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Ron Shamir: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Martin Charles Golumbic, Ron Shamir
    Algorithms and Complexity for Reasoning about Time. [Citation Graph (0, 0)][DBLP]
    AAAI, 1992, pp:741-747 [Conf]
  2. Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan
    On the Complexity of Positional Sequencing by Hybridization. [Citation Graph (0, 0)][DBLP]
    CPM, 1999, pp:88-100 [Conf]
  3. Tamar Barzuza, Jacques S. Beckmann, Ron Shamir, Itsik Pe'er
    Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs. [Citation Graph (0, 0)][DBLP]
    CPM, 2004, pp:14-31 [Conf]
  4. Michal Ozery-Flato, Ron Shamir
    An O(n3/2sqrt(log n)) Algorithm for Sorting by Reciprocal Translocations. [Citation Graph (0, 0)][DBLP]
    CPM, 2006, pp:258-269 [Conf]
  5. Itsik Pe'er, Ron Shamir, Roded Sharan
    Incomplete Directed Perfect Phylogeny. [Citation Graph (0, 0)][DBLP]
    CPM, 2000, pp:143-153 [Conf]
  6. Ron Shamir
    Computational Dissection of Regulatory Networks Using Diverse High-Throughput Data. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:2-3 [Conf]
  7. Pavol Hell, Ron Shamir, Roded Sharan
    A Fully Dynamic Algorithm for Recognizing and Representing Proper Interval Graphs. [Citation Graph (0, 0)][DBLP]
    ESA, 1999, pp:527-539 [Conf]
  8. Itsik Pe'er, Ron Shamir
    Interval Graphs with Side (and Size) Constraints. [Citation Graph (0, 0)][DBLP]
    ESA, 1995, pp:142-154 [Conf]
  9. Ron Shamir
    Some Computational Challenges in Today's Bio-medicine. [Citation Graph (0, 0)][DBLP]
    ESA, 2006, pp:3- [Conf]
  10. Haim Kaplan, Ron Shamir, Robert Endre Tarjan
    Tractability of parameterized completion problems on chordal and interval graphs: Minimum Fill-in and Physical Mapping [Citation Graph (0, 0)][DBLP]
    FOCS, 1994, pp:780-791 [Conf]
  11. Eran Halperin, Gad Kimmel, Ron Shamir
    Tag SNP selection in genotype data for maximizing SNP prediction accuracy. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:195-203 [Conf]
  12. Irit Gat-Viks, Ron Shamir
    Chain functions and scoring functions in genetic networks. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2003, pp:108-117 [Conf]
  13. Richard M. Karp, Itsik Pe'er, Ron Shamir
    An Algorithm Combining Discrete and Continuous Methods for Optical Mapping. [Citation Graph (0, 0)][DBLP]
    ISMB, 1999, pp:159-168 [Conf]
  14. Chaim Linhart, Ron Shamir
    The degenerate primer design problem. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:172-181 [Conf]
  15. Itsik Pe'er, Ron Shamir
    Spectrum Alignment: Efficient Resequencing by Hybridization. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:260-268 [Conf]
  16. Roded Sharan, Ron Shamir
    Center CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:307-316 [Conf]
  17. Amos Tanay, Ron Shamir
    Computational expansion of genetic networks. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:270-278 [Conf]
  18. Amos Tanay, Roded Sharan, Ron Shamir
    Discovering statistically significant biclusters in gene expression data. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:136-144 [Conf]
  19. Martin Charles Golumbic, Ron Shamir
    Interval Graphs, Interval Orders and the Consistency of Temporal Events. [Citation Graph (0, 0)][DBLP]
    ISTCS, 1992, pp:32-42 [Conf]
  20. Ron Shamir, Dekel Tsur
    Faster subtree isomorphism. [Citation Graph (0, 0)][DBLP]
    ISTCS, 1997, pp:126-131 [Conf]
  21. Haim Kaplan, Ron Shamir
    Physical Maps and Interval Sandwich Problems: Bounded Degrees Help. [Citation Graph (0, 0)][DBLP]
    ISTCS, 1996, pp:195-201 [Conf]
  22. Irit Gat-Viks, Ron Shamir, Richard M. Karp, Roded Sharan
    Reconstructing Chain Functions in Genetic Networks. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2004, pp:498-509 [Conf]
  23. Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir
    The restriction scaffold problem. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2002, pp:58-66 [Conf]
  24. Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir
