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Rolf Apweiler: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Evgenia V. Kriventseva, Nicola J. Mulder
    Automation of Protein Sequence Characterization and Its Application in Whole Proteome Analysis. [Citation Graph (0, 0)][DBLP]
    Gene Regulations and Metabolism, 2002, pp:19-47 [Conf]
  2. Rolf Apweiler, Vivien Junker, Alain Gateau, Claire O'Donovan, Fiona Lang, Amos Bairoch
    New Developments in Linking of Biological Databases and Computer-Generation of Annotations: SWISS-PROT and Its Computer-Annotated Supplement TREMBL. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics - Selected Papers, 1996, pp:44-51 [Conf]
  3. Rolf Apweiler, Vivien Junker, Alain Gateau, Claire O'Donovan, Fiona Lang, Amos Bairoch
    New Developments in the Linking of Biological Databases and Computer-Generation of Annotation. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:29-34 [Conf]
  4. Margaret Biswas, Rolf Apweiler, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Evgeni M. Zdobnov
    Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2000, pp:149-158 [Conf]
  5. Wolfgang Fleischmann, Steffen Möller, Alain Gateau, Rolf Apweiler
    A novel method for automatic and reliable functional annotation of proteins. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  6. Astrid Fleischmann, Michael Darsow, Kirill Degtyarenko, Rolf Apweiler
    IntEnz - The Enzyme Database in Oracle. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:148-149 [Conf]
  7. Henning Hermjakob, Claire O'Donovan, Maria Jesus Martin, Fiona Lang, Rolf Apweiler
    SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  8. Ernst Kretschmann, Rolf Apweiler
    Automatic rule generation for protein annotation with the C4.5 data-mining algorithm applied on peptides in Ensembl. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:53-57 [Conf]
  9. Steffen Möller, Ulf Leser, Wolfgang Fleischmann, Rolf Apweiler
    EDITtoTrEMBL: A distributed approach to high-quality automated protein sequence annotation. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  10. Steffen Möller, Michael J. Wise, David P. Kreil, Michael Schroeder, D. Gilbest, Rolf Apweiler
    Facilitating context-sensitive queries: A tool to rephrase SWISS-PROT. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:216-218 [Conf]
  11. Claire O'Donovan, Maria Jesus Martin, Eric Glémet, Jean-Jacques Codani, Rolf Apweiler
    Removing Redundancy in SWISS-PROT and TrEMBL. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  12. Kai J. Runte, Henning Hermjakob, Rolf Apweiler
    Towards a New Curation Environment for the TrEMBL Database. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:220- [Conf]
  13. Arno Velds, Henning Hermjakob, Rolf Apweiler
    Feature Propagation - Semi Automatic transfer of position dependent SWISS-PROT annotation. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:229-230 [Conf]
  14. Evgeni M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, Thure Etzold
    The EBI SRS Server: Recent Developments. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2000, pp:139-148 [Conf]
  15. Rolf Apweiler, Alain Gateau, Sergio Contrino, Maria Jesus Martin, Vivien Junker, Claire O'Donovan, Fiona Lang, Nicoletta Mitaritonna, Stephanie Kappus, Amos Bairoch
    Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:33-43 [Conf]
  16. Daniela Wieser, Ernst Kretschmann, Rolf Apweiler
    Filtering erroneous protein annotation. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:342-347 [Conf]
  17. Sandra E. Orchard, Luisa Montecchi-Palazzi, Henning Hermjakob, Rolf Apweiler
    The Use of Common Ontologies and Controlled Vocabularies to Enable Data Exchange and Deposition for Complex Proteomic Experiments. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2005, pp:- [Conf]
  18. Rolf Apweiler
    Functional Information in SWISS-PROT: the Basis for Large-scale Characterisation of Protein Sequences. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2001, v:2, n:1, pp:9-18 [Journal]
  19. Margaret Biswas, Joseph F. O'Rourke, Evelyn Camon, Gillian Fraser, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler
    Applications of InterPro in Protein Annotation and Genome Analysis. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:3, pp:285-295 [Journal]
  20. Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist
    InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:3, pp:225-235 [Journal]
  21. Claire O'Donovan, Maria Jesus Martin, Alexandre Gattiker, Elisabeth Gasteiger, Amos Bairoch, Rolf Apweiler
    High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2002, v:3, n:3, pp:275-284 [Journal]
  22. Rolf Apweiler, Paul Kersey, Vivien Junker, Amos Bairoch
    Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:6, pp:533-534 [Journal]
