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Ewan Birney: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Andreas Prlic, Ewan Birney, Tony Cox, Thomas A. Down, Robert D. Finn, Stefan Gräf, David K. Jackson, Andreas Kähäri, Eugene Kulesha, Roger Pettett, James Smith, Jim Stalker, Tim J. P. Hubbard
    The Distributed Annotation System for Integration of Biological Data. [Citation Graph (0, 0)][DBLP]
    DILS, 2006, pp:195-203 [Conf]
  2. Ewan Birney
    Ensembl: Annotating metazoan genomes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:125- [Conf]
  3. Ewan Birney, Richard Durbin
    Dynamite: A Flexible Code Generating Language for Dynamic Programming Methods Used in Sequence Comparison. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:56-64 [Conf]
  4. Esther Schmidt, Ewan Birney, David Croft, Bernard de Bono, Peter D'Eustachio, Marc Gillespie, Gopal Gopinath, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Lincoln Stein, Imre Vastrik, Guanming Wu
    Reactome - A Knowledgebase of Biological Pathways. [Citation Graph (0, 0)][DBLP]
    OTM Workshops (1), 2006, pp:710-719 [Conf]
  5. Ewan Birney, Michele E. Clamp
    Biological database design and implementation. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2004, v:5, n:1, pp:31-38 [Journal]
  6. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    InterPro-an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:12, pp:1145-1150 [Journal]
  7. James A. Cuff, Ewan Birney, Michele E. Clamp, Geoffrey J. Barton
    ProtEST: protein multiple sequence alignments from expressed sequence tags. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:2, pp:111-116 [Journal]
  8. Matthew R. Pocock, Tim J. P. Hubbard, Ewan Birney
    SPEM: a parser for EMBL style flat file database entries. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:9, pp:823-824 [Journal]
  9. Eduardo Eyras, Alexandre Reymond, Robert Castelo, Jacqueline M. Bye, Francisco Camara, Paul Flicek, Elizabeth J. Huckle, Genis Parra, David D. Shteynberg, Carine Wyss, Jane Rogers, Stylianos E. Antonarakis, Ewan Birney, Roderic Guigó, Michael R. Brent
    Gene finding in the chicken genome. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:131- [Journal]
  10. Guy St. C. Slater, Ewan Birney
    Automated generation of heuristics for biological sequence comparison. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:31- [Journal]
  11. Ewan Birney
    Hidden Markov models in biological sequence analysis. [Citation Graph (0, 0)][DBLP]
    IBM Journal of Research and Development, 2001, v:45, n:3, pp:449-454 [Journal]
  12. Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
    The InterPro database, an integrated documentation resource for protein families, domains and functional sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:37-40 [Journal]
  13. Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Etwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer
    The Pfam Protein Families Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:276-280 [Journal]
  14. Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer
    Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:260-262 [Journal]
  15. Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer
    The Pfam Protein Families Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:263-266 [Journal]
  16. Ewan Birney, T. Daniel Andrews, Paul Bevan, Mario Cáccamo, Graham Cameron, Yuan Chen, Laura Clarke, G. Coates, Tony Cox, James A. Cuff, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, Eduardo Eyras, X. M. Fernandez-Suarez, P. Gane, B. Gibbins, James Gilbert, Martin Hammond, H. Hotz, V. Iyer, Andreas Kähäri, K. Jekosch, Arek Kasprzyk, Damian Keefe, S. Keenan, Heikki Lehväslaiho, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Glenn Proctor, Mark Rae, Stephen M. J. Searle, Guy Slater, Damian Smedley, James Smith, William Spooner, Arne Stabenau, Jim Stalker, R. Storey, Abel Ureta-Vidal, Cara Woodwark, Michele E. Clamp, Tim J. P. Hubbard
    Ensembl 2004. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:468-470 [Journal]
  17. Catherine Brooksbank, Evelyn Camon, Midori A. Harris, Michele Magrane, Maria Jesus Martin, Nicola J. Mulder, Claire O'Donovan, Helen E. Parkinson, Mary Ann Tuli, Rolf Apweiler, Ewan Birney, Alvis Brazma, Kim Henrick, Rodrigo Lopez, Guenter Stoesser, Peter Stoehr, Graham Cameron
    The European Bioinformatics Institute's data resources. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:43-50 [Journal]
  18. Michele E. Clamp, T. Daniel Andrews, Daniel Barker, Paul Bevan, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas Down, Richard Durbin, Eduardo Eyras, James Gilbert, Martin Hammond, Tim J. P. Hubbard, Arek Kasprzyk, Damian Keefe, Heikki Lehväslaiho, V. Iyer, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Alastair Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Ewan Birney