    Handling long targets and errors in sequencing by hybridization. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2002, pp:176-185 [Conf]
  25. Erez Hartuv, Armin O. Schmitt, Jörg Lange, Sebastian Meier-Ewert, Hans Lehrach, Ron Shamir
    An algorithm for clustering cDNAs for gene expression analysis. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1999, pp:188-197 [Conf]
  26. Haim Kaplan, Ron Shamir, Robert Endre Tarjan
    Faster and simpler algorithm for sorting signed permutations by reversals. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:163- [Conf]
  27. Richard M. Karp, Ron Shamir
    Algorithms for optical mapping. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:117-124 [Conf]
  28. Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Shamir
    The Factor Graph Network Model for Biological Systems. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2005, pp:31-47 [Conf]
  29. Irit Gat-Viks, Amos Tanay, Ron Shamir
    Modeling and Analysis of Heterogeneous Regulation in Biological Networks. [Citation Graph (0, 0)][DBLP]
    Regulatory Genomics, 2004, pp:98-113 [Conf]
  30. Gad Kimmel, Ron Shamir
    Maximum likelihood resolution of multi-block genotypes. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:2-9 [Conf]
  31. Guy Mayraz, Ron Shamir
    Construction of physical maps from oligonucleotide fingerprints data. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1999, pp:268-277 [Conf]
  32. Michal Ozery-Flato, Ron Shamir
    Sorting by Translocations Via Reversals Theory. [Citation Graph (0, 0)][DBLP]
    Comparative Genomics, 2006, pp:87-98 [Conf]
  33. Ron Shamir, Dekel Tsur
    Large scale sequencing by hybridization. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2001, pp:269-277 [Conf]
  34. Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp
    Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:282-289 [Conf]
  35. Amos Tanay, Ron Shamir
    Modeling transcription programs: inferring binding site activity and dose-response model optimization. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:301-310 [Conf]
  36. Michal Ozery-Flato, Ron Shamir
    Rearrangements in Genomes with Centromeres Part I: Translocations. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2007, pp:339-353 [Conf]
  37. Haim Kaplan, Ron Shamir, Robert Endre Tarjan
    Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals. [Citation Graph (0, 0)][DBLP]
    SODA, 1997, pp:344-351 [Conf]
  38. Ron Shamir, Brenda L. Dietrich
    Characterization and Algorithms for Greedily Solvable Transportation Problems. [Citation Graph (0, 0)][DBLP]
    SODA, 1990, pp:358-366 [Conf]
  39. Ron Shamir, Dekel Tsur
    The Maximum Subforest Problem: Approximation and Exact Algorithms (Extended Abstract). [Citation Graph (0, 0)][DBLP]
    SODA, 1998, pp:394-399 [Conf]
  40. Assaf Natanzon, Ron Shamir, Roded Sharan
    A Polynomial Approximation Algorithm for the Minimum Fill-In Problem. [Citation Graph (0, 0)][DBLP]
    STOC, 1998, pp:41-47 [Conf]
  41. Itsik Pe'er, Ron Shamir, Roded Sharan
    On the Generality of Phylogenies from Incomplete Directed Characters. [Citation Graph (0, 0)][DBLP]
    SWAT, 2002, pp:358-367 [Conf]
  42. Ron Shamir, Dekel Tsur
    Improved Algorithms for the Random Cluster Graph Model. [Citation Graph (0, 0)][DBLP]
    SWAT, 2002, pp:230-239 [Conf]
  43. Gad Kimmel, Roded Sharan, Ron Shamir
    Identifying Blocks and Sub-populations in Noisy SNP Data. [Citation Graph (0, 0)][DBLP]
    WABI, 2003, pp:303-319 [Conf]
  44. Tal Pupko, Roded Sharan, Masami Hasegawa, Ron Shamir, Dan Graur
    A Chemical-Distance-Based Test for Positive Darwinian Selection. [Citation Graph (0, 0)][DBLP]
    WABI, 2001, pp:142-155 [Conf]
  45. Martin Charles Golumbic, Haim Kaplan, Ron Shamir
    Algorithms and Complexity of Sandwich Problems in Graphs (Extended Abstract). [Citation Graph (0, 0)][DBLP]
    WG, 1993, pp:57-69 [Conf]
  46. Assaf Natanzon, Ron Shamir, Roded Sharan
    Complexity Classification of Some Edge Modification Problems. [Citation Graph (0, 0)][DBLP]
    WG, 1999, pp:65-77 [Conf]
