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Satoru Kuhara: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
    Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:104-113 [Conf]
  2. Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
    Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network. [Citation Graph (0, 0)][DBLP]
    CSB, 2002, pp:219-227 [Conf]
  3. Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
    A Simple Greedy Algorithm for Finding Functional Relations: Efficient Implementation and Average Case Anaylsis. [Citation Graph (0, 0)][DBLP]
    Discovery Science, 2000, pp:86-98 [Conf]
  4. Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano
    Learning Conformation Rules. [Citation Graph (0, 0)][DBLP]
    Discovery Science, 2001, pp:243-257 [Conf]
  5. Yoshinori Tamada, SunYong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
    Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:227-236 [Conf]
  6. Setsuo Arikawa, Satoru Kuhara, Satoru Miyano, Yasuhito Mukouchi, Ayumi Shinohara, Takeshi Shinohara
    A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns. [Citation Graph (0, 0)][DBLP]
    FGCS, 1992, pp:618-625 [Conf]
  7. Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Satoru Kuhara, Toshihisa Takagi
    Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins. [Citation Graph (0, 0)][DBLP]
    HICSS (5), 1994, pp:160-170 [Conf]
  8. Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa
    Development of an integrated Database for Genome Mapping and Nucleotide Sequences. [Citation Graph (0, 0)][DBLP]
    HICSS (5), 1994, pp:68-76 [Conf]
  9. Osamu Maruyama, Akiko Matsuda, Satoru Kuhara
    Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides. [Citation Graph (0, 0)][DBLP]
    International Conference on Computational Science (2), 2005, pp:911-918 [Conf]
  10. Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi
    Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:254-257 [Conf]
  11. Takayoshi Shoudai, Michael Lappe, Satoru Miyano, Ayumi Shinohara, Takeo Okazaki, Setsuo Arikawa, Tomoyuki Uchida, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara
    BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:359-358 [Conf]
  12. Osamu Maruyama, Satoru Kuhara, Hideo Bannai, Satoru Miyano, Yoshinori Tamada
    Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations. [Citation Graph (0, 0)][DBLP]
    JCIS, 2002, pp:1180-1185 [Conf]
  13. Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
    Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 1999, pp:17-28 [Conf]
  14. Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Kaori Yasuda, Cristin G. Print, Stephen D. Charnock-Jones, Deborah Sanders, Christopher J. Savoie, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
    Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide RNA Expression Profiles. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2006, pp:559-571 [Conf]
  15. Christopher J. Savoie, Nobuhiro Kamikawaji, Takehiko Sasazuki, Satoru Kuhara
    Use of Bonsai Decision Trees for the Identification of Potential MHC Class I Peptide Epitope Motifs. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 1999, pp:182-189 [Conf]
  16. Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
    Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:8-14 [Conf]
  17. Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
    Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions. [Citation Graph (0, 0)][DBLP]
    SODA, 1998, pp:695-702 [Conf]
  18. Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
    Inferring qualitative relations in genetic networks and metabolic pathways. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:8, pp:727-734 [Journal]
  19. H. Hirakawa, S. Muta, Satoru Kuhara
    The hydrophobic cores of proteins predicted by wavelet analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:2, pp:141-148 [Journal]
  20. Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi, Satoru Kuhara
    A deductive database system PACADE for analyzing 3-D and secondary structures of protein. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:3, pp:259-265 [Journal]
  21. Y. Tsukamoto, Kyoko Takiguchi, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara
    Application of a deductive database system to search for topological and similar three-dimensional structures in protein. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:2, pp:183-190 [Journal]
  22. Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano
    Fast algorithm for extracting multiple unordered short motifs using bit operations. [Citation Graph (0, 0)][DBLP]
    Inf. Sci., 2002, v:146, n:1-4, pp:115-126 [Journal]
  23. Yukihiro Maki, Yoriko Takahashi, Yuji Arikawa, Shoji Watanabe, Ken Aoshima, Yukihiro Eguchi, Takanori Ueda, Sachiyo Aburatani, Satoru Kuhara, Masahiro Okamoto
    An Integrated Comprehensive Workbench for Inferring Genetic Networks: voyagene. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2004, v:2, n:3, pp:533-550 [Journal]
  24. Satoshi Niijima, Satoru Kuhara
    Multiclass Molecular Cancer Classification by Kernel Subspace Methods with Effective Kernel Parameter Selection. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2005, v:3, n:5, pp:1071-1088 [Journal]
  25. Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
    Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2004, v:2, n:1, pp:77-98 [Journal]
  26. Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
    Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2003, v:1, n:2, pp:231-252 [Journal]
  27. Seiya Imoto, Christopher J. Savoie, Sachiyo Aburatani, SunYong Kim, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
    Use of Gene Networks for Identifying and Validating Drug Targets. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2003, v:1, n:3, pp:459-474 [Journal]
  28. Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
    Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:3-4, pp:331-343 [Journal]
  29. Satoru Kuhara, Fumihiro Matsuo, Shouichi Futamura, A. Fujita, Takeshi Shinohara, Toshihisa Takagi, Yasubumi Sakaki
    GENAS: a database system for nucleic acid sequence analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1984, v:12, n:1, pp:89-99 [Journal]
  30. Setsuo Arikawa, Satoru Miyano, Ayumi Shinohara, Satoru Kuhara, Yasuhito Mukouchi, Takeshi Shinohara
    A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns. [Citation Graph (0, 0)][DBLP]
    New Generation Comput., 1993, v:11, n:3, pp:361-375 [Journal]
  31. Satoshi Niijima, Satoru Kuhara
    Gene subset selection in kernel-induced feature space. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition Letters, 2006, v:27, n:16, pp:1884-1892 [Journal]
  32. Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
    Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2003, v:1, n:298, pp:235-251 [Journal]
  33. Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
    A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2003, v:292, n:2, pp:481-495 [Journal]
  34. Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto
    Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling. [Citation Graph (0, 0)][DBLP]
    Signal Processing, 2003, v:83, n:4, pp:777-788 [Journal]

  35. Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations. [Citation Graph (, )][DBLP]


  36. Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE. [Citation Graph (, )][DBLP]


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