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Adam Godzik: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Baohong Zhang, Adam Godzik
    The Meaning and Limitations of Protein Structure Alignments. [Citation Graph (0, 0)][DBLP]
    3DPVT, 2002, pp:729-736 [Conf]
  2. Yuzhen Ye, Adam Godzik
    Flexible structure alignment by chaining aligned fragment pairs allowing twists. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:246-255 [Conf]
  3. Lukasz Jaroszewski, Adam Godzik
    Search for a New Description of Protein Topology and Local Structure. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:211-217 [Conf]
  4. Yuzhen Ye, Andrei Osterman, Ross A. Overbeek, Adam Godzik
    Automatic detection of subsystem/pathway variants in genome analysis. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:478-486 [Conf]
  5. Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook
    The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2004, pp:375-386 [Conf]
  6. Yuzhen Ye, Zhanwen Li, Adam Godzik
    Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2006, pp:439-450 [Conf]
  7. Weizhong Li, Adam Godzik
    VISSA: a program to visualize structural features from structure sequence alignment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:7, pp:887-888 [Journal]
  8. Adam Godzik, Jeffrey Skolnick
    Flexible algorithm for direct multiple alignment of protein structures and sequences. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1994, v:10, n:6, pp:587-596 [Journal]
  9. Weizhong Li, Frederic Pio, Krzysztof Pawlowski, Adam Godzik
    Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:12, pp:1105-1110 [Journal]
  10. Weizhong Li, Adam Godzik
    Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:13, pp:1658-1659 [Journal]
  11. Weizhong Li, Lukasz Jaroszewski, Adam Godzik
    Clustering of highly homologous sequences to reduce the size of large protein databases. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:3, pp:282-283 [Journal]
  12. Weizhong Li, Lukasz Jaroszewski, Adam Godzik
    Tolerating some redundancy significantly speeds up clustering of large protein databases. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:1, pp:77-82 [Journal]
  13. Yuzhen Ye, Adam Godzik
    Multiple flexible structure alignment using partial order graphs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2362-2369 [Journal]
  14. Yuzhen Ye, Lukasz Jaroszewski, Weizhong Li, Adam Godzik
    A segment alignment approach to protein comparison. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:6, pp:742-749 [Journal]
  15. Iddo Friedberg, Tim Harder, Rachel Kolodny, Einat Sitbon, Zhanwen Li, Adam Godzik
    Using an alignment of fragment strings for comparing protein structures. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:219-224 [Journal]
  16. Marcin Grynberg, Lukasz Jaroszewski, Adam Godzik
    Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2003, v:4, n:, pp:46- [Journal]
  17. Dariusz Plewczynski, Leszek Rychlewski, Yuzhen Ye, Lukasz Jaroszewski, Adam Godzik
    Integrated web service for improving alignment quality based on segments comparison. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:98- [Journal]
  18. Krzysztof Pawlowski, Leszek Rychlewski, John C. Reed, Adam Godzik
    From Fold to Function Predictions: An Apoptosis Regulator Protein BID. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 2000, v:24, n:3-4, pp:511-517 [Journal]
  19. Adam Godzik, Andrzej Kolinski, Jeffrey Skolnick
    De novo and inverse folding predictions of protein structure and dynamics. [Citation Graph (0, 0)][DBLP]
    Journal of Computer-Aided Molecular Design, 1993, v:7, n:4, pp:397-438 [Journal]
  20. Yuzhen Ye, Adam Godzik
    FATCAT: a web server for flexible structure comparison and structure similarity searching. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:582-585 [Journal]
  21. Iddo Friedberg, Adam Godzik
    Fragnostic: walking through protein structure space. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:249-251 [Journal]
  22. Lukasz Jaroszewski, Leszek Rychlewski, Zhanwen Li, Weizhong Li, Adam Godzik
    FFAS03: a server for profile-profile sequence alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:284-288 [Journal]
  23. Iddo Friedberg, Tim Harder, Adam Godzik
    JAFA: a protein function annotation meta-server. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:379-381 [Journal]
  24. Zhanwen Li, Yuzhen Ye, Adam Godzik
    Flexible Structural Neighborhood - a database of protein structural similarities and alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:277-280 [Journal]
  25. Yoshinobu Igarashi, Alexey M. Eroshkin, Svetlana Gramatikova, Kosi Gramatikoff, Ying Zhang, Jeffrey W. Smith, Andrei Osterman, Adam Godzik
    CutDB: a proteolytic event database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:546-549 [Journal]

  26. TOM - Task and Object Management for Grid Clusters. [Citation Graph (, )][DBLP]


  27. XtalPred: a web server for prediction of protein crystallizability. [Citation Graph (, )][DBLP]


  28. TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model. [Citation Graph (, )][DBLP]


  29. The 2006 Automated Function Prediction Meeting. [Citation Graph (, )][DBLP]


  30. Representing and comparing protein structures as paths in three-dimensional space. [Citation Graph (, )][DBLP]


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