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Publications of Author

1. Jianhua Ruan, Weixiong Zhang
   Identification and Evaluation of Weak Community Structures in Networks. [Citation Graph (0, 0)][DBLP]
   AAAI, 2006, pp:- [Conf]
   
2. Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
   An Iterative Loop Matching Approach to the Prediction of RNA Secondary Stru. [Citation Graph (0, 0)][DBLP]
   CSB, 2003, pp:519-520 [Conf]
   
3. Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
   An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2004, v:20, n:1, pp:58-66 [Journal]
   
4. Jianhua Ruan, Weixiong Zhang
   A bi-dimensional regression tree approach to the modeling of gene expression regulation. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2006, v:22, n:3, pp:332-340 [Journal]
   
5. Weixiong Zhang, Jianhua Ruan, Tuan-hua David Ho, Youngsook You, Taotao Yu, Ralph S. Quatrano
   Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2005, v:21, n:14, pp:3074-3081 [Journal]
   
6. Jianhua Ruan, Weixiong Zhang
   CAGER: classification analysis of gene expression regulation using multiple information sources. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2005, v:6, n:, pp:114- [Journal]
   
7. Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
   ILM: a web server for predicting RNA secondary structures with pseudoknots. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:146-149 [Journal]
   
8. Jianhua Ruan, Weixiong Zhang
   Identification and Evaluation of Functional Modules in Gene Co-expression Networks. [Citation Graph (0, 0)][DBLP]
   Systems Biology and Computational Proteomics, 2006, pp:57-76 [Conf]
   
9. Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang
   Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans , H. sapiens and A. thaliana. [Citation Graph (0, 0)][DBLP]
   Systems Biology and Regulatory Genomics, 2005, pp:235-248 [Conf]
   
10. 
    Finding Gapped Motifs by a Novel Evolutionary Algorithm. [Citation Graph (, )][DBLP]
    
    
11. 
    An Efficient Spectral Algorithm for Network Community Discovery and Its Applications to Biological and Social Networks. [Citation Graph (, )][DBLP]
    
    
12. 
    A Fully Automated Method for Discovering Community Structures in High Dimensional Data. [Citation Graph (, )][DBLP]
    
    
13. 
    A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes. [Citation Graph (, )][DBLP]