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Publications of Author

1. Nathalie Pochet, Frizo A. L. Janssens, Frank De Smet, Kathleen Marchal, Ignace Vergote, Johan A. K. Suykens, Bart De Moor
   M@CBETH: Optimizing Clinical Microarray Classification. [Citation Graph (0, 0)][DBLP]
   CSB Workshops, 2005, pp:89-90 [Conf]
   
2. Tijl De Bie, Patrick Monsieurs, Kristof Engelen, Bart De Moor, Nello Cristianini, Kathleen Marchal
   Discovering Transcriptional Modules from Motif, Chip-Chip and Microarray Data. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2005, pp:- [Conf]
   
3. Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
   A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes. [Citation Graph (0, 0)][DBLP]
   RECOMB, 2001, pp:305-312 [Conf]
   
4. Kristof Engelen, Bert Coessens, Kathleen Marchal, Bart De Moor
   MARAN: Normalizing Micro-array Data. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2003, v:19, n:7, pp:893-894 [Journal]
   
5. Kristof Engelen, Bart Naudts, Bart De Moor, Kathleen Marchal
   A calibration method for estimating absolute expression levels from microarray data. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2006, v:22, n:10, pp:1251-1258 [Journal]
   
6. Nathalie Pochet, Frizo A. L. Janssens, Frank De Smet, Kathleen Marchal, Johan A. K. Suykens, Bart De Moor
   M@CBETH: a microarray classification benchmarking tool. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2005, v:21, n:14, pp:3185-3186 [Journal]
   
7. Frank De Smet, Janick Mathys, Kathleen Marchal, Gert Thijs, Bart De Moor, Yves Moreau
   Adaptive quality-based clustering of gene expression profiles. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2002, v:18, n:5, pp:735-746 [Journal]
   
8. Gert Thijs, Magali Lescot, Kathleen Marchal, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
   A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2001, v:17, n:12, pp:1113-1122 [Journal]
   
9. Gert Thijs, Yves Moreau, Frank De Smet, Janick Mathys, Magali Lescot, Stephane Rombauts, Pierre Rouzé, Bart De Moor, Kathleen Marchal
   INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2002, v:18, n:2, pp:331-332 [Journal]
   
10. Tim Van den Bulcke, Koen Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, Kathleen Marchal
    SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:43- [Journal]
    
11. Pieter Monsieurs, Gert Thijs, Abeer A. Fadda, Sigrid C. J. De Keersmaecker, Jozef Vanderleyden, Bart De Moor, Kathleen Marchal
    More robust detection of motifs in coexpressed genes by using phylogenetic information. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:160- [Journal]
    
12. Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau
    A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:9, n:2, pp:447-464 [Journal]
    
13. Bert Coessens, Gert Thijs, Stein Aerts, Kathleen Marchal, Frank De Smet, Kristof Engelen, Patrick Glenisson, Yves Moreau, Janick Mathys, Bart De Moor
    INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3468-3470 [Journal]
    
14. Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, Stephane Rombauts
    PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:325-327 [Journal]
    
15. 
    The Use of Mixed Models to Identify Differentially Expressed Genes when a Single Replicate per Biological Condition is Present. [Citation Graph (, )][DBLP]
    
    
16. 
    Exploring the Operational Characteristics of Inference Algorithms for Transcriptional Networks by Means of Synthetic Data. [Citation Graph (, )][DBLP]
    
    
17. 
    CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data. [Citation Graph (, )][DBLP]
    
    
18. 
    Query-driven module discovery in microarray data. [Citation Graph (, )][DBLP]
    
    
19. 
    Module networks revisited: computational assessment and prioritization of model predictions. [Citation Graph (, )][DBLP]
    
    
20. 
    ViTraM: visualization of transcriptional modules. [Citation Graph (, )][DBLP]
    
    
21. 
    Joint mapping of genes and conditions via multidimensional unfolding analysis. [Citation Graph (, )][DBLP]
    
    
22. 
    Evaluation of time profile reconstruction from complex two-color microarray designs. [Citation Graph (, )][DBLP]
    
    
23. 
    Validating module network learning algorithms using simulated data. [Citation Graph (, )][DBLP]
    
    
24. 
    ModuleDigger: an itemset mining framework for the detection of cis-regulatory modules. [Citation Graph (, )][DBLP]