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Publications of Author

1. Nobuyuki Kawagashira, Yasuhiro Ohtomo, Kazuo Murakami, Kenichi Matsubara, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Shoshi Kikuchi
   Wavelet Profiles: Their Application in Oryza sativa DNA Sequence Analysis. [Citation Graph (0, 0)][DBLP]
   CSB, 2002, pp:345-346 [Conf]
   
2. Shintaro Katayama, Mutsumi Kanamori, Yoshihide Hayashizaki
   Integrated analysis of the genome and the transcriptome by FANTOM. [Citation Graph (0, 0)][DBLP]
   Briefings in Bioinformatics, 2004, v:5, n:3, pp:249-258 [Journal]
   
3. Noriyuki Kitagawa, Takanori Washio, Shunichi Kosugi, Tomoya Yamashita, Kenji Higashi, Hiroshi Yanagawa, Kenichi Higo, Koji Satoh, Yasuhiro Ohtomo, Tomomi Sunako, Kazuo Murakami, Kenichi Matsubara, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Shoshi Kikuchi, Masaru Tomita
   Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa). [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2005, v:21, n:9, pp:1758-1763 [Journal]
   
4. Rintaro Saito, Harukazu Suzuki, Yoshihide Hayashizaki
   Construction of reliable protein-protein interaction networks with a new interaction generality measure. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2003, v:19, n:6, pp:756-763 [Journal]
   
5. Alistair R. R. Forrest, Darrin F. Taylor, J. Lynn Fink, M. Milena Gongora, Cameron Flegg, Rohan D. Teasdale, Harukazu Suzuki, Mutsumi Kanamori, Chikatoshi Kai, Yoshihide Hayashizaki, Sean M. Grimmond
   PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2006, v:7, n:, pp:82- [Journal]
   
6. Takeya Kasukawa, Hidemasa Bono, Yoshihide Hayashizaki, Yasushi Okazaki, Hideo Matsuda
   MaXML: mouse annotation XML. [Citation Graph (0, 0)][DBLP]
   In Silico Biology, 2003, v:4, n:, pp:- [Journal]
   
7. Yutaka Suzuki, Riu Yamashita, Matsuyuki Shirota, Yuta Sakakibara, Joe Chiba, Junko Mizushima-Sugano, Alexander E. Kel, Takahiro Arakawa, Piero Carninci, Jun Kawai, Yoshihide Hayashizaki, Toshihisa Takagi, Kenta Nakai, Sumio Sugano
   Large-scale collection and characterization of promoters of human and mouse genes. [Citation Graph (0, 0)][DBLP]
   In Silico Biology, 2004, v:4, n:, pp:- [Journal]
   
8. Hidemasa Bono, Takeya Kasukawa, Masaaki Furuno, Yoshihide Hayashizaki, Yasushi Okazaki
   FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2002, v:30, n:1, pp:116-118 [Journal]
   
9. Hidemasa Bono, Takeya Kasukawa, Yoshihide Hayashizaki, Yasushi Okazaki
   READ: RIKEN Expression Array Database. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2002, v:30, n:1, pp:211-213 [Journal]
   
10. Jean-Marie Buerstedde, Hiroshi Arakawa, Akira Watahiki, Piero Carninci, Yoshihide Hayashizaki, Bernhard Korn, Jiri Plachy
    The DT40 web site: sampling and connecting the genes of a B cell line. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:230-231 [Journal]
    
11. Itoshi Nikaido, Chika Saito, Akiko Wakamoto, Yasuhiro Tomaru, Takahiro Arakawa, Yoshihide Hayashizaki, Yasushi Okazaki
    EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:548-551 [Journal]
    
12. Ken C. Pang, Stuart Stephen, Pär G. Engström, Khairina Tajul-Arifin, Weisan Chen, Claes Wahlestedt, Boris Lenhard, Yoshihide Hayashizaki, John S. Mattick
    RNAdb - a comprehensive mammalian noncoding RNA database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:125-130 [Journal]
    
13. Hideya Kawaji, Takeya Kasukawa, Shiro Fukuda, Shintaro Katayama, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki
    CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:632-636 [Journal]
    
14. J. Lynn Fink, Rajith N. Aturaliya, Melissa J. Davis, Fasheng Zhang, Kelly Hanson, Melvena S. Teasdale, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Rohan D. Teasdale
    LOCATE: a mouse protein subcellular localization database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:213-217 [Journal]
    
15. 
    Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite. [Citation Graph (, )][DBLP]
    
    
16. 
    TagDust - a program to eliminate artifacts from next generation sequencing data. [Citation Graph (, )][DBLP]
    
    
17. 
    NGSView: an extensible open source editor for next-generation sequencing data. [Citation Graph (, )][DBLP]
    
    
18. 
    Large-scale clustering of CAGE tag expression data. [Citation Graph (, )][DBLP]
    
    
19. 
    Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes. [Citation Graph (, )][DBLP]
    
    
20. 
    Data-driven normalization strategies for high-throughput quantitative RT-PCR. [Citation Graph (, )][DBLP]
    
    
21. 
    SDRF2GRAPH - a visualization tool of a spreadsheet-based description of experimental processes. [Citation Graph (, )][DBLP]