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Hongyu Zhao: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Weichuan Yu, Xiaoye Li, Hongyu Zhao
    Aligning Peaks Across Multiple Mass Spectrometry Data Sets Using A Scale-Space Based Approach. [Citation Graph (0, 0)][DBLP]
    CSB Workshops, 2005, pp:126-127 [Conf]
  2. Shuanglin Zhang, Kui Zhang, Jinming Li, Hongyu Zhao
    On a Family-Based Haplotype Pattern Mining Method for Linkage Disequilibrium Mapping. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:100-111 [Conf]
  3. Liang Chen, Hongyu Zhao
    Negative correlation between compositional symmetries and local recombination rates. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:21, pp:3951-3958 [Journal]
  4. Zhong Guan, Hongyu Zhao
    A semiparametric approach for marker gene selection based on gene expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:4, pp:529-536 [Journal]
  5. Matthew Holford, Naixin Li, Prakash M. Nadkarni, Hongyu Zhao
    VitaPad: visualization tools for the analysis of pathway data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:8, pp:1596-1602 [Journal]
  6. Tao Huang, Baolin Wu, Paul Lizardi, Hongyu Zhao
    Detection of DNA copy number alterations using penalized least squares regression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:20, pp:3811-3817 [Journal]
  7. Yinglei Lai, Baolin Wu, Liang Chen, Hongyu Zhao
    A statistical method for identifying differential gene-gene co-expression patterns. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3146-3155 [Journal]
  8. Yin Liu, Nianjun Liu, Hongyu Zhao
    Inferring protein-protein interactions through high-throughput interaction data from diverse organisms. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:15, pp:3279-3285 [Journal]
  9. Herbert Pang, Aiping Lin, Matthew Holford, Bradley E. Enerson, Bin Lu, Michael P. Lawton, Eugenia Floyd, Hongyu Zhao
    Pathway analysis using random forests classification and regression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:16, pp:2028-2036 [Journal]
  10. Baolin Wu, Tom Abbott, David Fishman, Walter McMurray, Gil Mor, Kathryn Stone, David Ward, Kenneth Williams, Hongyu Zhao
    Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:13, pp:1636-1643 [Journal]
  11. Kui Zhang, Fengzhu Sun, Hongyu Zhao
    HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:1, pp:90-103 [Journal]
  12. Nan Lin, Baolin Wu, Ronald Jansen, Mark Gerstein, Hongyu Zhao
    Information assessment on predicting protein-protein interactions. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:154- [Journal]
  13. Nan Lin, Hongyu Zhao
    Are scale-free networks robust to measurement errors? [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:119- [Journal]
  14. Yin Liu, Hongyu Zhao
    A computational approach for ordering signal transduction pathway components from genomics and proteomics Data. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:158- [Journal]
  15. Michael V. Osier, Hongyu Zhao, Kei-Hoi Cheung
    Handling multiple testing while interpreting microarrays with the Gene Ontology Database. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:124- [Journal]
  16. Deyun Pan, Ning Sun, Kei-Hoi Cheung, Zhong Guan, Ligeng Ma, Matthew Holford, Xingwang Deng, Hongyu Zhao
    PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2003, v:4, n:, pp:56- [Journal]
  17. Yinglei Lai, Hongyu Zhao
    A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data. [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2005, v:29, n:1, pp:47-54 [Journal]
  18. Yinglei Lai, Hongyu Zhao
    Erratum to "A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data": [Comput. Biol. Chem. 29(2005) 47-54] [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2005, v:29, n:3, pp:258- [Journal]
  19. Weichuan Yu, Baolin Wu, Ning Lin, Kathy Stone, Kenneth Williams, Hongyu Zhao
    Detecting and aligning peaks in mass spectrometry data with applications to MALDI. [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2006, v:30, n:1, pp:27-38 [Journal]
  20. Hongyu Zhao, Feng Liang
    On Relationship Inference Using Gamete Identity by Descent Data. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2001, v:8, n:2, pp:191-200 [Journal]
  21. Liang Chen, Hongyu Zhao
    Integrating mRNA Decay Information into Co-Regulation Study. [Citation Graph (0, 0)][DBLP]
    J. Comput. Sci. Technol., 2005, v:20, n:4, pp:434-438 [Journal]
  22. Wenming Zhao, Jing Wang, Ximiao He, Xiaobing Huang, Yongzhi Jiao, Mingtao Dai, Shulin Wei, Jian Fu, Ye Chen, Xiaoyu Ren, Yong Zhang, Peixiang Ni, Jianguo Zhang, Songgang Li, Jian Wang, Gane Ka-Shu Wong, Hongyu Zhao, Jun Yu, Huanming Yang, Jun Wang
    BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:377-382 [Journal]
  23. Weichuan Yu, Xiaoye Li, Junfeng Liu, Baolin Wu, Kenneth R. Williams, Hongyu Zhao
    Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:3, pp:208-219 [Journal]

  24. A Medical Tracking System for Contrast Media. [Citation Graph (, )][DBLP]


  25. Automatic Labeling System of Words in Text Materials for College English Tests. [Citation Graph (, )][DBLP]


  26. Statistical methods to infer cooperative binding among transcription factors in Saccharomyces cerevisiae. [Citation Graph (, )][DBLP]


  27. Estimating dynamic models for gene regulation networks. [Citation Graph (, )][DBLP]


  28. Considering dependence among genes and markers for false discovery control in eQTL mapping. [Citation Graph (, )][DBLP]


  29. NTAP: for NimbleGen tiling array ChIP-chip data analysis. [Citation Graph (, )][DBLP]


  30. Pathway analysis using random forests with bivariate node-split for survival outcomes. [Citation Graph (, )][DBLP]


  31. Building pathway clusters from Random Forests classification using class votes. [Citation Graph (, )][DBLP]


  32. Effect of false positive and false negative rates on inference of binding target conservation across different conditions and species from ChIP-chip data. [Citation Graph (, )][DBLP]


  33. Genotyping and inflated type I error rate in genome-wide association case/control studies. [Citation Graph (, )][DBLP]


  34. PSMIX: an R package for population structure inference via maximum likelihood method. [Citation Graph (, )][DBLP]


  35. A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry. [Citation Graph (, )][DBLP]


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