    Ensembl 2002: accommodating comparative genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:38-42 [Journal]
  19. Tim J. P. Hubbard, Daniel Barker, Ewan Birney, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas Down, Richard Durbin, Eduardo Eyras, James Gilbert, Martin Hammond, Lukasz Huminiecki, Arek Kasprzyk, Heikki Lehväslaiho, Philip Lijnzaad, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Matthew R. Pocock, Simon C. Potter, Alastair Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Michele E. Clamp
    The Ensembl genome database project. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:38-41 [Journal]
  20. Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin
    Pfam: multiple sequence alignments and HMM-profiles of protein domains. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1998, v:26, n:1, pp:320-322 [Journal]
  21. G. Joshi-Tope, Marc Gillespie, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Bernard de Bono, Bijay Jassal, G. R. Gopinath, G. R. Wu, Lisa Matthews, Suzanna Lewis, Ewan Birney, Lincoln Stein
    Reactome: a knowledgebase of biological pathways. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:428-432 [Journal]
  22. Tim J. P. Hubbard, D. Andrews, Mario Cáccamo, Graham Cameron, Yuan Chen, Michele E. Clamp, Laura Clarke, G. Coates, Tony Cox, Fiona Cunningham, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, X. M. Fernandez-Suarez, James Gilbert, Martin Hammond, J. Herrero, H. Hotz, K. Howe, V. Iyer, K. Jekosch, Andreas Kähäri, Arek Kasprzyk, Damian Keefe, S. Keenan, Felix Kokocinski, D. London, I. Longden, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Simon C. Potter, Glenn Proctor, Mark Rae, D. Rios, M. Schuster, Stephen M. J. Searle, J. Severin, Guy Slater, Damian Smedley, James Smith, William Spooner, Arne Stabenau, Jim Stalker, R. Storey, S. Trevanion, Abel Ureta-Vidal, J. Vogel, S. White, Cara Woodwark, Ewan Birney
    Ensembl 2005. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:447-453 [Journal]
  23. Ewan Birney, T. Daniel Andrews, Mario Cáccamo, Yuan Chen, Laura Clarke, G. Coates, Tony Cox, Fiona Cunningham, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, X. M. Fernandez-Suarez, Paul Flicek, Stefan Gräf, Martin Hammond, J. Herrero, K. Howe, V. Iyer, K. Jekosch, Andreas Kähäri, Arek Kasprzyk, Damian Keefe, Felix Kokocinski, Eugene Kulesha, D. London, I. Longden, Craig Melsopp, Patrick Meidl, B. Overduin, A. Parker, Glenn Proctor, Andreas Prlic, Mark Rae, D. Rios, Seth Redmond, M. Schuster, I. Sealy, Stephen M. J. Searle, J. Severin, Guy Slater, Damian Smedley, James Smith, Arne Stabenau, Jim Stalker, S. Trevanion, Abel Ureta-Vidal, J. Vogel, S. White, Cara Woodwark, Tim J. P. Hubbard
    Ensembl 2006. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:556-561 [Journal]
  24. Tim J. P. Hubbard, B. L. Aken, K. Beal, B. Ballester, Mario Cáccamo, Yuan Chen, Laura Clarke, G. Coates, Fiona Cunningham, Tim Cutts, Thomas Down, S. C. Dyer, S. Fitzgerald, J. Fernandez-Banet, Stefan Gräf, S. Haider, Martin Hammond, J. Herrero, R. Holland, K. Howe, N. Johnson, Andreas Kähäri, Damian Keefe, Felix Kokocinski, Eugene Kulesha, Daniel Lawson, I. Longden, Craig Melsopp, Karine Megy, Patrick Meidl, B. Ouverdin, A. Parker, Andreas Prlic, S. Rice, D. Rios, M. Schuster, I. Sealy, J. Severin, Guy Slater, Damian Smedley, G. Spudich, S. Trevanion, A. Vilella, J. Vogel, S. White, M. Wood, Tony Cox, Val Curwen, Richard Durbin, X. M. Fernandez-Suarez, Paul Flicek, Arek Kasprzyk, Glenn Proctor, Stephen M. J. Searle, James Smith, Abel Ureta-Vidal, Ewan Birney
    Ensembl 2007. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:610-617 [Journal]
  25. Daniel Lawson, Peter Arensburger, Peter Atkinson, Nora J. Besansky, Robert V. Bruggner, Ryan Butler, Kathryn S. Campbell, George K. Christophides, Scott Christley, Emmanuel Dialynas, David Emmert, Martin Hammond, Catherine A. Hill, Ryan C. Kennedy, Neil F. Lobo, M. Robert MacCallum, Gregory R. Madey, Karine Megy, Seth Redmond, Susan Russo, David W. Severson, Eric O. Stinson, Pantelis Topalis, Evgeni M. Zdobnov, Ewan Birney, William M. Gelbart, Fotis C. Kafatos, Christos Louis, Frank H. Collins
    VectorBase: a home for invertebrate vectors of human pathogens. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:503-505 [Journal]

  26. ENFIN - An Integrative Structure for Systems Biology. [Citation Graph (, )][DBLP]


  27. Optimized design and assessment of whole genome tiling arrays. [Citation Graph (, )][DBLP]


  28. Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment. [Citation Graph (, )][DBLP]


  29. Optimising oligonucleotide array design for ChIP-on-chip. [Citation Graph (, )][DBLP]


  30. Integrating biological data - the Distributed Annotation System. [Citation Graph (, )][DBLP]


  31. A database and API for variation, dense genotyping and resequencing data. [Citation Graph (, )][DBLP]


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