  47. Ron Shamir, Roded Sharan, Dekel Tsur
    Cluster Graph Modification Problems. [Citation Graph (0, 0)][DBLP]
    WG, 2002, pp:379-390 [Conf]
  48. Haim Kaplan, Ron Shamir
    Bounded Degree Interval Sandwich Problems. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 1999, v:24, n:2, pp:96-104 [Journal]
  49. Yaron Pinto, Ron Shamir
    Efficient Algorithms for Minimum-Cost Flow Problems with Piecewise-Linear Convex Costs. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 1994, v:11, n:3, pp:256-276 [Journal]
  50. Gideon Dror, Rotem Sorek, Ron Shamir
    Accurate identification of alternatively spliced exons using support vector machine. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:897-901 [Journal]
  51. Irit Gat-Viks, Roded Sharan, Ron Shamir
    Scoring clustering solutions by their biological relevance. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:18, pp:2381-2389 [Journal]
  52. Nir Orlev, Ron Shamir, Yosef Shiloh
    PIVOT: Protein Interacions VisualizatiOn Tool. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:3, pp:424-425 [Journal]
  53. Roded Sharan, Adi Maron-Katz, Ron Shamir
    CLICK and EXPANDER: a system for clustering and visualizing gene expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:14, pp:1787-1799 [Journal]
  54. Ron Shamir, Adi Maron-Katz, Amos Tanay, Chaim Linhart, Israel Steinfeld, Roded Sharan, Yosef Shiloh, Ran Elkon
    EXPANDER - an integrative program suite for microarray data analysis. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:232- [Journal]
  55. Ilan Adler, Alan J. Hoffman, Ron Shamir
    Monge and Feasibility Sequences in General Flow Problems. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1993, v:44, n:1-3, pp:21-38 [Journal]
  56. Endre Boros, Peter L. Hammer, Mark E. Hartmann, Ron Shamir
    Balancing Problems in Acyclic Networks. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1994, v:49, n:1-3, pp:77-93 [Journal]
  57. Ryan B. Hayward, Ron Shamir
    A note on tolerance graph recognition. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2004, v:143, n:1-3, pp:307-311 [Journal]
  58. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
    Foreword. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2000, v:104, n:1-3, pp:1-2 [Journal]
  59. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
    Foreword. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1998, v:88, n:1-3, pp:3-6 [Journal]
  60. Assaf Natanzon, Ron Shamir, Roded Sharan
    Complexity classification of some edge modification problems. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2001, v:113, n:1, pp:109-128 [Journal]
  61. Ron Shamir, Roded Sharan
    A fully dynamic algorithm for modular decomposition and recognition of cographs. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2004, v:136, n:2-3, pp:329-340 [Journal]
  62. Ron Shamir, Roded Sharan, Dekel Tsur
    Cluster graph modification problems. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2004, v:144, n:1-2, pp:173-182 [Journal]
  63. Sorin Istrail, Pavel A. Pevzner, Ron Shamir
    Preface. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2007, v:155, n:6-7, pp:673-674 [Journal]
  64. Piotr Berman, Amir Ben-Dor, Itsik Pe'er, Roded Sharan, Ron Shamir
    On the Complexity of Positional Sequencing by Hybridization [Citation Graph (0, 0)][DBLP]
    Electronic Colloquium on Computational Complexity (ECCC), 2001, v:8, n:54, pp:- [Journal]
  65. Tzvika Hartman, Ron Shamir
    A simpler and faster 1.5-approximation algorithm for sorting by transpositions. [Citation Graph (0, 0)][DBLP]
    Inf. Comput., 2006, v:204, n:2, pp:275-290 [Journal]
  66. Gad Kimmel, Roded Sharan, Ron Shamir
    Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification, and Population Stratification. [Citation Graph (0, 0)][DBLP]
    INFORMS Journal on Computing, 2004, v:16, n:4, pp:360-370 [Journal]
  67. Erez Hartuv, Ron Shamir
    A clustering algorithm based on graph connectivity. [Citation Graph (0, 0)][DBLP]
    Inf. Process. Lett., 2000, v:76, n:4-6, pp:175-181 [Journal]
