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Luciano Milanesi: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Ivan Merelli, Luciano Milanesi, Daniele D'Agostino, Andrea Clematis, Marco Vanneschi, Marco Danelutto
    Using Parallel Isosurface Extraction in Superficial Molecular Modeling. [Citation Graph (0, 0)][DBLP]
    DFMA, 2005, pp:288-294 [Conf]
  2. Y. V. Kondrakhin, F. A. Kolpakov, Alexander E. Kel, Nikolay A. Kolchanov, Luciano Milanesi
    Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:247-250 [Conf]
  3. Alexander E. Kel, Y. V. Kondrakhin, Ph. A. Kolpakov, O. V. Kel, Aida G. Romashchenko, Edgar Wingender, Luciano Milanesi, Nikolay A. Kolchanov
    Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:197-205 [Conf]
  4. Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Y. V. Kondrakhin, Anatoly S. Frolov, F. A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer
    GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. [Citation Graph (0, 0)][DBLP]
    ISMB, 1998, pp:95-104 [Conf]
  5. Igor B. Rogozin, B. A. Malyarchuk, Youri I. Pavlov, Luciano Milanesi
    From Context-Dependence of Mutations to Molecular Mechanisms of Mutagenesis. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2005, pp:- [Conf]
  6. Nicolas Jacq, Vincent Breton, Hsin-Yen Chen, Li-Yung Ho, Martin Hofmann 0009, Hurng-Chun Lee, Yannick Legré, Simon C. Lin, Astrid Maaß, Emmanuel Medernach, Ivan Merelli, Luciano Milanesi, Giulio Rastelli, Matthieu Reichstadt, Jean Salzemann, Horst Schwichtenberg, Mahendrakar Sridhar, Vinod Kasam, Ying-Ta Wu, Marc Zimmermann
    Grid-Enabled High Throughput Virtual Screening. [Citation Graph (0, 0)][DBLP]
    GCCB, 2006, pp:45-59 [Conf]
  7. Igor B. Rogozin, Vladimir N. Babenko, Luciano Milanesi, Youri I. Pavlov
    Computational analysis of mutation spectra. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2003, v:4, n:3, pp:210-227 [Journal]
  8. Igor B. Rogozin, V. I. Mayorov, M. V. Lavrentieva, Luciano Milanesi, L. R. Adkison
    Prediction and Phylogenetic Analysis of Mammalian Short Interspersed Elements (SINEs). [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2000, v:1, n:3, pp:260-274 [Journal]
  9. Emanuela Merelli, Giuliano Armano, Nicola Cannata, Flavio Corradini, Mark d'Inverno, Andreas Doms, Phillip W. Lord, Andrew Martin, Luciano Milanesi, Steffen Möller, Michael Schroeder, Michael Luck
    Agents in bioinformatics, computational and systems biology. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2007, v:8, n:1, pp:45-59 [Journal]
  10. Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, F. A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Y. V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton
    Integrated databases and computer systems for studying eukaryotic gene expression. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:7, pp:669-686 [Journal]
  11. Alexander E. Kel, Mikhail P. Ponomarenko, E. A. Likhachev, Yuri L. Orlov, I. V. Ischenko, Luciano Milanesi, Nikolay A. Kolchanov
    SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:6, pp:617-627 [Journal]
  12. Y. V. Kondrakhin, Alexander E. Kel, Nikolay A. Kolchanov, Aida G. Romashchenko, Luciano Milanesi
    Eukaryotic promoter recognition by binding sites for transcription factors. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1995, v:11, n:5, pp:477-488 [Journal]
  13. Luciano Milanesi, D. D'Angelo, Igor B. Rogozin
    GeneBuilder: interactive in silico prediction of gene structure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:7, pp:612-621 [Journal]
  14. Luciano Milanesi, M. Muselli, P. Arrigo
    Hamming-Clustering method for signals prediction in 5' and 3' regions of eukaryotic genes. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:5, pp:399-404 [Journal]
  15. Igor B. Rogozin, Alexey V. Kochetov, Fyodor A. Kondrashov, Eugene V. Koonin, Luciano Milanesi
    Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a `weak' context of the start codon. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:10, pp:890-900 [Journal]
  16. Igor B. Rogozin, Luciano Milanesi, Nikolay A. Kolchanov
    Gene structure prediction using information on homologous protein sequence. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:3, pp:161-170 [Journal]
  17. Victor B. Strelets, Andrey A. Ptitsyn, Luciano Milanesi, Hwa A. Lim
    Data bank homology search algorithm with linear computation complexity. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1994, v:10, n:3, pp:319-322 [Journal]
  18. Victor B. Strelets, Ilya N. Shindyalov, Nikolay A. Kolchanov, Luciano Milanesi
    Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1992, v:8, n:6, pp:529-534 [Journal]
  19. G. A. Trombetti, Ivan Merelli, Luciano Milanesi
    High performance cDNA sequence analysis using grid technology. [Citation Graph (0, 0)][DBLP]
    J. Parallel Distrib. Comput., 2006, v:66, n:12, pp:1482-1488 [Journal]
  20. Maria Giuseppina Campi, Paolo Romano 0001, Luciano Milanesi, Domenico Marra, Maria Assunta Manniello, Beatrice Iannotta, Gabriella Rondanina, Elena Grasso, Tiziana Ruzzon, Leonardo Santi
    Molecular Probe Data Base (MPDB). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:145-147 [Journal]
  21. Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov
    ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:200-202 [Journal]
  22. Fedor Kolpakov, Vladimir Poroikov, Ruslan Sharipov, Yury Kondrakhin, Alexey Zakharov, Alexey Lagunin, Luciano Milanesi, Alexander E. Kel
    CYCLONET - an integrated database on cell cycle regulation and carcinogenesis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:550-556 [Journal]
  23. Giuliano Armano, Luciano Milanesi, Alessandro Orro
    Using Secondary Structure Information to Perform Multiple Alignment. [Citation Graph (0, 0)][DBLP]
    , 2005, v:, n:, pp:78-88 [Journal]
  24. Nicolas Jacq, Vincent Breton, Hsin-Yen Chen, Li-Yung Ho, Martin Hofmann 0009, Hurng-Chun Lee, Yannick Legré, Simon C. Lin, Astrid Maaß, Emmanuel Medernach, Ivan Merelli, Luciano Milanesi, Giulio Rastelli, Matthieu Reichstadt, Jean Salzemann, Horst Schwichtenberg, Mahendrakar Sridhar, Vinod Kasam, Ying-Ta Wu, Marc Zimmermann
    Large Scale In Silico Screening on Grid Infrastructures [Citation Graph (0, 0)][DBLP]
    CoRR, 2006, v:0, n:, pp:- [Journal]
  25. Alessandro Orro, Luciano Milanesi
    An Agent System for Automatic Workflows Composition in Grid Environments. [Citation Graph (0, 0)][DBLP]
    ITSSA, 2006, v:1, n:1, pp:59-66 [Journal]

