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Alexandros Stamatakis: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier, Marty J. Wolf
    AxML: A Fast Program for Sequential and Parallel Phylogenetic Tree Calculations Based on the Maximum Likelihood Method. [Citation Graph (0, 0)][DBLP]
    CSB, 2002, pp:21-0 [Conf]
  2. Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier
    Parallel Inference of a 10.000-Taxon Phylogeny with Maximum Likelihood. [Citation Graph (0, 0)][DBLP]
    Euro-Par, 2004, pp:997-1004 [Conf]
  3. Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan, Luay Nakhleh
    Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood. [Citation Graph (0, 0)][DBLP]
    HPCC, 2005, pp:776-785 [Conf]
  4. Alexandros Stamatakis
    An Efficient Program for Phylogenetic Inference Using Simulated Annealing. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2005, pp:- [Conf]
  5. Alexandros Stamatakis, Thomas Ludwig 0002
    Phylogenetic Tree Inference on PC Architectures with AxML/PAxML. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2003, pp:157- [Conf]
  6. Alexandros Stamatakis, Harald Meier, Thomas Ludwig 0002
    New Fast and Accurate Heuristics for Inference of Large Phylogenetic Trees. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2004, pp:- [Conf]
  7. Alexandros Stamatakis
    Phylogenetic models of rate heterogeneity: a high performance computing perspective. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2006, pp:- [Conf]
  8. Adam Arvelakis, Martin Reczko, Alexandros Stamatakis, Alkiviadis Symeonidis, Ioannis G. Tollis
    Using Treemaps to Visualize Phylogenetic Trees. [Citation Graph (0, 0)][DBLP]
    ISBMDA, 2005, pp:283-293 [Conf]
  9. Thomas Ludwig 0002, Markus Lindermeier, Alexandros Stamatakis, Günther Rackl
    Tool Environments in CORBA-Based Medical High Performance Computing. [Citation Graph (0, 0)][DBLP]
    PaCT, 2001, pp:447-455 [Conf]
  10. Alexandros Stamatakis, Markus Lindermeier, Michael Ott, Thomas Ludwig 0002, Harald Meier
    DAxML: A Program for Distributed Computation of Phylogenetic Trees Based on Load Managed CORBA. [Citation Graph (0, 0)][DBLP]
    PaCT, 2003, pp:538-548 [Conf]
  11. Alexandros Stamatakis, Michael Ott, Thomas Ludwig 0002
    RAxML-OMP: An Efficient Program for Phylogenetic Inference on SMPs. [Citation Graph (0, 0)][DBLP]
    PaCT, 2005, pp:288-302 [Conf]
  12. Maria Charalambous, Pedro Trancoso, Alexandros Stamatakis
    Initial Experiences Porting a Bioinformatics Application to a Graphics Processor. [Citation Graph (0, 0)][DBLP]
    Panhellenic Conference on Informatics, 2005, pp:415-425 [Conf]
  13. Filip Blagojevic, Dimitrios S. Nikolopoulos, Alexandros Stamatakis, Christos D. Antonopoulos
    Dynamic multigrain parallelization on the cell broadband engine. [Citation Graph (0, 0)][DBLP]
    PPOPP, 2007, pp:90-100 [Conf]
  14. Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier
    A fast program for maximum likelihood-based inference of large phylogenetic trees. [Citation Graph (0, 0)][DBLP]
    SAC, 2004, pp:197-201 [Conf]
  15. Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier, Marty J. Wolf
    Accelerating parallel maximum likelihood-based phylogenetic tree calculations using subtree equality vectors. [Citation Graph (0, 0)][DBLP]
    SC, 2002, pp:1-16 [Conf]
  16. David A. Bader, Usman Roshan, Alexandros Stamatakis
    Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions. [Citation Graph (0, 0)][DBLP]
    Advances in Computers, 2006, v:68, n:, pp:128-179 [Journal]
  17. Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier
    RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:4, pp:456-463 [Journal]
  18. Alexandros Stamatakis
    RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:21, pp:2688-2690 [Journal]
  19. Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier
    The AxML program family for maximum likelihood-based phylogenetic tree inference. [Citation Graph (0, 0)][DBLP]
    Concurrency - Practice and Experience, 2004, v:16, n:9, pp:975-988 [Journal]
  20. Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier
    RAxML-II: a program for sequential, parallel and distributed inference of large phylogenetic trees. [Citation Graph (0, 0)][DBLP]
    Concurrency and Computation: Practice and Experience, 2005, v:17, n:14, pp:1705-1723 [Journal]
  21. Thomas Ludwig 0002, Markus Lindermeier, Alexandros Stamatakis, Günther Rackl
    Tool environments in CORBA-based medical high-performance computing. [Citation Graph (0, 0)][DBLP]
    Future Generation Comp. Syst., 2002, v:18, n:6, pp:841-847 [Journal]
  22. Alexandros Stamatakis, Markus Lindermeier, Michael Ott, Thomas Ludwig 0002, Harald Meier
    DRAxML at home: a distributed program for computation of large phylogenetic trees. [Citation Graph (0, 0)][DBLP]
    Future Generation Comp. Syst., 2005, v:21, n:4, pp:725-730 [Journal]
  23. Günther Rackl, Thomas Ludwig 0002, Markus Lindermeier, Alexandros Stamatakis
    Efficiently building on-line tools for distributed heterogeneous environments. [Citation Graph (0, 0)][DBLP]
    Scientific Programming, 2002, v:10, n:1, pp:67-74 [Journal]
  24. Filip Blagojevic, Alexandros Stamatakis, Christos D. Antonopoulos, Dimitrios S. Nikolopoulos
    RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2007, pp:1-10 [Conf]
  25. Alexandros Stamatakis, Filip Blagojevic, Dimitrios S. Nikolopoulos, Christos D. Antonopoulos
    Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell. [Citation Graph (0, 0)][DBLP]
    VLSI Signal Processing, 2007, v:48, n:3, pp:271-286 [Journal]

  26. Efficient PC-FPGA Communication over Gigabit Ethernet. [Citation Graph (, )][DBLP]


  27. A reconfigurable architecture for the Phylogenetic Likelihood Function. [Citation Graph (, )][DBLP]


  28. Fine-grain Parallelism Using Multi-core, Cell/BE, and GPU Systems: Accelerating the Phylogenetic Likelihood Function. [Citation Graph (, )][DBLP]


  29. Load Balance in the Phylogenetic Likelihood Kernel. [Citation Graph (, )][DBLP]


  30. Exploring FPGAs for accelerating the phylogenetic likelihood function. [Citation Graph (, )][DBLP]


  31. Accuracy and Performance of Single versus Double Precision Arithmetics for Maximum Likelihood Phylogeny Reconstruction. [Citation Graph (, )][DBLP]


  32. How Many Bootstrap Replicates Are Necessary?. [Citation Graph (, )][DBLP]


  33. Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L. [Citation Graph (, )][DBLP]


  34. Exploiting Fine-Grained Parallelism in the Phylogenetic Likelihood Function with MPI, Pthreads, and OpenMP: A Performance Study. [Citation Graph (, )][DBLP]


  35. Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data. [Citation Graph (, )][DBLP]


  36. AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa. [Citation Graph (, )][DBLP]


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