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Niko Beerenwinkel: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig
    Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. [Citation Graph (0, 0)][DBLP]
    DILS, 2006, pp:185-194 [Conf]
  2. Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig
    Identifying drug resistance-associated patterns in HIV genotypes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:126-130 [Conf]
  3. Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig
    Methods for optimizing antiviral combination therapies. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2003, pp:16-25 [Conf]
  4. Tobias Sing, Niko Beerenwinkel, Thomas Lengauer, Valentina Svicher, Francesca Ceccherini-Silberstein, Carlo-Federico Perno
    Supervised and Unsupervised Approaches for Analyzing Covariation and Phenotypic Impact of HIV Drug Resistance Mutations. [Citation Graph (0, 0)][DBLP]
    LWA, 2005, pp:234-239 [Conf]
  5. Tobias Sing, Valentina Svicher, Niko Beerenwinkel, Francesca Ceccherini-Silberstein, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Mark Oette, Jürgen K. Rockstroh, Gerd Fätkenheuer, Carlo-Federico Perno, Thomas Lengauer
    Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking. [Citation Graph (0, 0)][DBLP]
    PKDD, 2005, pp:285-296 [Conf]
  6. Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
    Learning multiple evolutionary pathways from cross-sectional data. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:36-44 [Conf]
  7. Tobias Sing, Niko Beerenwinkel, Thomas Lengauer
    Learning Mixtures of Localized Rules by Maximizing the Area Under the ROC Curve. [Citation Graph (0, 0)][DBLP]
    ROCAI, 2004, pp:89-96 [Conf]
  8. Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer
    Mtreemix: a software package for learning and using mixture models of mutagenetic trees. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2106-2107 [Journal]
  9. Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer
    Computational methods for the design of effective therapies against drug resistant HIV strains. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:21, pp:3943-3950 [Journal]
  10. Jörg Rahnenführer, Niko Beerenwinkel, Wolfgang A. Schulz, Christian Hartmann, Andreas von Deimling, Bernd Wullich, Thomas Lengauer
    Estimating cancer survival and clinical outcome based on genetic tumor progression scores. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2438-2446 [Journal]
  11. Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
    ROCR: visualizing classifier performance in R. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:20, pp:3940-3941 [Journal]
  12. Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig
    Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests. [Citation Graph (0, 0)][DBLP]
    IEEE Intelligent Systems, 2001, v:16, n:6, pp:35-41 [Journal]
  13. Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
    Learning Multiple Evolutionary Pathways from Cross-Sectional Data. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:6, pp:584-598 [Journal]
  14. Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter
    Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3850-3855 [Journal]
  15. Tobias Sing, Niko Beerenwinkel
    Mutagenetic tree Fisher kernel improves prediction of HIV drug resistance from viral genotype. [Citation Graph (0, 0)][DBLP]
    NIPS, 2006, pp:1297-1304 [Conf]

  16. Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error Correction. [Citation Graph (, )][DBLP]


  17. Multiple Sequence Alignment System for Pyrosequencing Reads. [Citation Graph (, )][DBLP]


  18. Quantifying cancer progression with conjunctive Bayesian networks. [Citation Graph (, )][DBLP]


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