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Tim J. P. Hubbard: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Andreas Prlic, Ewan Birney, Tony Cox, Thomas A. Down, Robert D. Finn, Stefan Gräf, David K. Jackson, Andreas Kähäri, Eugene Kulesha, Roger Pettett, James Smith, Jim Stalker, Tim J. P. Hubbard
    The Distributed Annotation System for Integration of Biological Data. [Citation Graph (0, 0)][DBLP]
    DILS, 2006, pp:195-203 [Conf]
  2. Andreas Prlic, Thomas A. Down, Tim J. P. Hubbard
    Adding Some SPICE to DAS. [Citation Graph (0, 0)][DBLP]
    ECCB/JBI, 2005, pp:41- [Conf]
  3. Tim J. P. Hubbard
    Biological information: making it accessible and integrated (and trying to make sense of it). [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:140-140 [Conf]
  4. Tim J. P. Hubbard
    Use of beta-strand Interaction Pseudo-Potentials in Protein Structure Prediction and Modeling. [Citation Graph (0, 0)][DBLP]
    HICSS (5), 1994, pp:336-344 [Conf]
  5. Steven E. Brenner, Tim J. P. Hubbard
    A Specification for Defining and Annotating Regions of Macromolecular Structures. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:66-74 [Conf]
  6. Diego di Bernardo, Thomas Down, Tim J. P. Hubbard
    ddbRNA: detection of conserved secondary structures in multiple alignments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:13, pp:1606-1611 [Journal]
  7. Raphael Leplae, Tim J. P. Hubbard
    MaxBench: evaluation of sequence and structure comparison methods. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:3, pp:494-495 [Journal]
  8. Matthew R. Pocock, Tim J. P. Hubbard
    A browser for expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:4, pp:402-403 [Journal]
  9. Matthew R. Pocock, Tim J. P. Hubbard, Ewan Birney
    SPEM: a parser for EMBL style flat file database entries. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:9, pp:823-824 [Journal]
  10. Thomas A. Down, Tim J. P. Hubbard
    What can we learn from noncoding regions of similarity between genomes? [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:131- [Journal]
  11. Antonina Andreeva, Dave Howorth, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin
    SCOP database in 2004: refinements integrate structure and sequence family data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:226-229 [Journal]
  12. Ewan Birney, T. Daniel Andrews, Paul Bevan, Mario Cáccamo, Graham Cameron, Yuan Chen, Laura Clarke, G. Coates, Tony Cox, James A. Cuff, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, Eduardo Eyras, X. M. Fernandez-Suarez, P. Gane, B. Gibbins, James Gilbert, Martin Hammond, H. Hotz, V. Iyer, Andreas Kähäri, K. Jekosch, Arek Kasprzyk, Damian Keefe, S. Keenan, Heikki Lehväslaiho, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Glenn Proctor, Mark Rae, Stephen M. J. Searle, Guy Slater, Damian Smedley, James Smith, William Spooner, Arne Stabenau, Jim Stalker, R. Storey, Abel Ureta-Vidal, Cara Woodwark, Michele E. Clamp, Tim J. P. Hubbard
    Ensembl 2004. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:468-470 [Journal]
  13. Michele E. Clamp, T. Daniel Andrews, Daniel Barker, Paul Bevan, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas Down, Richard Durbin, Eduardo Eyras, James Gilbert, Martin Hammond, Tim J. P. Hubbard, Arek Kasprzyk, Damian Keefe, Heikki Lehväslaiho, V. Iyer, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Alastair Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Ewan Birney
    Ensembl 2002: accommodating comparative genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:38-42 [Journal]
  14. Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia
    SCOP: a Structural Classification of Proteins database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:257-259 [Journal]
  15. Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin
    SCOP database in 2002: refinements accommodate structural genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:264-267 [Journal]
  16. Tim J. P. Hubbard, Bart Ailey, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia
    SCOP: a Structural Classification of Proteins database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:254-256 [Journal]
  17. Tim J. P. Hubbard, Alexey G. Murzin, Steven E. Brenner, Cyrus Chothia
    SCOP: a structural classification of proteins database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1997, v:25, n:1, pp:236-239 [Journal]