  23. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    InterPro-an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:12, pp:1145-1150 [Journal]
  24. Christian Blaschke, Alexander S. Yeh, Evelyn Camon, Marc Colosimo, Rolf Apweiler, Lynette Hirschman, Alfonso Valencia
    Do you do text? [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:23, pp:4199-4200 [Journal]
  25. Wolfgang Fleischmann, Steffen Möller, Alain Gateau, Rolf Apweiler
    A novel method for automatic functional annotation of proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:3, pp:228-233 [Journal]
  26. Henning Hermjakob, Wolfgang Fleischmann, Rolf Apweiler
    Swissknife - 'lazy parsing' of SWISS-PROT entries. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:9, pp:771-772 [Journal]
  27. Philip Jones, Nisha Vinod, Thomas Down, Andre Hackmann, Andreas Kähäri, Ernst Kretschmann, Antony F. Quinn, Daniela Wieser, Henning Hermjakob, Rolf Apweiler
    Dasty and UniProt DAS: a perfect pair for protein feature visualization. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:14, pp:3198-3199 [Journal]
  28. V. L. Junker, Rolf Apweiler, Amos Bairoch
    Representation of functional information in the SWISS-PROT Data Bank. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:12, pp:1066-1067 [Journal]
  29. Alexander Kanapin, Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Florence Servant, Evgeni M. Zdobnov
    Interactive InterPro-based comparisons of proteins in whole genomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:2, pp:374-375 [Journal]
  30. Paul Kersey, Henning Hermjakob, Rolf Apweiler
    VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:11, pp:1048-1049 [Journal]
  31. Ernst Kretschmann, Wolfgang Fleischmann, Rolf Apweiler
    Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:10, pp:920-926 [Journal]
  32. Rasko Leinonen, Federico Garcia Diez, David Binns, Wolfgang Fleischmann, Rodrigo Lopez, Rolf Apweiler
    UniProt archive. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3236-3237 [Journal]
  33. Rasko Leinonen, Francesco Nardone, Weimin Zhu, Rolf Apweiler
    UniSave: the UniProtKB Sequence/Annotation Version database. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:10, pp:1284-1285 [Journal]
  34. Kerstin M. L. Menne, Henning Hermjakob, Rolf Apweiler
    A comparison of signal sequence prediction methods using a test set of signal peptides. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:8, pp:741-742 [Journal]
  35. Steffen Möller, Michael D. R. Croning, Rolf Apweiler
    Evaluation of methods for the prediction of membrane spanning regions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:7, pp:646-653 [Journal]
  36. Steffen Möller, Michael D. R. Croning, Rolf Apweiler
    Erratum: Evaluation of methods for the prediction of membrane spanning regions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:1, pp:218- [Journal]
  37. Steffen Möller, Evgenia V. Kriventseva, Rolf Apweiler
    A collection of well characterised integral membrane proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:12, pp:1159-1160 [Journal]
  38. Steffen Möller, Ulf Leser, Wolfgang Fleischmann, Rolf Apweiler
    EDITtoTrEMBL: a distributed approach to high-quality automated protein sequence annotation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:3, pp:219-227 [Journal]
  39. Claire O'Donovan, Maria Jesus Martin, Eric Glémet, Jean-Jacques Codani, Rolf Apweiler
    Removing redundancy in SWISS-PROT and TrEMBL. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:3, pp:258-259 [Journal]
  40. Robert Petryszak, Ernst Kretschmann, Daniela Wieser, Rolf Apweiler
    The predictive power of the CluSTr database. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:18, pp:3604-3609 [Journal]
  41. Evgeni M. Zdobnov, Rolf Apweiler
    InterProScan - an integration platform for the signature-recognition methods in InterPro. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:9, pp:847-848 [Journal]
  42. Evgeni M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, Thure Etzold
    The EBI SRS server-recent developments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:2, pp:368-373 [Journal]
  43. Evgeni M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, Thure Etzold
    The EBI SRS server-new features. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:8, pp:1149-1150 [Journal]
  44. Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob
    The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:97- [Journal]
  45. Steffen Möller, Michael Schroeder, Rolf Apweiler
    Consistent Integration of Non-reliable Heterogeneous Information Resources Applied to the Annotation of Transmembrane Proteins. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 2002, v:26, n:1, pp:41-49 [Journal]
  46. Michele Magrane, Rolf Apweiler
    Organisation and standardisation of information in SWISS_PROT and TrEMBL. [Citation Graph (0, 0)][DBLP]