  68. Dorit S. Hochbaum, Ron Shamir
    An O(n log2 n) Algorithm for the Maximum Weighted Tardiness Problem. [Citation Graph (0, 0)][DBLP]
    Inf. Process. Lett., 1989, v:31, n:4, pp:215-219 [Journal]
  69. Haim Kaplan, Ron Shamir
    The Domatic Number Problem on Some Perfect Graph Families. [Citation Graph (0, 0)][DBLP]
    Inf. Process. Lett., 1994, v:49, n:1, pp:51-56 [Journal]
  70. Martin Charles Golumbic, Ron Shamir
    Complexity and Algorithms for Reasoning about Time: A Graph-Theoretic Approach. [Citation Graph (0, 0)][DBLP]
    J. ACM, 1993, v:40, n:5, pp:1108-1133 [Journal]
  71. Martin Charles Golumbic, Haim Kaplan, Ron Shamir
    Graph Sandwich Problems. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 1995, v:19, n:3, pp:449-473 [Journal]
  72. Ron Shamir, Dekel Tsur
    Faster Subtree Isomorphism. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 1999, v:33, n:2, pp:267-280 [Journal]
  73. Michal Ozery-Flato, Ron Shamir
    Two Notes on Genome Rearrangement. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2003, v:1, n:1, pp:71-94 [Journal]
  74. Gad Kimmel, Ron Shamir
    The Incomplete Perfect Phylogeny Haplotype Problem. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2005, v:3, n:2, pp:359-384 [Journal]
  75. Ilan Adler, Richard M. Karp, Ron Shamir
    A simplex variant solving an m times d linear program in O(min(m2, d2) expected number of pivot steps. [Citation Graph (0, 0)][DBLP]
    J. Complexity, 1987, v:3, n:4, pp:372-387 [Journal]
  76. Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir
    The Restriction Scaffold Problem. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:10, n:3/4, pp:385-398 [Journal]
  77. Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan
    On the Complexity of Positional Sequencing by Hybridization. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:8, n:4, pp:361-371 [Journal]
  78. Amir Ben-Dor, Ron Shamir, Zohar Yakhini
    Clustering Gene Expression Patterns. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1999, v:6, n:3/4, pp:281-297 [Journal]
  79. Irit Gat-Viks, Amos Tanay, Ron Shamir
    Modeling and Analysis of Heterogeneous Regulation in Biological Networks. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:6, pp:1034-1049 [Journal]
  80. Paul W. Goldberg, Martin Charles Golumbic, Haim Kaplan, Ron Shamir
    Four Strikes Against Physical Mapping of DNA. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1995, v:2, n:1, pp:139-152 [Journal]
  81. Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir
    Handling Long Targets and Errors in Sequencing by Hybridization. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:10, n:3/4, pp:483-497 [Journal]
  82. Richard M. Karp, Itsik Pe'er, Ron Shamir
    An Algorithm Combining Discrete and Continuous Methods for Optical Mapping. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:5, pp:745-760 [Journal]
  83. Richard M. Karp, Ron Shamir
    Algorithms for Optical Mapping. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:1-2, pp:303-316 [Journal]
  84. Chaim Linhart, Ron Shamir
    The Degenerate Primer Design Problem: Theory and Applications. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:4, pp:431-456 [Journal]
  85. Guy Mayraz, Ron Shamir
    Construction of Physical Maps from Oligonucleotide Fingerprints Data. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1999, v:6, n:2, pp:237-252 [Journal]
  86. Ron Shamir
    Preface: Special RECOMB 2000 Issue. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:3-4, pp:329-330 [Journal]
  87. Ron Shamir, Dekel Tsur
    Large Scale Sequencing by Hybridization. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:9, n:2, pp:413-428 [Journal]
  88. Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp
    Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:6, pp:835-846 [Journal]
  89. Amos Tanay, Ron Shamir
    Multilevel Modeling and Inference of Transcription Regulation. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2004, v:11, n:2/3, pp:357-375 [Journal]