  26. TMAinspect, an EGEE Framework for Tissue MicroArray Image Handling. [Citation Graph (, )][DBLP]


  27. A Novel Variant of P Systems for the Modelling and Simulation of Biochemical Systems. [Citation Graph (, )][DBLP]


  28. A Parallel Workflow for the Reconstruction of Molecular Surfaces. [Citation Graph (, )][DBLP]


  29. Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing. [Citation Graph (, )][DBLP]


  30. A Grid Service based Parallel Molecular Surface Reconstruction System. [Citation Graph (, )][DBLP]


  31. Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening. [Citation Graph (, )][DBLP]


  32. A Parallel Algorithm for Molecular Surface Matching Through Image Representation. [Citation Graph (, )][DBLP]


  33. A Dynamic Parallel Approach to Recognize Tubular Breast Cancer for TMA Image Building. [Citation Graph (, )][DBLP]


  34. Bayesian Phylogeny on Grid. [Citation Graph (, )][DBLP]


  35. Images Based System for Surface Matching in Macromolecular Screening. [Citation Graph (, )][DBLP]


  36. Enabling Parallel TMA Image Analysis in a Grid Environment. [Citation Graph (, )][DBLP]


  37. A Visualization ToolKit Based Application for Representing Macromolecular Surfaces. [Citation Graph (, )][DBLP]


  38. ESTuber db: an online database for Tuber borchii EST sequences. [Citation Graph (, )][DBLP]


  39. Data handling strategies for high throughput pyrosequencers. [Citation Graph (, )][DBLP]


  40. SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics. [Citation Graph (, )][DBLP]


  41. Biowep: a workflow enactment portal for bioinformatics applications. [Citation Graph (, )][DBLP]


  42. ProCMD: a database and 3D web resource for protein C mutants. [Citation Graph (, )][DBLP]


  43. Ontology-based, Tissue MicroArray oriented, image centered tissue bank. [Citation Graph (, )][DBLP]


  44. Version VI of the ESTree db: an improved tool for peach transcriptome analysis. [Citation Graph (, )][DBLP]


  45. Reconstructing networks of pathways via significance analysis of their intersections. [Citation Graph (, )][DBLP]


  46. SNPLims: a data management system for genome wide association studies. [Citation Graph (, )][DBLP]


  47. A Hybrid Genetic-Neural System for Predicting Protein Secondary Structure. [Citation Graph (, )][DBLP]


  48. Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. [Citation Graph (, )][DBLP]


  49. Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity. [Citation Graph (, )][DBLP]


  50. High performance workflow implementation for protein surface characterization using grid technology. [Citation Graph (, )][DBLP]


  51. ESTree db: a Tool for Peach Functional Genomics. [Citation Graph (, )][DBLP]


  52. Modelling the interaction of steroid receptors with endocrine disrupting chemicals. [Citation Graph (, )][DBLP]


  53. Web services and workflow management for biological resources. [Citation Graph (, )][DBLP]


  54. The GENIUS Grid Portal and robot certificates: a new tool for e-Science. [Citation Graph (, )][DBLP]


  55. The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections. [Citation Graph (, )][DBLP]


  56. In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study. [Citation Graph (, )][DBLP]


  57. Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation. [Citation Graph (, )][DBLP]


  58. Trends in modeling Biomedical Complex Systems. [Citation Graph (, )][DBLP]


  59. Identification of functionally related genes using data mining and data integration: a breast cancer case study. [Citation Graph (, )][DBLP]


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