    Data Science Journal, 2002, v:1, n:1, pp:13-18 [Journal]
  47. Evelyn Camon, Daniel Barrell, Vivian Lee, Emily Dimmer, Rolf Apweiler
    The Gene Ontology Annotation (GOA) Database - An integrated resource of GO annotations to the UniProt Knowledgebase. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2003, v:4, n:, pp:- [Journal]
  48. Vivian Lee, Evelyn Camon, Emily Dimmer, Daniel Barrell, Rolf Apweiler
    GOA? - Use of Gene Ontology Annotation (GOA) for biological interpretation of '-omics' data and for validation of automatic annotation tools. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2004, v:5, n:, pp:- [Journal]
  49. Manuela Pruess, Paul Kersey, Rolf Apweiler
    The Integr8 project - a resource for genomic and proteomic data. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2004, v:5, n:, pp:- [Journal]
  50. Amos Bairoch, Rolf Apweiler
    The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:45-48 [Journal]
  51. Amos Bairoch, Rolf Apweiler
    The SWISS-PROT protein sequence data bank and its new supplement TREMBL. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1996, v:24, n:1, pp:21-25 [Journal]
  52. Amos Bairoch, Rolf Apweiler
    The SWISS-PROT protein sequence data bank and its supplement TrEMBL. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1997, v:25, n:1, pp:31-36 [Journal]
  53. Amos Bairoch, Rolf Apweiler
    The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:38-42 [Journal]
  54. Amos Bairoch, Rolf Apweiler
    The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:49-54 [Journal]
  55. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    The InterPro database, an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:37-40 [Journal]
  56. Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Evgeni M. Zdobnov
    Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:44-48 [Journal]
  57. Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh
    UniProt: the Universal Protein knowledgebase. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:115-119 [Journal]
  58. Brigitte Boeckmann, Amos Bairoch, Rolf Apweiler, Marie-Claude Blatter, Anne Estreicher, Elisabeth Gasteiger, Maria Jesus Martin, Karine Michoud, Claire O'Donovan, Isabelle Phan, Sandrine Pilbout, Michel Schneider
    The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:365-370 [Journal]
  59. Catherine Brooksbank, Evelyn Camon, Midori A. Harris, Michele Magrane, Maria Jesus Martin, Nicola J. Mulder, Claire O'Donovan, Helen E. Parkinson, Mary Ann Tuli, Rolf Apweiler, Ewan Birney, Alvis Brazma, Kim Henrick, Rodrigo Lopez, Guenter Stoesser, Peter Stoehr, Graham Cameron
    The European Bioinformatics Institute's data resources. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:43-50 [Journal]
  60. Evelyn Camon, Michele Magrane, Daniel Barrell, Vivian Lee, Emily Dimmer, John Maslen, David Binns, Nicola Harte, Rodrigo Lopez, Rolf Apweiler
    The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:262-266 [Journal]
  61. Astrid Fleischmann, Michael Darsow, Kirill Degtyarenko, Wolfgang Fleischmann, Sinéad Boyce, Kristian B. Axelsen, Amos Bairoch, Dietmar Schomburg, Keith F. Tipton, Rolf Apweiler
    IntEnz, the integrated relational enzyme database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:434-437 [Journal]
  62. Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler
    IntAct: an open source molecular interaction database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:452-455 [Journal]
  63. Evgenia V. Kriventseva, Wolfgang Fleischmann, Evgeni M. Zdobnov, Rolf Apweiler
    CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:33-36 [Journal]
  64. Evgenia V. Kriventseva, Florence Servant, Rolf Apweiler
    Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:388-389 [Journal]
  65. Tamara Kulikova, Philippe Aldebert, Nicola Althorpe, Wendy Baker, Kirsty Bates, Paul Browne, Alexandra van den Broek, Guy Cochrane, Karyn Duggan, Ruth Eberhardt, Nadeem Faruque, Maria Garcia-Pastor, Nicola Harte, Carola Kanz, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Renato Mancuso, Michelle McHale, Francesco Nardone, Ville Silventoinen, Peter Stoehr, Guenter Stoesser, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
    The EMBL Nucleotide Sequence Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:27-30 [Journal]
  66. Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov
    The InterPro Database, 2003 brings increased coverage and new features. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:315-318 [Journal]
  67. Manuela Pruess, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler
    The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:414-417 [Journal]
