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Shankar Subramaniam: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Shankar Subramaniam
    Challenges in Biological Data Integration in the Post-genome Sequence Era. [Citation Graph (0, 0)][DBLP]
    DILS, 2005, pp:1- [Conf]
  2. Thomas R. Ioerger, Larry A. Rendell, Shankar Subramaniam
    Constructive Induction and Protein Tertiary Structure Prediction. [Citation Graph (0, 0)][DBLP]
    ISMB, 1993, pp:198-206 [Conf]
  3. Shankar Subramaniam, David K. Tcheng, James M. Fenton
    A Knowledge-Based Method for Protein Structure Refinement and Prediction. [Citation Graph (0, 0)][DBLP]
    ISMB, 1996, pp:218-229 [Conf]
  4. Madhusudan, Illango Vadivelu, Lothar Krause, Yuhong Ning, Stephen Lyon, Peter Morrison, Lonnie Sorrells, Ron Taussig, Shankar Subramaniam
    The Laboratory Information Management System (LIMS) for Handling the Heterogeneous Data from High Throughput Experiments in the Post-Genome Sequencing Era. [Citation Graph (0, 0)][DBLP]
    METMBS, 2004, pp:98-104 [Conf]
  5. Yi-Wen Guu, Shankar Subramaniam
    An Efficient Storage Scheme for Aligned Genetic Sequences. [Citation Graph (0, 0)][DBLP]
    SAC, 1993, pp:139-146 [Conf]
  6. Shankar Subramaniam, David K. Tcheng, K. Hu, Harish Ragavan, Larry A. Rendell
    Knowledge Engineering for Protein Structure and Motifs: Design of a Prototype System. [Citation Graph (0, 0)][DBLP]
    SEKE, 1992, pp:420-435 [Conf]
  7. Georgios Joannis Pappas Jr., Shankar Subramaniam
    Analysis of the Effects of Multiple Sequence Alignments in Protein Secondary Structure Prediction. [Citation Graph (0, 0)][DBLP]
    BSB, 2005, pp:128-140 [Conf]
  8. Chittibabu Guda, Eoin Fahy, Shankar Subramaniam
    MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:11, pp:1785-1794 [Journal]
  9. Chittibabu Guda, Shankar Subramaniam
    TARGET: a new method for predicting protein subcellular localization in eukaryotes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:21, pp:3963-3969 [Journal]
  10. Albert Hsiao, D. S. Worrall, Jerrold M. Olefsky, Shankar Subramaniam
    Variance-modeled posterior inference of microarray data: detecting gene-expression changes in 3T3-L1 adipocytes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3108-3127 [Journal]
  11. Yohan Kim, Mehmet Koyutürk, Umut Topkara, Ananth Grama, Shankar Subramaniam
    Inferring functional information from domain co-evolution. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:1, pp:40-49 [Journal]
  12. Jamie A. Lee, Robert S. Sinkovits, Dennis Mock, Eva L. Rab, Jennifer Cai, Peng Yang, Brian Saunders, Robert C. Hsueh, Sangdun Choi, Shankar Subramaniam, Richard H. Scheuermann
    Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:237- [Journal]
  13. David K. Tcheng, Shankar Subramaniam
    Machine Approaches to Protein Feature Prediction. [Citation Graph (0, 0)][DBLP]
    Int. J. Neural Syst., 1992, v:3, n:Supplement, pp:183-193 [Journal]
  14. See-Wing Chiu, Michael M. Clark, Eric Jakobsson, Shankar Subramaniam, H. Larry Scott
    Application of combined Monte Carlo and molecular dynamics method to simulation of dipalmitoyl phosphatidylcholine lipid bilayer. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 1999, v:20, n:11, pp:1153-1164 [Journal]
  15. See-Wing Chiu, Michael M. Clark, Shankar Subramaniam, Eric Jakobsson
    Collective motion artifacts arising in long-duration molecular dynamics simulations. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2000, v:21, n:2, pp:121-131 [Journal]
  16. Roberta Susnow, Clarence Schutt, Herschel Rabitz, Shankar Subramaniam
    Conformational Study of Dipeptides: A Sensitivity Analysis Approach. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 1994, v:15, n:9, pp:947-962 [Journal]
  17. Thomas R. Ioerger, Larry A. Rendell, Shankar Subramaniam
    Searching for Representations to Improve Protein Sequence Fold-Class Prediction. [Citation Graph (0, 0)][DBLP]
    Machine Learning, 1995, v:21, n:1-2, pp:151-175 [Journal]
  18. Giridhar Chukkapalli, Chittibabu Guda, Shankar Subramaniam
    SledgeHMMER: a web server for batch searching the Pfam database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:542-544 [Journal]
  19. Dawn Cotter, Purnima Guda, Eoin Fahy, Shankar Subramaniam
    MitoProteome: mitochondrial protein sequence database and annotation system. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:463-467 [Journal]
  20. Chittibabu Guda, Purnima Guda, Eoin Fahy, Shankar Subramaniam
    MITOPRED: a web server for the prediction of mitochondrial proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:372-374 [Journal]
  21. Albert Hsiao, Trey Ideker, Jerrold M. Olefsky, Shankar Subramaniam
    VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:627-632 [Journal]
  22. Dawn Cotter, Andreia Maer, Chittibabu Guda, Brian Saunders, Shankar Subramaniam
    LMPD: LIPID MAPS proteome database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:507-510 [Journal]
  23. Manish Sud, Eoin Fahy, Dawn Cotter, Alex Brown, Edward A. Dennis, Christopher K. Glass, Alfred H. Merrill Jr., Robert C. Murphy, Christian R. H. Raetz, David W. Russell, Shankar Subramaniam
    LMSD: LIPID MAPS structure database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:527-532 [Journal]

  24. A Clustering Approach to Identify Intergenic Non-coding RNA in Mouse Macrophages. [Citation Graph (, )][DBLP]


  25. Peak-Finding Refinement in the Chip-SEQ Experiment. [Citation Graph (, )][DBLP]


  26. Functional coherence in domain interaction networks. [Citation Graph (, )][DBLP]


  27. Functional annotation of regulatory pathways. [Citation Graph (, )][DBLP]


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