  18. Tim J. P. Hubbard, Daniel Barker, Ewan Birney, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas Down, Richard Durbin, Eduardo Eyras, James Gilbert, Martin Hammond, Lukasz Huminiecki, Arek Kasprzyk, Heikki Lehväslaiho, Philip Lijnzaad, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Matthew R. Pocock, Simon C. Potter, Alastair Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Michele E. Clamp
    The Ensembl genome database project. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2002, v:30, n:1, pp:38-41 [Journal]
  19. Tim J. P. Hubbard, D. Andrews, Mario Cáccamo, Graham Cameron, Yuan Chen, Michele E. Clamp, Laura Clarke, G. Coates, Tony Cox, Fiona Cunningham, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, X. M. Fernandez-Suarez, James Gilbert, Martin Hammond, J. Herrero, H. Hotz, K. Howe, V. Iyer, K. Jekosch, Andreas Kähäri, Arek Kasprzyk, Damian Keefe, S. Keenan, Felix Kokocinski, D. London, I. Longden, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Simon C. Potter, Glenn Proctor, Mark Rae, D. Rios, M. Schuster, Stephen M. J. Searle, J. Severin, Guy Slater, Damian Smedley, James Smith, William Spooner, Arne Stabenau, Jim Stalker, R. Storey, S. Trevanion, Abel Ureta-Vidal, J. Vogel, S. White, Cara Woodwark, Ewan Birney
    Ensembl 2005. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:447-453 [Journal]
  20. J. L. Ashurst, C.-K. Chen, J. G. R. Gilbert, K. Jekosch, S. Keenan, Patrick Meidl, Stephen M. J. Searle, Jim Stalker, R. Storey, S. Trevanion, L. Wilming, Tim J. P. Hubbard
    The Vertebrate Genome Annotation (Vega) database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:459-465 [Journal]
  21. Ewan Birney, T. Daniel Andrews, Mario Cáccamo, Yuan Chen, Laura Clarke, G. Coates, Tony Cox, Fiona Cunningham, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, X. M. Fernandez-Suarez, Paul Flicek, Stefan Gräf, Martin Hammond, J. Herrero, K. Howe, V. Iyer, K. Jekosch, Andreas Kähäri, Arek Kasprzyk, Damian Keefe, Felix Kokocinski, Eugene Kulesha, D. London, I. Longden, Craig Melsopp, Patrick Meidl, B. Overduin, A. Parker, Glenn Proctor, Andreas Prlic, Mark Rae, D. Rios, Seth Redmond, M. Schuster, I. Sealy, Stephen M. J. Searle, J. Severin, Guy Slater, Damian Smedley, James Smith, Arne Stabenau, Jim Stalker, S. Trevanion, Abel Ureta-Vidal, J. Vogel, S. White, Cara Woodwark, Tim J. P. Hubbard
    Ensembl 2006. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:556-561 [Journal]
  22. Antonina Andreeva, Andreas Prlic, Tim J. P. Hubbard, Alexey G. Murzin
    SISYPHUS - structural alignments for proteins with non-trivial relationships. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:253-259 [Journal]
  23. Tim J. P. Hubbard, B. L. Aken, K. Beal, B. Ballester, Mario Cáccamo, Yuan Chen, Laura Clarke, G. Coates, Fiona Cunningham, Tim Cutts, Thomas Down, S. C. Dyer, S. Fitzgerald, J. Fernandez-Banet, Stefan Gräf, S. Haider, Martin Hammond, J. Herrero, R. Holland, K. Howe, N. Johnson, Andreas Kähäri, Damian Keefe, Felix Kokocinski, Eugene Kulesha, Daniel Lawson, I. Longden, Craig Melsopp, Karine Megy, Patrick Meidl, B. Ouverdin, A. Parker, Andreas Prlic, S. Rice, D. Rios, M. Schuster, I. Sealy, J. Severin, Guy Slater, Damian Smedley, G. Spudich, S. Trevanion, A. Vilella, J. Vogel, S. White, M. Wood, Tony Cox, Val Curwen, Richard Durbin, X. M. Fernandez-Suarez, Paul Flicek, Arek Kasprzyk, Glenn Proctor, Stephen M. J. Searle, James Smith, Abel Ureta-Vidal, Ewan Birney
    Ensembl 2007. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:610-617 [Journal]

  24. The Protein Feature Ontology: a tool for the unification of protein feature annotations. [Citation Graph (, )][DBLP]


  25. iMotifs: an integrated sequence motif visualization and analysis environment. [Citation Graph (, )][DBLP]


  26. Integrating sequence and structural biology with DAS. [Citation Graph (, )][DBLP]


  27. NestedMICA as an ab initio protein motif discovery tool. [Citation Graph (, )][DBLP]


  28. Integrating biological data - the Distributed Annotation System. [Citation Graph (, )][DBLP]


  29. A machine learning strategy to identify candidate binding sites in human protein-coding sequence. [Citation Graph (, )][DBLP]


  30. Metamotifs - a generative model for building families of nucleotide position weight matrices. [Citation Graph (, )][DBLP]


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