alignments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:3, pp:425-426 [Journal]
  17. Burkhard Morgenstern, Oliver Rinner, Saïd Abdeddaïm, Dirk Haase, Klaus F. X. Mayer, Andreas W. M. Dress, Hans-Werner Mewes
    Exon discovery by genomic sequence alignment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:6, pp:777-787 [Journal]
  18. Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff
    Multiple sequence alignment with user-defined constraints at GOBICS. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1271-1273 [Journal]
  19. Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Michael Brudno, Serafim Batzoglou, Burkhard Morgenstern
    AGenDA: homology-based gene prediction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:12, pp:1575-1577 [Journal]
  20. Maike Tech, Nico Pfeifer, Burkhard Morgenstern, Peter Meinicke
    TICO: a tool for improving predictions of prokaryotic translation initiation sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:17, pp:3568-3569 [Journal]
  21. Michael Brudno, Michael Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern
    Fast and sensitive multiple alignment of large genomic sequences. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2003, v:4, n:, pp:66- [Journal]
  22. Peter Meinicke, Maike Tech, Burkhard Morgenstern, Rainer Merkl
    Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:169- [Journal]
  23. Martin Schmollinger, Kay Nieselt, Michael Kaufmann, Burkhard Morgenstern
    DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:128- [Journal]
  24. Mario Stanke, Oliver Schöffmann, Burkhard Morgenstern, Stephan Waack
    Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:62- [Journal]
  25. Amarendran R. Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann, Burkhard Morgenstern
    DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:66- [Journal]
  26. Oliver Rinner, Burkhard Morgenstern
    AGenDA: Gene prediction by comparative sequence analysis. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2002, v:2, n:, pp:18- [Journal]
  27. Michael Brudno, Rasmus Steinkamp, Burkhard Morgenstern
    The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:41-44 [Journal]
  28. Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil
    MIPS: a database for genomes and protein sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:31-34 [Journal]
  29. Burkhard Morgenstern
    DIALIGN: multiple DNA and protein sequence alignment at BiBiServ. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:33-36 [Journal]
  30. Mario Stanke, Rasmus Steinkamp, Stephan Waack, Burkhard Morgenstern
    AUGUSTUS: a web server for gene finding in eukaryotes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:309-312 [Journal]
  31. Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Burkhard Morgenstern
    AGenDA: gene prediction by cross-species sequence comparison. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:305-308 [Journal]
  32. Mario Stanke, Burkhard Morgenstern
    AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:465-467 [Journal]
  33. Dirk Pöhler, Nadine Werner, Rasmus Steinkamp, Burkhard Morgenstern
    Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:532-534 [Journal]
  34. Ming Zhang, Anne-Kathrin Schultz, Charles Calef, Carla Kuiken, Thomas Leitner, Bette Korber, Burkhard Morgenstern, Mario Stanke
    jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:463-465 [Journal]
  35. Mario Stanke, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, Burkhard Morgenstern
    AUGUSTUS: ab initio prediction of alternative transcripts. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:435-439 [Journal]
  36. Maike Tech, Burkhard Morgenstern, Peter Meinicke
    TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:588-590 [Journal]

  37. A min-cut algorithm for the consistency problem in multiple sequence alignment. [Citation Graph (, )][DBLP]


  38. HIV classification using the coalescent theory. [Citation Graph (, )][DBLP]


  39. Gene prediction in metagenomic fragments: A large scale machine learning approach. [Citation Graph (, )][DBLP]


  40. OrthoSelect: a protocol for selecting orthologous groups in phylogenomics. [Citation Graph (, )][DBLP]


  41. A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. [Citation Graph (, )][DBLP]


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