  90. Richard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir
    Guest Editors' foreword. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2005, v:70, n:3, pp:283-0 [Journal]
  91. Ming Li, Pavel A. Pevzner, Ron Shamir
    Foreword. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2002, v:65, n:3, pp:441- [Journal]
  92. Ilan Adler, Ron Shamir
    A randomized scheme for speeding up algorithms for linear and convex programming problems with high constraints-to-variables ratio. [Citation Graph (0, 0)][DBLP]
    Math. Program., 1993, v:61, n:, pp:39-52 [Journal]
  93. Dorit S. Hochbaum, Ron Shamir, J. George Shanthikumar
    A polynomial algorithm for an integer quadratic non-separable transportation problem. [Citation Graph (0, 0)][DBLP]
    Math. Program., 1992, v:55, n:, pp:359-371 [Journal]
  94. Pavol Hell, Ron Shamir, Roded Sharan
    A Fully Dynamic Algorithm for Recognizing and Representing Proper Interval Graphs. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 2001, v:31, n:1, pp:289-305 [Journal]
  95. Haim Kaplan, Ron Shamir
    Pathwidth, Bandwidth, and Completion Problems to Proper Interval Graphs with Small Cliques. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1996, v:25, n:3, pp:540-561 [Journal]
  96. Haim Kaplan, Ron Shamir, Robert Endre Tarjan
    A Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1999, v:29, n:3, pp:880-892 [Journal]
  97. Haim Kaplan, Ron Shamir, Robert Endre Tarjan
    Tractability of Parameterized Completion Problems on Chordal, Strongly Chordal, and Proper Interval Graphs. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1999, v:28, n:5, pp:1906-1922 [Journal]
  98. Assaf Natanzon, Ron Shamir, Roded Sharan
    A Polynomial Approximation Algorithm for the Minimum Fill-In Problem. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 2000, v:30, n:4, pp:1067-1079 [Journal]
  99. Itsik Pe'er, Tal Pupko, Ron Shamir, Roded Sharan
    Incomplete Directed Perfect Phylogeny. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 2004, v:33, n:3, pp:590-607 [Journal]
  100. Itsik Pe'er, Ron Shamir
    Realizing Interval Graphs with Size and Distance Constraints. [Citation Graph (0, 0)][DBLP]
    SIAM J. Discrete Math., 1997, v:10, n:4, pp:662-687 [Journal]
  101. Endre Boros, Peter L. Hammer, Ron Shamir
    A Polynomial Algorithm for Balancing Acyclic Data Flow Graphs. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Computers, 1992, v:41, n:11, pp:1380-1385 [Journal]
  102. Itsik Pe'er, Ron Shamir
    Satisfiability Problems on Intervals and Unit Intervals. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1997, v:175, n:2, pp:349-372 [Journal]
  103. Ron Shamir
    A fast algorithm for constructing monge sequences in transportation problems with forbidden arcs. [Citation Graph (0, 0)][DBLP]
    Discrete Mathematics, 1993, v:114, n:1-3, pp:435-444 [Journal]
  104. Richard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir
    Special issue on computational molecular biology. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2007, v:73, n:7, pp:1023- [Journal]

  105. Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles. [Citation Graph (, )][DBLP]


  106. Sorting Cancer Karyotypes by Elementary Operations. [Citation Graph (, )][DBLP]


  107. Topology-Free Querying of Protein Interaction Networks. [Citation Graph (, )][DBLP]


  108. Discovering Transcriptional Modules by Combined Analysis of Expression Profiles and Regulatory Sequences. [Citation Graph (, )][DBLP]


  109. A Faster Algorithm for RNA Co-folding. [Citation Graph (, )][DBLP]


  110. Identifying functional modules using expression profiles and confidence-scored protein interactions. [Citation Graph (, )][DBLP]


  111. GEVALT: An integrated software tool for genotype analysis. [Citation Graph (, )][DBLP]


  112. SPIKE - a database, visualization and analysis tool of cellular signaling pathways. [Citation Graph (, )][DBLP]


  113. Minimizing the number of tardy job units under release time constraints. [Citation Graph (, )][DBLP]


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