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Serafim Batzoglou: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Chuong B. Do, Michael Brudno, Serafim Batzoglou
    PROBCONS: Probabilistic Consistency-Based Multiple Alignment of Amino Acid Sequences. [Citation Graph (0, 0)][DBLP]
    AAAI, 2004, pp:703-708 [Conf]
  2. Serafim Batzoglou, Sorin Istrail
    Physical Mapping with Repeated Probes: The Hypergraph Superstring Problem. [Citation Graph (0, 0)][DBLP]
    CPM, 1999, pp:66-77 [Conf]
  3. Eugene Davydov, Serafim Batzoglou
    A Computational Model for RNA Multiple Structural Alignment.. [Citation Graph (0, 0)][DBLP]
    CPM, 2004, pp:254-269 [Conf]
  4. Aswath Manohar, Serafim Batzoglou
    TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree. [Citation Graph (0, 0)][DBLP]
    CSB, 2005, pp:111-119 [Conf]
  5. Michael Brudno, Sanket Malde, Alexander Poliakov, Chuong B. Do, Olivier Couronne, Inna Dubchak, Serafim Batzoglou
    Glocal alignment: finding rearrangements during alignment. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2003, pp:54-62 [Conf]
  6. Chuong B. Do, Daniel A. Woods, Serafim Batzoglou
    CONTRAfold: RNA secondary structure prediction without physics-based models. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:90-98 [Conf]
  7. Eugene Fratkin, Brian T. Naughton, Douglas L. Brutlag, Serafim Batzoglou
    MotifCut: regulatory motifs finding with maximum density subgraphs. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:156-157 [Conf]
  8. Su-In Lee, Serafim Batzoglou
    ICA-based Clustering of Genes from Microarray Expression Data. [Citation Graph (0, 0)][DBLP]
    NIPS, 2003, pp:- [Conf]
  9. Serafim Batzoglou, Lior Pachter
    Gene Regulation - Session Introduction. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:3-4 [Conf]
  10. Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena
    Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:1-2 [Conf]
  11. Serafim Batzoglou, Bonnie Berger, Jill P. Mesirov, Eric S. Lander
    Sequencing a genome by walking with clone-end sequences: a mathematical analysis (abstract). [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:45- [Conf]
  12. Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander
    Human and mouse gene structure: comparative analysis and application to exon prediction. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:46-53 [Conf]
  13. Chuong B. Do, Samuel S. Gross, Serafim Batzoglou
    CONTRAlign: Discriminative Training for Protein Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2006, pp:160-174 [Conf]
  14. Lior Pachter, Serafim Batzoglou, Valentin I. Spitkovsky, William S. Beebee, Eric S. Lander, Bonnie Berger, Daniel J. Kleitman
    A dictionary based approach for gene annotation. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1999, pp:285-294 [Conf]
  15. Balaji S. Srinivasan, Antal F. Novak, Jason A. Flannick, Serafim Batzoglou, Harley H. McAdams
    Integrated Protein Interaction Networks for 11 Microbes. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2006, pp:1-14 [Conf]
  16. Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena
    Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. [Citation Graph (0, 0)][DBLP]
    SODA, 1997, pp:390-399 [Conf]
  17. Mukund Sundararajan, Michael Brudno, Kerrin Small, Arend Sidow, Serafim Batzoglou
    Chaining Algorithms for Alignment of Draft Sequence. [Citation Graph (0, 0)][DBLP]
    WABI, 2004, pp:326-337 [Conf]
  18. Serafim Batzoglou
    The many faces of sequence alignment. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2005, v:6, n:1, pp:6-22 [Journal]
  19. Nameeta Shah, Olivier Couronne, Len A. Pennacchio, Michael Brudno, Serafim Batzoglou, E. Wes Bethel, Edward M. Rubin, Bernd Hamann, Inna Dubchak
    Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:5, pp:636-643 [Journal]
  20. Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, Michael Brudno, Serafim Batzoglou, Burkhard Morgenstern
    AGenDA: homology-based gene prediction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:12, pp:1575-1577 [Journal]
  21. Michael Brudno, Michael Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern
    Fast and sensitive multiple alignment of large genomic sequences. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2003, v:4, n:, pp:66- [Journal]
  22. Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena
    Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:3, pp:275-296 [Journal]
  23. Lior Pachter, Serafim Batzoglou, Valentin I. Spitkovsky, E. Banks, Eric S. Lander, Daniel J. Kleitman, Bonnie Berger
    A Dictionary-Based Approach for Gene Annotation. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1999, v:6, n:3/4, pp:- [Journal]
  24. Yueyi Liu, Liping Wei, Serafim Batzoglou, Douglas L. Brutlag, Jun S. Liu, X. Shirley Liu
    A suite of web-based programs to search for transcriptional regulatory motifs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:204-207 [Journal]
  25. Eugene Davydov, Serafim Batzoglou
    A computational model for RNA multiple structural alignment. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2006, v:368, n:3, pp:205-216 [Journal]
  26. Samuel S. Gross, Olga Russakovsky, Chuong B. Do, Serafim Batzoglou
    Training Conditional Random Fields for Maximum Labelwise Accuracy. [Citation Graph (0, 0)][DBLP]
    NIPS, 2006, pp:529-536 [Conf]

  27. A max-margin model for efficient simultaneous alignment and folding of RNA sequences. [Citation Graph (, )][DBLP]


  28. Effects of Genetic Divergence in Identifying Ancestral Origin Using HAPAA. [Citation Graph (, )][DBLP]


  29. Automatic Parameter Learning for Multiple Network Alignment. [Citation Graph (, )][DBLP]


  30. Current progress in network research: toward reference networks for key model organisms. [Citation Graph (, )][DBLP]


  31. A Classifier-based approach to identify genetic similarities between diseases. [Citation Graph (, )][DBLP]


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