  68. Paul Kersey, Lawrence Bower, Lorna Morris, Alan Horne, Robert Petryszak, Carola Kanz, Alexander Kanapin, Ujjwal Das, Karine Michoud, Isabelle Phan, Alexandre Gattiker, Tamara Kulikova, Nadeem Faruque, Karyn Duggan, Peter Mclaren, Britt Reimholz, Laurent Duret, Simon Penel, Ingmar Reuter, Rolf Apweiler
    Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:297-302 [Journal]
  69. Samir S. Velankar, P. McNeil, V. Mittard-Runte, A. Suarez, Daniel Barrell, Rolf Apweiler, Kim Henrick
    E-MSD: an integrated data resource for bioinformatics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:262-265 [Journal]
  70. Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu
    InterPro, progress and status in 2005. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:201-205 [Journal]
  71. Amos Bairoch, Rolf Apweiler, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, María J. Martín, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh
    The Universal Protein Resource (UniProt). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:154-159 [Journal]
  72. Carola Kanz, Philippe Aldebert, Nicola Althorpe, Wendy Baker, Alastair Baldwin, Kirsty Bates, Paul Browne, Alexandra van den Broek, Matias Castro, Guy Cochrane, Karyn Duggan, Ruth Eberhardt, Nadeem Faruque, John Gamble, Federico Garcia Diez, Nicola Harte, Tamara Kulikova, Quan Lin, Vincent Lombard, Rodrigo Lopez, Renato Mancuso, Michelle McHale, Francesco Nardone, Ville Silventoinen, Siamak Sobhany, Peter Stoehr, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
    The EMBL Nucleotide Sequence Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:29-33 [Journal]
  73. Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek
    The Universal Protein Resource (UniProt): an expanding universe of protein information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:187-191 [Journal]
  74. Emmanuel Quevillon, Ville Silventoinen, Sharmila Pillai, Nicola Harte, Nicola J. Mulder, Rolf Apweiler, Rodrigo Lopez
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    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:116-120 [Journal]
  75. Philip Jones, Richard G. Côté, Lennart Martens, Antony F. Quinn, Chris F. Taylor, William Derache, Henning Hermjakob, Rolf Apweiler
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    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:659-663 [Journal]
  76. Guy Cochrane, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Wendy Baker, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Paul Browne, Alexandra van den Broek, Matias Castro, Karyn Duggan, Ruth Eberhardt, Nadeem Faruque, John Gamble, Carola Kanz, Tamara Kulikova, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Michelle McHale, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Siamak Sobhany, Peter Stoehr, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
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    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:10-15 [Journal]
  77. Tamara Kulikova, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Lawrence Bower, Paul Browne, Matias Castro, Guy Cochrane, Karyn Duggan, Ruth Eberhardt, Nadeem Faruque, Gemma Hoad, Carola Kanz, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Sheila Plaister, Siamak Sobhany, Peter Stoehr, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
    EMBL Nucleotide Sequence Database in 2006. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:16-20 [Journal]
  78. Samuel Kerrien, Y. Alam-Faruque, B. Aranda, I. Bancarz, A. Bridge, C. Derow, Emily Dimmer, M. Feuermann, A. Friedrichsen, R. Huntley, C. Kohler, J. Khadake, C. Leroy, A. Liban, C. Lieftink, Luisa Montecchi-Palazzi, Sandra E. Orchard, J. Risse, K. Robbe, Bernd Roechert, D. Thorneycroft, Y. Zhang, Rolf Apweiler, Henning Hermjakob
    IntAct - open source resource for molecular interaction data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:561-565 [Journal]
  79. Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats
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    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:224-228 [Journal]
  80. Sebastian Klie, Alexander Hinneburg, Lennart Martens, Juan Antonio Vizcaino, Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob
    Analysing latent topics in large-scale proteomics. [Citation Graph (0, 0)][DBLP]
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  81. An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases. [Citation Graph (, )][DBLP]


  82. UniProtJAPI: a remote API for accessing UniProt data. [Citation Graph (, )][DBLP]


  83. QuickGO: a web-based tool for Gene Ontology searching. [Citation Graph (, )][DBLP]


  84. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. [Citation Graph (, )][DBLP]


  85. The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. [Citation Graph (, )][DBLP]


  86. An evaluation of GO annotation retrieval for BioCreAtIvE and GOA. [Citation Graph (, )][DBLP]


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