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Thomas Dandekar: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Steffen Schmidt, Thomas Dandekar
    Metabolic Pathways. [Citation Graph (0, 0)][DBLP]
    Gene Regulations and Metabolism, 2002, pp:251-272 [Conf]
  2. Thomas Dandekar, Katrin Beyer, Peer Bork, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, W. Keller, Sonja Schreiber
    Systematic genomic screening and analysis of mRNA in the 5' and 3` untranslated region. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:31-32 [Conf]
  3. Thomas Dandekar, Stefan Schuster, Martijn A. Huynen, Peer Bork
    Pathway alignment: Application in the comparative analysis of glycolysis. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  4. Tobias Müller, Sven Rahmann, Thomas Dandekar, Matthias Wolf
    Robust estimation of the phylogeny of Chlorophyceae(Chlorophyta)based on profile distances. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2003, pp:97-101 [Conf]
  5. Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar
    Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2000, pp:115-120 [Conf]
  6. Peter Bengert, Thomas Dandekar
    Current efforts in the analysis of RNAi and RNAi target genes. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2005, v:6, n:1, pp:72-85 [Journal]
  7. Thomas Dandekar, Katrin Beyer, Peer Bork, Mary-Rose Kenealy, Kostas Pantopoulos, Mathias Hentze, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, Sonja Schreiber
    Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:3, pp:271-278 [Journal]
  8. Joachim Friedrich, Thomas Dandekar, Matthias Wolf, Tobias Müller
    ProfDist: a tool for the construction of large phylogenetic trees based on profile distances. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2108-2109 [Journal]
  9. Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar
    Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:2, pp:351-361 [Journal]
  10. Torben Friedrich, Birgit Pils, Thomas Dandekar, Jörg Schultz, Tobias Müller
    Modelling interaction sites in protein domains with interaction profile hidden Markov models. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:23, pp:2851-2857 [Journal]
  11. Roland Schwarz, Patrick Musch, Axel von Kamp, Bernd Engels, R. Heiner Schirmer, Stefan Schuster, Thomas Dandekar
    YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:135- [Journal]
  12. Thomas Dandekar, Fuli Du, R. Heiner Schirmer, Steffen Schmidt
    Medical Target Prediction From Genome Sequence: Combining Different Sequence Analysis Algorithms with Expert Knowledge and Input From Artificial Intelligence Approaches. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 2002, v:26, n:1, pp:15-21 [Journal]
  13. Thomas Dandekar, Steffen Schmidt
    Metabolites, pathway flexibility. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2004, v:5, n:, pp:- [Journal]
  14. Matthias Wolf, Joachim Friedrich, Thomas Dandekar, Tobias Müller
    CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2005, v:5, n:, pp:- [Journal]
  15. Helge Bertram, Thomas Dandekar
    Stoffwechselanalyse: Der Weg vom Genom zum metabolischen Netzwerk (Pathway Analysis: On the Route from Genomics to Metabolic Networks). [Citation Graph (0, 0)][DBLP]
    it - Information Technology, 2004, v:46, n:1, pp:5-11 [Journal]
  16. Daniel Faller, Thomas Reinheckel, Daniel Wenzler, Sascha Hagemann, Ke Xiao, Josef Honerkamp, Christoph Peters, Thomas Dandekar, Jens Timmer
    An Open Source Protein Gel Documentation System for Proteome Analyses. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2004, v:44, n:1, pp:168-169 [Journal]
  17. Steffen Schmidt, Peer Bork, Thomas Dandekar
    A Versatile Structural Domain Analysis Server Using Profile Weight Matrices. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Computer Sciences, 2002, v:42, n:2, pp:405-407 [Journal]
  18. Peter Bengert, Thomas Dandekar
    A software tool-box for analysis of regulatory RNA elements. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3441-3445 [Journal]
  19. Peter Bengert, Thomas Dandekar
    Riboswitch finder tool for identification of riboswitch RNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:154-159 [Journal]
  20. Tobias Penzkofer, Thomas Dandekar, Tomasz Zemojtel
    L1Base: from functional annotation to prediction of active LINE-1 elements. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:498-500 [Journal]
  21. Jörg Schultz, Tobias Müller, Marco Achtziger, Philipp N. Seibel, Thomas Dandekar, Matthias Wolf
    The internal transcribed spacer 2 database - a web server for (not only) low level phylogenetic analyses. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:704-707 [Journal]

  22. Identifying functional modules in protein-protein interaction networks: an integrated exact approach. [Citation Graph (, )][DBLP]


  23. ProfDistS: (profile-) distance based phylogeny on sequence - structure alignments. [Citation Graph (, )][DBLP]


  24. BioNet: an R-Package for the functional analysis of biological networks. [Citation Graph (, )][DBLP]


  25. Integrated network reconstruction, visualization and analysis using YANAsquare. [Citation Graph (, )][DBLP]


  26. XML schemas for common bioinformatic data types and their application in workflow systems. [Citation Graph (, )][DBLP]


  27. 4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing. [Citation Graph (, )][DBLP]


  28. inGeno - an integrated genome and ortholog viewer for improved genome to genome comparisons. [Citation Graph (, )][DBLP]


  29. JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes. [Citation Graph (, )][DBLP]


  30. The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays. [Citation Graph (, )][DBLP]


  31. Towards Design and Implementation of a Language Technology based Information Processor for PDM Systems [Citation Graph (, )][DBLP]


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